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Properties
| Property Name | Value |
|---|
| Product | HPP family protein |
| Orig transcript id | gnl|cribi|Naga_100131g9.7461.mrna |
| Orig protein id | gnl|cribi|Naga_100131g9.7461 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1052381..1054435 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2165 ID=rna2165|Name=rna2165|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp
ACGACACGGACACGACGGGAGGATGGGAAATATCGTGCGAATCTTGCCTC
ATTCACAGGCCCTCCCCGCTCTGCCCGCGTCGAGAGAGCGCACGACGAGA
TCCTTCCCTTGTCATGACTGATATATGGACTCTATCGGTTGCATTCGACG
CATTTCCATGTATTTTGTATGAATTCGTGACTGTGACCATGGCATTTTCC
TCATTTCCTCCCACTTCAACAAGAGTTGACGCCTCTCCCCCGTTCCTCGC
GACCCCCCAGGCACGCCCTCTGGCTTGCCAATACGCCTGCAATCATGCAG
CCCCCAGAAACAAGATTGTACCATTAGATTCAGCGGTAGTCTCTGTCACG
AGTTTTGGATATTTTCAAGTATGCGCAACTTTTCATTCTTGTATTTGCTT
TGCGTTTTGGCGCCGATCGTCGACCATGAGGCAAGTTGGTGTCGAGGAGT
GAAAGCGACCTCAGTCGACACCTCGTCCGGATTCGCACACGTTCGACCGG
CTAGTCTTGTACTTCCTTCAACACAACGACCGCATGTGATAGCGCATAGA
GGTGCCTGTGGGTATTTACCAGAGCACACGCTGCAAGCGTACCGTCTCGC
CATCGATCTAGGCGTGGAGTATATCGAACCCGATCTCGTTCTCACCAAGG
ACGGGCACTTGATCTGTCGTCACGATGTGGACCTTTCAGAAACCACAGAC
GTCTCCCTTCGGCCCGAATTCGCAGGGCGGCGGCGCAATATCACCTTCCC
CTCAGAGGTGGCCGTCAGAGATCCTGACACAGGGGCAGCTCCCCTCGTAT
CTGTGGAGGGCTTCTTCTCCTTTGATTTCACCTTGGCTGAAATTAAAACC
CTGCGTGCGAAACAACGCCTAACTCAACGGAGTTCCACGTACAATGGTCT
GTTCCAAGTACCCACGCTGGAGGAGGTTGTGGACATGGTCCGGGAGGCGG
AGGGAGCGACGGGGCGGAAGGTGGGAATCTATGCAGAGCTCAAGGAGCCG
TATTTTTTCCACTTGAACGGCTTCGACATTGAGAGCAAGGTGGTGGAAGT
CTTACAGACGAAAGATTTGGGAGTCCGCTCTTCCCTTCCCCACCTTGTCC
CCGGCCCCGACGTCCCCGCCCCCCTGGTCCTGCAGTGCTTTGACCCCTAT
ACCCTCCGACGCCTTGCCCAGAGGATACCCCACGTTCCCCTTGTGCAGTT
GCTGCTCTCTCCGCTTTCAAAAGAGCATTCCTCTGTGGGACAAGGTGTCA
GCCATCATTTGGGTCGGGAAGCGACCTTCGGCGACATGACGTTGCCGGAG
ATCGCCGCCTACGCATCGGGCATTGGACCCGCCAAAAGCGTCTTTACCTC
CATGGATCCCGCAGTAGCCAGAGCCGTGGTGGATGAGGCACATGAACTTG
ATCTAGCCGTGCATCCGTGGACTTTTAGGCGCGAGGCGATGTATGTGGAC
ACGCCGTTCCAAGCGGATTCGGACGAAGAGTTGCGATTCTTTTTTGAAAG
TTTAAATGTGGATGCCCTCTTCGTTGAATTTCCGGATCAAGCGTCCATGG
TTATCGAAAAGATGCTGTCGGATGATAGCGAGGCGGGTTTGGAGGACGTG
AGCCCGGAGATTGCCCAGGCGGCCTCAGCTGCGGCGCGGAGCTCAACTCT
