rna217, rna217 (mRNA) Nannochloropsis gaditana

Overview
Namerna217
Unique Namerna217
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1361
Alignment locationCM002455.1:545813..547771 -

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Properties
Property NameValue
Productzinc finger ccch type domain-containing protein zfn-like 3
Orig transcript idgnl|cribi|Naga_100100g23.8925.mrna
Orig protein idgnl|cribi|Naga_100100g23.8925
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:545813..547771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100100g23gene207Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna217rna217-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30457.1cds217Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna217 ID=rna217|Name=rna217|organism=Nannochloropsis gaditana|type=mRNA|length=1361bp
CTACAGGCCTACGCCTGTGAGGGATATGGTGGAGATAACAATGGAGTTAC
CTGGCCAAGACTATCCTCTTTACCACGGGGGCGAGGAGGCGGGTAAGTAC
CGTCATATGAGGGGCGTGCCGGTAGTGCGCGTTCCCTCCTGTCAGACCCG
AGGCGACTTAGCCACCACGAAAGACATTGAGCACTGATAACATGTTTTTG
GGTCATGCGACAGGCGAGGAAGACGGCGTCGGAGCTGTGTGCTACCCACA
GCGGCCGGGGGAATTGGAGTGCCAGTACTATATGAAGACTGGAACCTGCA
AGTATGCCACGAAATGCAAGTTCCATCATCCTCCTGATGTGACTCCAACC
TGGGGAACCGTAGCGCCCGCGACAGACGTGACGATCGGGCTGAACAAGGA
GTCATACCCTCGGCGGCCAGGGGAGCAGCAATGCACATTCTTTTTGAAGA
CGGGCACGTGCAAGTACAAGATGTCGTGCAAATTCGACCATCCCCCGGAG
GCAATCCAACAGACCCTCCAGCTCCAGGCCACGCCCTACCCCATGCGCCC
CGGGGAGTTACAGTGCTCCTACTACCTCAAGACGGGGAAGTGCAAATTTG
GAGCGACTTGTCGCTTCGACCACCCCGCGATGGCCCCCGAGCACGCGACG
GCCCTGGCGGCAGGACAGTACGCAGGTGCTGGGGGAGCGGGGGGGATGAA
CGGGCACGTTGGAGGGGCCGCGGGCATGCACGCCATGCTGGCGATGGGGA
GGGTGGGGATGGGCTACTACGAGGGCACGGCGGGCGGAGGCATGCTGGAC
ATGATGGGACTACCAGGACAGCAGATGCTCGCCAATTTTGGCGCGGGTGC
CCCACTCGCCCAGCTCCCTCAGCGGCCCGGGGAGAAGGAGTGCACTTTCT
TCCTCCGCACAGGTCGGTGTCAATATGGGCCCCGGTGCAAATTCCACCAC
CCGCTGGACAAGCTACAGGGGGCGCTCATGGGTCTGAACGGGGTTCATGG
AGGGCCCCACCTGTCCCACCCCCATGTGACCGGCCTGCACGCCCCGGGCT
TCGGGCATCCGGGACTGGAAGGTCTTTACAGCCCCTACGCCCTCCCGGCC
TCGGGTCCGGCGGGCCTCTCCCACGCCGGGCACTTGGCCATGCGCGCTGG
CGCCGGTGGTCTCGGGTCAAGCGGGGCGGGGGGGGAGGGGAAGGGTCGCT
GCCCCTGCGCCCTGGTCAGGAGCCGTGTTCCTTTTATTTGCGGACCGGGA
AATGCTCGTACGGCCCCACCTGTCGGTTCGACCACCCCCGTGTGGGCGGA
GTGGCGCGGGAATTGAGCAGTGGGGCGGGGAGTCGGGAGGGAGGAAGGGA
GGGAGGGAAGG
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protein sequence of rna217

>rna217-protein ID=rna217-protein|Name=rna217|organism=Nannochloropsis gaditana|type=polypeptide|length=281bp
MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFD
HPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYY
EGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRC
QYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLE
GLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVR
SRVPFICGPGNARTAPPVGSTTPVWAEWRGN
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mRNA from alignment at CM002455.1:545813..547771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna217 ID=rna217|Name=rna217|organism=Nannochloropsis gaditana|type=mRNA|length=1959bp|location=Sequence derived from alignment at CM002455.1:545813..547771- (Nannochloropsis gaditana)
CTACAGGCCTACGCCTGTGAGGGATATGGTGGAGATAACAATGGAGTTAC
CTGGCCAAGACTATCCTCTTTACCACGGGGGCGAGGAGGCGGGTAAGTAC
CGTCATATGAGGGGCGTGCCGGTAGTGCGCGTTCCCTCCTGTCAGACCCG
AGGCGACTTAGCCACCACGAAAGACATTGAGCACTGATAACATGTTTTTG
GGTCATGCGACAGGCGAGGAAGACGGCGTCGGAGCTGTGTGCTACCCACA
GCGGCCGGGGGAATTGGAGTGCCAGTACTATATGAAGACTGGAACCTGCA
AGTAAGTGAAAACTGGAGGGAGGGAGAAAGAAGAGGGTAAGGGAGACCTA
TCGCAGCAAAATATCAAGCCGTTACACTTGCACTCAAAGCATGAAATTCA
GCCAAAGTGAGAGATAATGAGAGGAGAGTACTTAGCACTGGCCTAGGACC
TGCGCCATCACTTACTAGCGATCATCCCCCTTTCAGGTATGCCACGAAAT
GCAAGTTCCATCATCCTCCTGATGTGACTCCAACCTGGGGAACCGTAGCG
CCCGCGACAGACGTGACGATCGGGCTGAACAAGGAGGTGAGCGGAGGGAA
GAGGGGCAGGCTGAGAAGACCGGGCCTGGGAGGGCGCTTCTGGGGGAATG
GGAGGGGGTGGGGCCAGAAGCAGGAATGGAGGCGTGGCTCTGCAAAAGTG
GGCCTTCCTTTAGGACATAGGTTTAGCAGGAAGGGTCGGAAAGCGAGGGA
TTCTAATGGCATGCCTTCCGGGGATCCATTGACTCACGCCTCCCTGCGGG
CTCATCGCTTTCATCAGTCATACCCTCGGCGGCCAGGGGAGCAGCAATGC
ACATTCTTTTTGAAGACGGGCACGTGCAAGTACAAGATGTCGTGCAAGTA
AGAAGGGGAGGAAAGGGTGGCCAGTTAGAAGAGCCCAGTCGCCGCAACGT
CTTGGAAATAGAATGTCTGGCTCGAGCAGCGAACGCGACGCATGCGTGGC
GCGGAGCAGCGATTCGTTCTAGCAGGGCTCTTGACCCCGCCATCCTCACC
TTCCTCTTTTCCTGACTGTTACTACCCAGATTCGACCATCCCCCGGAGGC
AATCCAACAGACCCTCCAGCTCCAGGCCACGCCCTACCCCATGCGCCCCG
GGGAGTTACAGTGCTCCTACTACCTCAAGACGGGGAAGTGCAAATTTGGA
GCGACTTGTCGCTTCGACCACCCCGCGATGGCCCCCGAGCACGCGACGGC
CCTGGCGGCAGGACAGTACGCAGGTGCTGGGGGAGCGGGGGGGATGAACG
GGCACGTTGGAGGGGCCGCGGGCATGCACGCCATGCTGGCGATGGGGAGG
GTGGGGATGGGCTACTACGAGGGCACGGCGGGCGGAGGCATGCTGGACAT
GATGGGACTACCAGGACAGCAGATGCTCGCCAATTTTGGCGCGGGTGCCC
CACTCGCCCAGCTCCCTCAGCGGCCCGGGGAGAAGGAGTGCACTTTCTTC
CTCCGCACAGGTCGGTGTCAATATGGGCCCCGGTGCAAATTCCACCACCC
GCTGGACAAGCTACAGGGGGCGCTCATGGGTCTGAACGGGGTTCATGGAG
GGCCCCACCTGTCCCACCCCCATGTGACCGGCCTGCACGCCCCGGGCTTC
GGGCATCCGGGACTGGAAGGTCTTTACAGCCCCTACGCCCTCCCGGCCTC
