EWM30457.1, cds217 (CDS) Nannochloropsis gaditana

Overview
NameEWM30457.1
Unique Namecds217
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:546875..546885 -
Alignment locationCM002455.1:545858..546692 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30457.1
Productzinc finger ccch type domain-containing protein zfn-like 3
Orig transcript idgnl|cribi|Naga_100100g23.8925.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:546875..546885 -
CM002455.1supercontigCM002455.1:545858..546692 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|585113119|gb|EWM30456.1| (zinc finger ccch type domain-containing protein zfn-like 3 [Nannochloropsis gaditana])

HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query:    1 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 281
            MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN
Sbjct:   94 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 374          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|585113120|gb|EWM30457.1| (zinc finger ccch type domain-containing protein zfn-like 3 [Nannochloropsis gaditana])

HSP 1 Score: 558.91 bits (1439), Expect = 0.000e+0
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query:    1 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 281
            MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN
Sbjct:    1 MSCKFDHPPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYALPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFICGPGNARTAPPVGSTTPVWAEWRGN 281          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|1142683287|gb|ONM41330.1| (Zinc finger CCCH domain-containing protein 37 [Zea mays])

HSP 1 Score: 104.375 bits (259), Expect = 5.758e-22
Identity = 63/183 (34.43%), Postives = 86/183 (46.99%), Query Frame = 0
Query:    3 CKFDHPPEAIQ--------QTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQ--YAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLAN----------FGAGAPLAQL-PQRPGEKECTFFLRTGRCQYGPRCKFHHPLDK 164
            CKF+HP E +         ++L    T  P+RP E  CS+Y KTGKCKFGA C+F+HP +      +L A +  Y     A     H+GG            V    +   A     +  GLP + + AN           G   P+  + PQRPGE  C F+++TG C+Y   CKFHHP D+
Sbjct:  211 CKFNHPKEMVNALGTRTDNESLIADTTILPVRPSEPVCSFYAKTGKCKFGAVCKFNHPKLEDIKTPSLIAKETIYRATTDAA---AHIGGTD--------DSVPAKTHAPIAPAEAHNAKGLPIRPVSANMVLFVASIILIGQVEPMPMIYPQRPGEIVCDFYMKTGSCKYAQNCKFHHPFDR 382          

HSP 2 Score: 75.8702 bits (185), Expect = 4.946e-12
Identity = 42/139 (30.22%), Postives = 62/139 (44.60%), Query Frame = 0
Query:   23 YPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHP 161
            YP RPG+  C++Y+ TG CK+G TC+FDHP   PE         +              G      +L+         +      M++ +G        N    A    LP RP E  C+F+ +TG+C++G  CKF+HP
Sbjct:  138 YPQRPGQKDCAFYMSTGTCKYGETCKFDHPQWVPEGGVP----NWKEVLNDEDYYPERPGEPDCPYLLSSRCKFKSKCKFNHPKEMVNALG----TRTDNESLIADTTILPVRPSEPVCSFYAKTGKCKFGAVCKFNHP 268          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|685375923|ref|XP_009120963.1| (PREDICTED: zinc finger CCCH domain-containing protein 58-like [Brassica rapa])

HSP 1 Score: 103.219 bits (256), Expect = 1.617e-21
Identity = 66/198 (33.33%), Postives = 94/198 (47.47%), Query Frame = 0
Query:    2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQ--YAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMG---LPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175
            SCK+ HP +      T+ L    +P+RPGE +CSYY++TG CKFG+TCRF HP    A  P H   L+ G   Y       G+           +V    G ++ + +   GM  Y G     A  G    MG   +P         +       PQRPGE +C +F+RTG C++G  C+FHHPL+      + L+ +
Sbjct:  111 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGAQPPSHQQQLSTGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQMVLPPPGMVPYPGWNPYQASPGSQPSMGSSSVPLAPAYQTSLSSNKEQSFPQRPGEPDCQYFMRTGDCKFGASCRFHHPLEAAPPKGVNLSNI 308          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|923786324|ref|XP_013683172.1| (PREDICTED: zinc finger CCCH domain-containing protein 58-like [Brassica napus])