ATCGACAGCGCCGTTGCCCTCCCGACGGGGACGGTCAAGTCGTAGTAATC
GCAGCAGCAGTAGCAGCCATGCGAAAACAGGGAGAGAGGCACCGGCTTTC
TCGGTAACGAATGGCAAGACGAGCGCTCCGAAGGACGTGATGGCCGAAAT
AGACACGATGTGGTCATCTGCCCTGTCTGCACTGAGGTCGCTTGCGGGCA
GTGTGGTTGGTGGGAAGGATGGGAGTTCGTGGGTGGAAGGTGGGGTTTGT
GGGGGAGAAAGAGATGCCGACACGTCTTCGTGTCAGCCTGGGGCCTGCTC
AGTGGATGGAGTCGCCGACGCCGTCTATCGCCTGCCCTACCTTGCTGTGC
CATGGCTCCGTCGGAAAGCAGCTTGAAACAACGTTGAACAGGCGTTTGTC
AGGGAGGGAGAACGAGTTGTGACGCGAAAGAGGTGTATTTTGTTTGAATC
CACAGAGAGCGAGTCAGGAGATGTGTGATCATCGCTTTGACCACGTCCTC
AACAGTGTGGGAGTACGCTATGTTTGCTTGTTTGAAGGAATGGACTGGAA
TGTGCAGAAGACACGCGAGTATTCATATCCCTTGGGAGAAAAATAGAGAG
AAGCAGTGTAGCCCCGCATCCTTGCGTGCGCGCAGCAACAAGTGTGATTG
AAAACTTGCAAAAAATTGAGCTGGAAATGCCCGCACAAGGAAGGCGTCAC
CCTCGACGCAATCCGGCCTGTGGGGATGGAAAGGAAGTTGCCTCGCGGCG
CGAAGCAACAAATCTCATCAGGAGGTGGAGGGTACTTGTGAGAGTCGTTG
TACCGCTCCACCTCTTTATTGCTCTGATGTAAGACACCCCACTTCGGTGC
CCCCCCAGTGGTTTGGTAAACTAATAGAGAGCGCGCGATCGTTGCTGAAA
GCGGTCAACATCAGCATCTTACAAAAAAGGAAGAAATGTACACATTGTCT
TGTGAATCTTGGGATCTTTGCCTTGGACACTCGTTGTCTTTTATTTTCCT
CGTAGGGTGTGACACTTTTAAATAAGCGCTCATTTCGGAAAAGATGGCCA
AACTCATGAATCGCATCGGAGGGAAGGTTTTTCCGAAGCGAAACGCTTGA
GAAGTAAAAGTAGAAACTAGAGCTCTCATGATAACTGTAG back to topprotein sequence of rna2165 >rna2165-protein ID=rna2165-protein|Name=rna2165|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MGLPHFHKDNDVQRRNVCNDSSPKSSGSGKEGREVVGSMAKEFLTQYLSK
WLGVPGRKDGNRAPSLRHSFVSLFQATLSISVLAFLDMGMTISAEDFMFL
VGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLS
AGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCT
GAFMMLVVALVCNNMDPERVYPQYWSDNFPIWHTCRQILGGRCGDCGRKA
NRAEEEEDSASSRSTSPRRYPRVASIELVDDLDAPAETPPGSPRWRAVTM
PSPGHASTRTGAGGHVVDPVVLEEEDTAFPV back to topmRNA from alignment at CM002458.1:1052381..1054435- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2165 ID=rna2165|Name=rna2165|organism=Nannochloropsis gaditana|type=mRNA|length=2055bp|location=Sequence derived from alignment at CM002458.1:1052381..1054435- (Nannochloropsis gaditana)
ATCGGGAAACTGCAATAAAATCTAGCATAAGTCCAAAACCCACCACCCTC
GCCACCGAACCGAAGATATGGCTGTCCTTGCCACGAGATTGCCTGTGTCC
ACGACGTGTATGAACGTGCCGCAGTGCCACCGTGTCCGACCTCCTCCTCT
TTTTCTGGGCTTATTTATTGTTATGGCTTTTTGCATGTCATGTTGACCCT
