EWM30457.1, cds217 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|585113119|gb|EWM30456.1| (zinc finger ccch type domain-containing protein zfn-like 3 [Nannochloropsis gaditana]) HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0 Query: 1 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 281 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN Sbjct: 94 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 374
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|585113120|gb|EWM30457.1| (zinc finger ccch type domain-containing protein zfn-like 3 [Nannochloropsis gaditana]) HSP 1 Score: 558.91 bits (1439), Expect = 0.000e+0 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0 Query: 1 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 281 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN Sbjct: 1 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 281
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|1142683287|gb|ONM41330.1| (Zinc finger CCCH domain-containing protein 37 [Zea mays]) HSP 1 Score: 104.375 bits (259), Expect = 5.758e-22 Identity = 63/183 (34.43%), Postives = 86/183 (46.99%), Query Frame = 0 Query: 3 CKFDHPPEAIQ--------QTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQ--YAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLAN----------FGAGAPLAQL-PQRPGEKECTFFLRTGRCQYGPRCKFHHPLDK 164 CKF+HP E + ++L T P+RP E CS+Y KTGKCKFGA C+F+HP + +L A + Y A H+GG V + A + GLP + + AN G P+ + PQRPGE C F+++TG C+Y CKFHHP D+ Sbjct: 211 CKFNHPKEMVNALGTRTDNESLIADTTILPVRPSEPVCSFYAKTGKCKFGAVCKFNHPKLEDIKTPSLIAKETIYRATTDAA---AHIGGTD--------DSVPAKTHAPIAPAEAHNAKGLPIRPVSANMVLFVASIILIGQVEPMPMIYPQRPGEIVCDFYMKTGSCKYAQNCKFHHPFDR 382 HSP 2 Score: 75.8702 bits (185), Expect = 4.946e-12 Identity = 42/139 (30.22%), Postives = 62/139 (44.60%), Query Frame = 0 Query: 23 YPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHP 161 YP RPG+ C++Y+ TG CK+G TC+FDHP PE + G +L+ + M++ +G N A LP RP E C+F+ +TG+C++G CKF+HP Sbjct: 138 YPQRPGQKDCAFYMSTGTCKYGETCKFDHPQWVPEGGVP----NWKEVLNDEDYYPERPGEPDCPYLLSSRCKFKSKCKFNHPKEMVNALG----TRTDNESLIADTTILPVRPSEPVCSFYAKTGKCKFGAVCKFNHP 268
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|685375923|ref|XP_009120963.1| (PREDICTED: zinc finger CCCH domain-containing protein 58-like [Brassica rapa]) HSP 1 Score: 103.219 bits (256), Expect = 1.617e-21 Identity = 66/198 (33.33%), Postives = 94/198 (47.47%), Query Frame = 0 Query: 2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQ--YAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMG---LPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175 SCK+ HP + T+ L +P+RPGE +CSYY++TG CKFG+TCRF HP A P H L+ G Y G+ +V G ++ + + GM Y G A G MG +P + PQRPGE +C +F+RTG C++G C+FHHPL+ + L+ + Sbjct: 111 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGAQPPSHQQQLSTGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQMVLPPPGMVPYPGWNPYQASPGSQPSMGSSSVPLAPAYQTSLSSNKEQSFPQRPGEPDCQYFMRTGDCKFGASCRFHHPLEAAPPKGVNLSNI 308
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|923786324|ref|XP_013683172.1| (PREDICTED: zinc finger CCCH domain-containing protein 58-like [Brassica napus]) HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21 Identity = 66/198 (33.33%), Postives = 94/198 (47.47%), Query Frame = 0 Query: 2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQ--YAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMG---LPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175 SCK+ HP + T+ L +P+RPGE +CSYY++TG CKFG+TCRF HP A P H L+ G Y G+ +V G ++ + + GM Y G A G MG +P + PQRPGE +C +F+RTG C++G C+FHHPL+ + L+ + Sbjct: 111 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGAQPPSHQQQLSTGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQMVLPPPGMVPYPGWNPYQASPGSQPSMGSSSVPLAPAYQTSLSSNKEQSFPQRPGEPDCQYFMRTGDCKFGASCRFHHPLEAAPPKGVNLSNI 308 HSP 2 Score: 77.411 bits (189), Expect = 1.944e-12 Identity = 48/140 (34.29%), Postives = 64/140 (45.71%), Query Frame = 0 Query: 23 YPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPL 162 +P RP E C YYL+TG C +G+ CRF+HP P A L + G +G H M GT G P Q+ + P RPGEKEC++++RTG C++G C+FHHPL Sbjct: 42 FPERPDEPDCIYYLRTGVCGYGSRCRFNHP---PNRAPVLGGLRTE----PGEFPERMGQPVCQHFMRT----------GTCKFGASCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPL 164
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|1024016383|gb|KZV35887.1| (Zinc finger C-x8-C-x5-C-x3-H type family protein [Dorcoceras hygrometricum]) HSP 1 Score: 101.679 bits (252), Expect = 1.835e-21 Identity = 67/210 (31.90%), Postives = 93/210 (44.29%), Query Frame = 0 Query: 2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGL---------PGQQM------------------LANFGAGAPLA-----------------QLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKL 165 SCKF+HP A + L YP+RPGE +CSYYLK+G+CKFGATC+FDHP A A YA ++ ++ +A + G Y A G ML G+ PGQ ++ G+ AP Q P+RPG+ C +++RTG C+YG C+++HP D L Sbjct: 52 SCKFNHPKNAGGSLNNVPLNIYGYPLRPGEKECSYYLKSGQCKFGATCKFDHPQPAGSAVPASVRPFYANVQSLSSVSPEQYNSSSTSYRVARPHLVPGSYVAGAYGPMLLHPGVVPISNWNPYPGQLSPTPSPGAQPSAGVTSMYGMSQLGSSAPAVTGAYSQLPSSSNIHKELQFPERPGQPNCNYYMRTGDCKYGSSCRYNHPPDWL 261 HSP 2 Score: 60.8474 bits (146), Expect = 4.269e-7 Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0 Query: 2 SCKFDHPPEAIQQTLQLQATP--YPMRPGELQCSYYLKTGKCKFGATCRFDHPAMA 55 SC+++HPP+ + +P P+RPG CS+YL+ G CKFG TC+FDHP + Sbjct: 251 SCRYNHPPDWLISKTNCALSPMGLPLRPGMQACSFYLQNGHCKFGRTCKFDHPPIV 306
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|674941086|emb|CDX92600.1| (BnaA10g16390D [Brassica napus]) HSP 1 Score: 102.834 bits (255), Expect = 2.385e-21 Identity = 65/198 (32.83%), Postives = 94/198 (47.47%), Query Frame = 0 Query: 2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQ--YAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMG---LPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175 SCK+ HP + T+ L +P+RPGE +CSYY++TG CKFG+TCRF HP A P H L+ G Y G+ +V G ++ + + GM Y G A G +G +P + PQRPGE +C +F+RTG C++G C+FHHPL+ + L+ + Sbjct: 111 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGAQPPSHQQQLSTGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQMVLPPPGMVPYPGWNPYQASLGSQTSIGSSSVPLAHAYQTSLSSNKEQSFPQRPGEPDCQYFMRTGDCKFGTSCRFHHPLEAAPPKGVNLSNI 308
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|976926835|gb|KVI10680.1| (Zinc finger, CCCH-type [Cynara cardunculus var. scolymus]) HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21 Identity = 54/169 (31.95%), Postives = 85/169 (50.30%), Query Frame = 0 Query: 2 SCKFDHPPEAI-QQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQ--YAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAG--GGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKL 165 +CK++HP + + + L PMR G+ C +Y++TG CKFG TC+F HP AP+ + +G Y +G +NG + M G +G + + ++ G + P + LP+RPGE EC +F+ TG C+YG CK+HHP +K+ Sbjct: 114 TCKYNHPRDRRGAEPIVLNMVGLPMRQGQKSCPHYVRTGSCKFGVTCKFHHPQPAPDGSNTPVSGSLTYGPSGAPPHINGSAWSYPSPQTYMPMVIPPAGINQGWSPYIANLNPLLSTNGSGSIDQLYPSTPNSHLPERPGEPECRYFMNTGACKYGTDCKYHHPREKM 282
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|923729239|ref|XP_013667498.1| (PREDICTED: zinc finger CCCH domain-containing protein 58-like [Brassica napus]) HSP 1 Score: 102.064 bits (253), Expect = 4.177e-21 Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 0 Query: 2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQYAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175 SCK+ HP + T+ L +P+RPGE +CSYY++TG CKFG+TCRF HP P + + Y G+ +V G ++ + + GM Y G A G MG + + PQRPGE +C +F+RTG C++G CKFHHPL+ + L+ + Sbjct: 113 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGVQPPSQQLSAGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQIVLPPPGMVPYPGWNPYQASPGSQPSMGSSSVPLAPAYQTS---LSFPQRPGEPDCQYFMRTGDCKFGASCKFHHPLEAASPKGVNLSNI 302
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|1032282009|gb|OAO96337.1| (ZFN3 [Arabidopsis thaliana]) HSP 1 Score: 100.908 bits (250), Expect = 4.550e-21 Identity = 55/168 (32.74%), Postives = 82/168 (48.81%), Query Frame = 0 Query: 1 MSCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQ--YAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDK 164 ++CKF HP I ++ + YP+RP E CSY+L+TG+CKFG TC+F+HP + G Y+ G + A + G+ G+ GG+ G + F A P+RPG+ EC F+++TG C++G CKFHHP D+ Sbjct: 85 VTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRTGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLTGQPSYSWSRTSFVANPPRLQDPSGFASGSQ-GGLFSSGFHSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDR 251 The following BLAST results are available for this feature:
BLAST of EWM30457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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