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 66/198 (33.33%), Postives = 94/198 (47.47%), Query Frame = 0
Query:    2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQ--YAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMG---LPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175
            SCK+ HP +      T+ L    +P+RPGE +CSYY++TG CKFG+TCRF HP    A  P H   L+ G   Y       G+           +V    G ++ + +   GM  Y G     A  G    MG   +P         +       PQRPGE +C +F+RTG C++G  C+FHHPL+      + L+ +
Sbjct:  111 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGAQPPSHQQQLSTGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQMVLPPPGMVPYPGWNPYQASPGSQPSMGSSSVPLAPAYQTSLSSNKEQSFPQRPGEPDCQYFMRTGDCKFGASCRFHHPLEAAPPKGVNLSNI 308          

HSP 2 Score: 77.411 bits (189), Expect = 1.944e-12
Identity = 48/140 (34.29%), Postives = 64/140 (45.71%), Query Frame = 0
Query:   23 YPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPL 162
            +P RP E  C YYL+TG C +G+ CRF+HP   P  A  L   +       G     +G     H M            GT   G       P Q+   +          P RPGEKEC++++RTG C++G  C+FHHPL
Sbjct:   42 FPERPDEPDCIYYLRTGVCGYGSRCRFNHP---PNRAPVLGGLRTE----PGEFPERMGQPVCQHFMRT----------GTCKFGASCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPL 164          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|1024016383|gb|KZV35887.1| (Zinc finger C-x8-C-x5-C-x3-H type family protein [Dorcoceras hygrometricum])

HSP 1 Score: 101.679 bits (252), Expect = 1.835e-21
Identity = 67/210 (31.90%), Postives = 93/210 (44.29%), Query Frame = 0
Query:    2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGL---------PGQQM------------------LANFGAGAPLA-----------------QLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKL 165
            SCKF+HP  A      + L    YP+RPGE +CSYYLK+G+CKFGATC+FDHP  A     A     YA       ++     ++     +A   +  G Y   A G ML   G+         PGQ                    ++  G+ AP                   Q P+RPG+  C +++RTG C+YG  C+++HP D L
Sbjct:   52 SCKFNHPKNAGGSLNNVPLNIYGYPLRPGEKECSYYLKSGQCKFGATCKFDHPQPAGSAVPASVRPFYANVQSLSSVSPEQYNSSSTSYRVARPHLVPGSYVAGAYGPMLLHPGVVPISNWNPYPGQLSPTPSPGAQPSAGVTSMYGMSQLGSSAPAVTGAYSQLPSSSNIHKELQFPERPGQPNCNYYMRTGDCKYGSSCRYNHPPDWL 261          

HSP 2 Score: 60.8474 bits (146), Expect = 4.269e-7
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    2 SCKFDHPPEAIQQTLQLQATP--YPMRPGELQCSYYLKTGKCKFGATCRFDHPAMA 55
            SC+++HPP+ +        +P   P+RPG   CS+YL+ G CKFG TC+FDHP + 
Sbjct:  251 SCRYNHPPDWLISKTNCALSPMGLPLRPGMQACSFYLQNGHCKFGRTCKFDHPPIV 306          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|674941086|emb|CDX92600.1| (BnaA10g16390D [Brassica napus])

HSP 1 Score: 102.834 bits (255), Expect = 2.385e-21
Identity = 65/198 (32.83%), Postives = 94/198 (47.47%), Query Frame = 0
Query:    2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQ--YAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMG---LPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175
            SCK+ HP +      T+ L    +P+RPGE +CSYY++TG CKFG+TCRF HP    A  P H   L+ G   Y       G+           +V    G ++ + +   GM  Y G     A  G    +G   +P         +       PQRPGE +C +F+RTG C++G  C+FHHPL+      + L+ +
Sbjct:  111 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGAQPPSHQQQLSTGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQMVLPPPGMVPYPGWNPYQASLGSQTSIGSSSVPLAHAYQTSLSSNKEQSFPQRPGEPDCQYFMRTGDCKFGTSCRFHHPLEAAPPKGVNLSNI 308          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|976926835|gb|KVI10680.1| (Zinc finger, CCCH-type [Cynara cardunculus var. scolymus])