GTTCGTGGCCCTTCCCGTGCTACACAGAGGCCCCTCTACTTTGAATGAAA
TTTCTGCACATCTCGCATTTGTTTCCGTTGTCCCATATTACCACACTCAC
AAGCACAGGATTTTCTTTGAAGTAAGGATAGAAGTTTTTGGTCGAAAACG
CATGCGCTCTCTTCACCCATTGAATTGAAGGCTTCAAAGTTCCAACCTCA
AGGAATTGAGCACCCAACCGCACAGTCAAACATGGGTCTCCCGCACTTTC
ACAAAGACAACGACGTGCAACGAAGAAATGTTTGCAATGACAGCAGTCCC
AAAAGCAGTGGCAGTGGCAAGGAAGGGCGTGAAGTGGTCGGGAGCATGGC
CAAGTAAGTGCCAGGGATGGCTTGCACATGTCTCGAAAAGGATGAAAGCT
TGCAAATTCGTATGAAAGAGATGTATGGCTATCTACAGAAACACAGAGGG
AGATCAATGAAGGAAATGGGCAGACGCGATCGTGGATCGAAGAATATTTT
CCCTGTATGCTCCCTCAGGAATCGTGTTGGCTAGGTCCATCCAGTCTCTC
ATGTGCGGCTCTCTATACCGGTACCACTCACATCAACAGGGAGTTCCTGA
CTCAGTATTTGAGCAAATGGCTGGGCGTCCCTGGGAGGAAAGATGGGAAT
CGGGCCCCGTCACTCCGGCACAGCTTCGTCTCGCTCTTCCAAGCCACCCT
GAGCATCTCCGTCCTGGCTTTCCTGGACATGGGCATGACCATCAGCGCGG
AAGACTTCATGTTCCTGGTGGGATCCTTCGGTGCCACAGCCGTCCTCCTC
TATTCCGCGCATGGCTCTCCTCTGGCCCAGCCCCGCAACGTCATGGGGGG
GCACTTCGTCTCCTCTTTGGCCGGTGTCACGGTGTACAAAGTGATTGGGA
ACGTCCCGTACCTGTCAGCAGGGCTGGCGGTAGGCTTGGCTATTTTTTGC
ATGGAACGGACGAACACCCTCCACCCGCCGGGGGGTGCCACAGCGCTTGT
GGCGATCGTGGGAGGGGAGGCGGTGACGAGGGCGGGGTATTGGTATGTGC
TTTTCCCCTGTTGCACCGGGGCTTTCATGATGCTTGTCGTCGCCCTAGTA
TGCAACAACATGGACCCGGAGCGGGTGTACCCGCAGTACTGGAGCGACAA
CTTTCCCATCTGGCACACGTGTCGCCAGATACTCGGAGGCAGATGTGGGG
ACTGCGGGAGGAAGGCCAACCGTGCTGAGGAGGAAGAGGACTCGGCGTCC
TCCCGCTCGACCTCGCCACGCCGGTATCCCCGCGTGGCCTCCATCGAACT
GGTGGACGATCTCGATGCGCCTGCAGAGACACCACCAGGATCGCCCAGAT
GGAGAGCAGTGACCATGCCCAGCCCGGGCCATGCGTCCACGAGGACAGGG
GCGGGCGGTCATGTGGTAGACCCGGTCGTGCTGGAAGAAGAGGATACTGC
CTTTCCTGTGTAGCTTAATGTTCGCTTCTCGCGCACTCGGACGTGAGAGG
GGGCCGGGGAAGCACGTATGACCATGTAATTGTTTCACTTCACAAAGTTT
GCTTTTGGGGGGGGGGAAGAAAGCAAGTTGATCTGCGCCGAAGAGCGATT
TTCAGAGGTGTCTGCCTCTGCATAAATATTCTTTAAAATCAAGTCACACT
TGGCCCGATGTCAGCGTGTTGGACGCAGGTACTCAACAACTACAGTTATC
ATGAGAGCTCTAGTTTCTACTTTTACTTCTCAAGCGTTTCGCTTCGGAAA
AACCTTCCCTCCGATGCGATTCATGAGTTTGGCCATCTTTTCCGAAATGA
GCGCTTATTTAAAAGTGTCACACCCTACGAGGAAAATAAAAGACAACGAG
TGTCC back to topCoding sequence (CDS) from alignment at CM002458.1:1052381..1054435- >rna2165 ID=rna2165|Name=rna2165|organism=Nannochloropsis gaditana|type=CDS|length=1992bp|location=Sequence derived from alignment at CM002458.1:1052381..1054435- (Nannochloropsis gaditana)
GGAGTTCCTGACTCAGTATTTGAGCAAATGGCTGGGCGTCCCTGGGAGGA
AAGATGGGAATCGGGCCCCGTCACTCCGGCACAGCTTCGTCTCGCTCTTC
CAAGCCACCCTGAGCATCTCCGTCCTGGCTTTCCTGGACATGGGCATGAC
CATCAGCGCGGAAGACTTCATGTTCCTGGTGGGATCCTTCGGTGCCACAG
CCGTCCTCCTCTATTCCGCGCATGGCTCTCCTCTGGCCCAGCCCCGCAAC
GTCATGGGGGGGCACTTCGTCTCCTCTTTGGCCGGTGTCACGGTGTACAA
AGTGATTGGGAACGTCCCGTACCTGTCAGCAGGGCTGGCGGTAGGCTTGG
CTATTTTTTGCATGGAACGGACGAACACCCTCCACCCGCCGGGGGGTGCC
ACAGCGCTTGTGGCGATCGTGGGAGGGGAGGCGGTGACGAGGGCGGGGTA
TTGGTATGTGCTTTTCCCCTGTTGCACCGGGGCTTTCATGATGCTTGTCG
TCGCCCTAGTATGCAACAACATGGACCCGGAGCGGGTGTACCCGCAGTAC
TGGAGCGACAACTTTCCCATCTGGCACACGTGTCGCCAGATACTCGGAGG
CAGATGTGGGGACTGCGGGAGGAAGGCCAACCGTGCTGAGGAGGAAGAGG
ACTCGGCGTCCTCCCGCTCGACCTCGCCACGCCGGTATCCCCGCGTGGCC
TCCATCGAACTGGTGGACGATCTCGATGCGCCTGCAGAGACACCACCAGG
ATCGCCCAGATGGAGAGCAGTGACCATGCCCAGCCCGGGCCATGCGTCCA
CGAGGACAGGGGCGGGCGGTCATGTGGTAGACCCGGTCGTGCTGGAAGAA
GAGGATACTGCCTTTCCTGTGTAGATGGGTCTCCCGCACTTTCACAAAGA
CAACGACGTGCAACGAAGAAATGTTTGCAATGACAGCAGTCCCAAAAGCA
GTGGCAGTGGCAAGGAAGGGCGTGAAGTGGTCGGGAGCATGGCCAAGGAG
TTCCTGACTCAGTATTTGAGCAAATGGCTGGGCGTCCCTGGGAGGAAAGA
TGGGAATCGGGCCCCGTCACTCCGGCACAGCTTCGTCTCGCTCTTCCAAG
CCACCCTGAGCATCTCCGTCCTGGCTTTCCTGGACATGGGCATGACCATC
AGCGCGGAAGACTTCATGTTCCTGGTGGGATCCTTCGGTGCCACAGCCGT
CCTCCTCTATTCCGCGCATGGCTCTCCTCTGGCCCAGCCCCGCAACGTCA
TGGGGGGGCACTTCGTCTCCTCTTTGGCCGGTGTCACGGTGTACAAAGTG
ATTGGGAACGTCCCGTACCTGTCAGCAGGGCTGGCGGTAGGCTTGGCTAT
TTTTTGCATGGAACGGACGAACACCCTCCACCCGCCGGGGGGTGCCACAG
CGCTTGTGGCGATCGTGGGAGGGGAGGCGGTGACGAGGGCGGGGTATTGG
TATGTGCTTTTCCCCTGTTGCACCGGGGCTTTCATGATGCTTGTCGTCGC
CCTAGTATGCAACAACATGGACCCGGAGCGGGTGTACCCGCAGTACTGGA
GCGACAACTTTCCCATCTGGCACACGTGTCGCCAGATACTCGGAGGCAGA
TGTGGGGACTGCGGGAGGAAGGCCAACCGTGCTGAGGAGGAAGAGGACTC
GGCGTCCTCCCGCTCGACCTCGCCACGCCGGTATCCCCGCGTGGCCTCCA
TCGAACTGGTGGACGATCTCGATGCGCCTGCAGAGACACCACCAGGATCG
CCCAGATGGAGAGCAGTGACCATGCCCAGCCCGGGCCATGCGTCCACGAG
GACAGGGGCGGGCGGTCATGTGGTAGACCCGGTCGTGCTGGAAGAAGAGG
ATACTGCCTTTCCTGTGTAGATGGGTCTCCCGCACTTTCACAAAGACAAC
GACGTGCAACGAAGAAATGTTTGCAATGACAGCAGTCCCAAAAGCAGTGG
CAGTGGCAAGGAAGGGCGTGAAGTGGTCGGGAGCATGGCCAA back to top
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