GGGTCCGGCGGGCCTCTCCCACGCCGGGCACTTGGCCATGCGCGCTGGCG
CCGGTGGTCTCGGGTCAAGCGGGGCGGGGGGGGAGGGGAAGGGTCGCTGC
CCCTGCGCCCTGGTCAGGAGCCGTGTTCCTTTTATTTGCGGACCGGGAAA
TGCTCGTACGGCCCCACCTGTCGGTTCGACCACCCCCGTGTGGGCGGAGT
GGCGCGGGAATTGAGCAGTGGGGCGGGGAGTCGGGAGGGAGGAAGGGAGG
GAGGGAAGG
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Coding sequence (CDS) from alignment at CM002455.1:545813..547771-

>rna217 ID=rna217|Name=rna217|organism=Nannochloropsis gaditana|type=CDS|length=1692bp|location=Sequence derived from alignment at CM002455.1:545813..547771- (Nannochloropsis gaditana)
ATTCGACCATCCCCCGGAGGCAATCCAACAGACCCTCCAGCTCCAGGCCA
CGCCCTACCCCATGCGCCCCGGGGAGTTACAGTGCTCCTACTACCTCAAG
ACGGGGAAGTGCAAATTTGGAGCGACTTGTCGCTTCGACCACCCCGCGAT
GGCCCCCGAGCACGCGACGGCCCTGGCGGCAGGACAGTACGCAGGTGCTG
GGGGAGCGGGGGGGATGAACGGGCACGTTGGAGGGGCCGCGGGCATGCAC
GCCATGCTGGCGATGGGGAGGGTGGGGATGGGCTACTACGAGGGCACGGC
GGGCGGAGGCATGCTGGACATGATGGGACTACCAGGACAGCAGATGCTCG
CCAATTTTGGCGCGGGTGCCCCACTCGCCCAGCTCCCTCAGCGGCCCGGG
GAGAAGGAGTGCACTTTCTTCCTCCGCACAGGTCGGTGTCAATATGGGCC
CCGGTGCAAATTCCACCACCCGCTGGACAAGCTACAGGGGGCGCTCATGG
GTCTGAACGGGGTTCATGGAGGGCCCCACCTGTCCCACCCCCATGTGACC
GGCCTGCACGCCCCGGGCTTCGGGCATCCGGGACTGGAAGGTCTTTACAG
CCCCTACGCCCTCCCGGCCTCGGGTCCGGCGGGCCTCTCCCACGCCGGGC
ACTTGGCCATGCGCGCTGGCGCCGGTGGTCTCGGGTCAAGCGGGGCGGGG
GGGGAGGGGAAGGGTCGCTGCCCCTGCGCCCTGGTCAGGAGCCGTGTTCC
TTTTATTTGCGGACCGGGAAATGCTCGTACGGCCCCACCTGTCGGTTCGA
CCACCCCCGTGTGGGCGGAGTGGCGCGGGAATTGAATGTCGTGCAAATTC
GACCATCCCCCGGAGGCAATCCAACAGACCCTCCAGCTCCAGGCCACGCC
CTACCCCATGCGCCCCGGGGAGTTACAGTGCTCCTACTACCTCAAGACGG
GGAAGTGCAAATTTGGAGCGACTTGTCGCTTCGACCACCCCGCGATGGCC
CCCGAGCACGCGACGGCCCTGGCGGCAGGACAGTACGCAGGTGCTGGGGG
AGCGGGGGGGATGAACGGGCACGTTGGAGGGGCCGCGGGCATGCACGCCA
TGCTGGCGATGGGGAGGGTGGGGATGGGCTACTACGAGGGCACGGCGGGC
GGAGGCATGCTGGACATGATGGGACTACCAGGACAGCAGATGCTCGCCAA
TTTTGGCGCGGGTGCCCCACTCGCCCAGCTCCCTCAGCGGCCCGGGGAGA
AGGAGTGCACTTTCTTCCTCCGCACAGGTCGGTGTCAATATGGGCCCCGG
TGCAAATTCCACCACCCGCTGGACAAGCTACAGGGGGCGCTCATGGGTCT
GAACGGGGTTCATGGAGGGCCCCACCTGTCCCACCCCCATGTGACCGGCC
TGCACGCCCCGGGCTTCGGGCATCCGGGACTGGAAGGTCTTTACAGCCCC
TACGCCCTCCCGGCCTCGGGTCCGGCGGGCCTCTCCCACGCCGGGCACTT
GGCCATGCGCGCTGGCGCCGGTGGTCTCGGGTCAAGCGGGGCGGGGGGGG
AGGGGAAGGGTCGCTGCCCCTGCGCCCTGGTCAGGAGCCGTGTTCCTTTT
ATTTGCGGACCGGGAAATGCTCGTACGGCCCCACCTGTCGGTTCGACCAC
CCCCGTGTGGGCGGAGTGGCGCGGGAATTGAATGTCGTGCAA
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Synonyms
Publications