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 54/169 (31.95%), Postives = 85/169 (50.30%), Query Frame = 0
Query:    2 SCKFDHPPEAI-QQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQ--YAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAG--GGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKL 165
            +CK++HP +    + + L     PMR G+  C +Y++TG CKFG TC+F HP  AP+ +    +G   Y  +G    +NG           + M     G  +G +     +  ++   G   +       P + LP+RPGE EC +F+ TG C+YG  CK+HHP +K+
Sbjct:  114 TCKYNHPRDRRGAEPIVLNMVGLPMRQGQKSCPHYVRTGSCKFGVTCKFHHPQPAPDGSNTPVSGSLTYGPSGAPPHINGSAWSYPSPQTYMPMVIPPAGINQGWSPYIANLNPLLSTNGSGSIDQLYPSTPNSHLPERPGEPECRYFMNTGACKYGTDCKYHHPREKM 282          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|923729239|ref|XP_013667498.1| (PREDICTED: zinc finger CCCH domain-containing protein 58-like [Brassica napus])

HSP 1 Score: 102.064 bits (253), Expect = 4.177e-21
Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 0
Query:    2 SCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHP----AMAPEHATALAAGQYAGAGGAGGM---------NGHVGGAAGMHAMLAMGRVGMGYYEG----TAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDKLQGALMGLNGV 175
            SCK+ HP +      T+ L    +P+RPGE +CSYY++TG CKFG+TCRF HP       P    +  +  Y       G+           +V    G ++ + +   GM  Y G     A  G    MG     +   +         PQRPGE +C +F+RTG C++G  CKFHHPL+      + L+ +
Sbjct:  113 SCKYHHPRQRGGDSVTVSLNYMGFPLRPGEKECSYYMRTGHCKFGSTCRFHHPLPPGVQPPSQQLSAGSAIYPSLQSQSGVFVARPQLLPGSYVQSPYGTYSQIVLPPPGMVPYPGWNPYQASPGSQPSMGSSSVPLAPAYQTS---LSFPQRPGEPDCQYFMRTGDCKFGASCKFHHPLEAASPKGVNLSNI 302          
BLAST of EWM30457.1 vs. NCBI_GenBank
Match: gi|1032282009|gb|OAO96337.1| (ZFN3 [Arabidopsis thaliana])

HSP 1 Score: 100.908 bits (250), Expect = 4.550e-21
Identity = 55/168 (32.74%), Postives = 82/168 (48.81%), Query Frame = 0
Query:    1 MSCKFDHPPEA--IQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPEHATALAAGQ--YAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGGMLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCKFHHPLDK 164
            ++CKF HP     I  ++ +    YP+RP E  CSY+L+TG+CKFG TC+F+HP     +      G   Y+      G   +        A     +   G+  G+  GG+       G  +   F A       P+RPG+ EC F+++TG C++G  CKFHHP D+
Sbjct:   85 VTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRTGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLTGQPSYSWSRTSFVANPPRLQDPSGFASGSQ-GGLFSSGFHSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDR 251          
The following BLAST results are available for this feature:
BLAST of EWM30457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113119|gb|EWM30456.1|0.000e+0100.00zinc finger ccch type domain-containing protein zf... [more]
gi|585113120|gb|EWM30457.1|0.000e+0100.00zinc finger ccch type domain-containing protein zf... [more]
gi|1142683287|gb|ONM41330.1|5.758e-2234.43Zinc finger CCCH domain-containing protein 37 [Zea... [more]
gi|685375923|ref|XP_009120963.1|1.617e-2133.33PREDICTED: zinc finger CCCH domain-containing prot... [more]
gi|923786324|ref|XP_013683172.1|1.733e-2133.33PREDICTED: zinc finger CCCH domain-containing prot... [more]
gi|1024016383|gb|KZV35887.1|1.835e-2131.90Zinc finger C-x8-C-x5-C-x3-H type family protein [... [more]
gi|674941086|emb|CDX92600.1|2.385e-2132.83BnaA10g16390D [Brassica napus][more]
gi|976926835|gb|KVI10680.1|3.873e-2131.95Zinc finger, CCCH-type [Cynara cardunculus var. sc... [more]
gi|923729239|ref|XP_013667498.1|4.177e-2132.12PREDICTED: zinc finger CCCH domain-containing prot... [more]
gi|1032282009|gb|OAO96337.1|4.550e-2132.74ZFN3 [Arabidopsis thaliana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna217rna217Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications