EWM28516.1, cds2157 (CDS) Nannochloropsis gaditana

Overview
NameEWM28516.1
Unique Namecds2157
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1053883..1054004 -
Alignment locationCM002458.1:1052773..1053646 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28516.1
ProductHPP family protein
Orig transcript idgnl|cribi|Naga_100131g9.7461.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1053883..1054004 -
CM002458.1supercontigCM002458.1:1052773..1053646 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007065HPP
Homology
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|585110933|gb|EWM28516.1| (HPP family protein [Nannochloropsis gaditana])

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MGLPHFHKDNDVQRRNVCNDSSPKSSGSGKEGREVVGSMAKEFLTQYLSKWLGVPGRKDGNRAPSLRHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQYWSDNFPIWHTCRQILGGRCGDCGRKANRAEEEEDSASSRSTSPRRYPRVASIELVDDLDAPAETPPGSPRWRAVTMPSPGHASTRTGAGGHVVDPVVLEEEDTAFPV 331
            MGLPHFHKDNDVQRRNVCNDSSPKSSGSGKEGREVVGSMAKEFLTQYLSKWLGVPGRKDGNRAPSLRHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQYWSDNFPIWHTCRQILGGRCGDCGRKANRAEEEEDSASSRSTSPRRYPRVASIELVDDLDAPAETPPGSPRWRAVTMPSPGHASTRTGAGGHVVDPVVLEEEDTAFPV
Sbjct:    1 MGLPHFHKDNDVQRRNVCNDSSPKSSGSGKEGREVVGSMAKEFLTQYLSKWLGVPGRKDGNRAPSLRHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQYWSDNFPIWHTCRQILGGRCGDCGRKANRAEEEEDSASSRSTSPRRYPRVASIELVDDLDAPAETPPGSPRWRAVTMPSPGHASTRTGAGGHVVDPVVLEEEDTAFPV 331          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|739439177|ref|WP_037299209.1| (HPP family protein [Runella limosa])

HSP 1 Score: 172.94 bits (437), Expect = 2.845e-49
Identity = 81/155 (52.26%), Postives = 113/155 (72.90%), Query Frame = 0
Query:   68 HSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYP 222
             +F S   A L I ++AFL    T+S  D +FL+GSFGA++VL++ A  SPLAQPRN++GGH +S++ GVT+Y+V  N+ + +A LAV L+I CM+ T TLHPPGGATAL+A++G E +   GYW+VL P  TG F++L+VAL+ NN+ P R YP
Sbjct:   27 ENFWSFTGAFLGIGLIAFLQT--TLSEVDNLFLIGSFGASSVLIFGAIQSPLAQPRNLVGGHLISAVLGVTIYQVFPNIIWFTAPLAVSLSILCMQITKTLHPPGGATALIAVIGSEKIKHLGYWFVLSPVATGVFILLIVALIFNNLTPNRKYP 179          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|496348601|ref|WP_009057779.1| (HPP family protein, partial [Nitritalea halalkaliphila] >gi|389660337|gb|EIM72029.1| HPP family protein [Nitritalea halalkaliphila LW7])

HSP 1 Score: 166.392 bits (420), Expect = 1.385e-46
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 0
Query:   67 RHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQ--YWSDNF-----PIWHTCRQILGGRCGDCGRKA 250
            R  F S   A L I ++AF+   +  +  D +FL+GSFGAT VL+Y    SPLAQPRN++GGH VS++ GVTV++++ ++ +L+A LAV L+I  M+ T TLHPPGGATAL+A+ G E++   GY YVLFP  +G  ++L+VAL+ NNM  +R YP    +S NF     PI    ++I   R     +KA
Sbjct:   26 REKFWSFIGAFLGIGIIAFIQ-SIYFTESDNLFLIGSFGATCVLIYGVIQSPLAQPRNLIGGHLVSAIIGVTVFQLLPDIIWLTAPLAVALSIIGMQYTKTLHPPGGATALIAVSGSESIKDLGYLYVLFPVLSGVVILLLVALIVNNMTSQREYPSDGRFSRNFKWFIDPIRDQSQRIKQKRNNRKNKKA 215          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|1011242557|ref|WP_062161535.1| (HPP family protein [Chryseobacterium sp. IHB B 17019] >gi|959197339|gb|ALR30538.1| HPP family protein [Chryseobacterium sp. IHB B 17019])

HSP 1 Score: 160.614 bits (405), Expect = 1.439e-44
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 0
Query:   67 RHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQY 224
            +  F S   A   I ++AF+    T+SA + +FL+GSFGA++VL+Y A  SPLAQPRN++GGH +S+L GVTVYK++ ++ +LSA LAV  +I  M+ T TLHPPGGATAL+A+     +   G+WYVL P  TG  ++L+VAL  NN+ P R YP +
Sbjct:   25 KEHFWSFLGAFFGIGIIAFIQ-SHTLSATENIFLIGSFGASSVLIYGAIQSPLAQPRNLVGGHVISALVGVTVYKIVPDIIWLSAPLAVAFSIVLMQYTKTLHPPGGATALIAVSSTGKIPELGFWYVLSPVLTGCIILLIVALFFNNITPNRSYPTH 181          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|1211975204|ref|WP_088554995.1| (HPP family protein [Calderihabitans maritimus] >gi|1205307356|dbj|GAW93961.1| HPP family protein [Calderihabitans maritimus])

HSP 1 Score: 159.458 bits (402), Expect = 1.665e-44
Identity = 81/170 (47.65%), Postives = 110/170 (64.71%), Query Frame = 0
Query:   56 GRKDGNRAPSLRHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQYW 225
            GR+      S      S   + L IS + F+     +   D   ++GSFGA+AVL+Y+A  SPLAQPRN+M GH +S+L GVT YK++ +VP+LSA LAV LAI  M  T +LHPPGGATAL+A++GG  +   GY YV+ P   GA  ML +AL+CNN+  +R YP++W
Sbjct:   10 GRQKSPERESAYEILWSWIGSFLGISAVGFISQKW-LEPRDLTLIIGSFGASAVLIYAAIKSPLAQPRNLMLGHIISALVGVTCYKLV-SVPWLSAALAVSLAIVAMHLTKSLHPPGGATALIAVIGGPKIHALGYLYVIIPVGLGALTMLCIALICNNLAEKRRYPEFW 177          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|652298977|ref|WP_026709379.1| (HPP family protein [Flavobacterium frigidarium])

HSP 1 Score: 160.229 bits (404), Expect = 1.780e-44
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = 0
Query:   69 SFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQY 224
            SFV  F   L I +LA+L    T++  D +FL+GSFGA++VL+Y    SPL+QPRN++GGH +S++ GVT+ K++ +V +L++ LAV ++I  M+ T TLHPPGGATAL+A+ G   +   GYWYV+ P   G  ++LV+ALV NNM P R YP +
Sbjct:   31 SFVGSF---LGIGILAYLQ-SRTLADSDVLFLIGSFGASSVLIYGVIQSPLSQPRNLVGGHIISAIVGVTIAKLVPDVIWLASALAVSISIILMQITKTLHPPGGATALIAVTGSAHIKALGYWYVISPVLIGVLILLVIALVVNNMTPNRYYPNH 182          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|1085079845|gb|OGS78997.1| (HPP family protein [Fluviicola sp. RIFCSPHIGHO2_02_FULL_43_260] >gi|1085087144|gb|OGS86019.1| HPP family protein [Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24] >gi|1085087556|gb|OGS86428.1| HPP family protein [Fluviicola sp. RIFCSPHIGHO2_01_FULL_43_53])

HSP 1 Score: 159.844 bits (403), Expect = 2.734e-44
Identity = 77/156 (49.36%), Postives = 111/156 (71.15%), Query Frame = 0
Query:   67 RHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYP 222
            +  F S   A + I ++AF+    T++ ++ +FL+GSFGA++VL+Y A  SPLAQPRN++GGH +S+L GVTVY+ I +V +L+A +AV  +I  M+ T TLHPPGGATAL+A++G E +   GY+YVL P  TG+ ++L VAL+ NNM   R YP
Sbjct:   26 KEHFWSFIGAFVGIGIIAFVQ-SYTLTKDENIFLIGSFGASSVLIYGAIQSPLAQPRNLVGGHVISALIGVTVYRFIPDVIWLTAPMAVAFSIVAMQVTKTLHPPGGATALIAVIGSEKIKALGYFYVLSPVLTGSLILLAVALIFNNMTTHRKYP 180          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|499904648|ref|WP_011585382.1| (HPP family protein [Cytophaga hutchinsonii] >gi|110281079|gb|ABG59265.1| CBS-domain-containing membrane protein [Cytophaga hutchinsonii ATCC 33406] >gi|1104039899|emb|SFX33048.1| HPP family protein [Cytophaga hutchinsonii ATCC 33406])

HSP 1 Score: 159.458 bits (402), Expect = 3.353e-44
Identity = 77/156 (49.36%), Postives = 108/156 (69.23%), Query Frame = 0
Query:   67 RHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYP 222
            + +F S   A + I ++ FL   +    E+ +FL+GSFGAT+VL++ A  SPL+QPRN++GGH +S++ GVT YK+  ++ ++SA  AV  +I  M+ T TLHPPGGATAL+A++G E +   GYWYVL P  TG F+MLVVAL+ NNM   R YP
Sbjct:   26 KENFWSFIGAFVGIGLIGFLQSKIVTDIEN-VFLIGSFGATSVLVFGAIQSPLSQPRNLIGGHVISAVVGVTAYKLFPDMLWISAPFAVSFSIVLMQITKTLHPPGGATALIAVIGSEKIKHLGYWYVLSPVLTGCFIMLVVALIFNNMTSHRSYP 180          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|1054563084|ref|WP_066332371.1| (HPP family protein [Flavobacterium crassostreae] >gi|1044463834|gb|OCB77970.1| HPP family protein [Flavobacterium crassostreae])

HSP 1 Score: 159.458 bits (402), Expect = 3.431e-44
Identity = 73/156 (46.79%), Postives = 111/156 (71.15%), Query Frame = 0
Query:   67 RHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYP 222
            +  F S   A + I ++AF    + ++ E+ +FL+GSFGA++VL+Y A  SPLAQPRN++GGH +S+  GVT+YK++ ++ +L+A LAV L+I  M+ T TLHPPGGATAL+A++G E +   GY+Y+L P  TG  ++ ++AL+ NN+ P R YP
Sbjct:   26 KEHFWSFIGAFIGIGLIAFFQHHI-LTKEENIFLIGSFGASSVLIYGAIQSPLAQPRNLIGGHLISAFIGVTIYKLLPDIIWLTAPLAVALSIVAMQITKTLHPPGGATALIAVIGSEKIKTLGYFYLLSPVFTGTMILFIIALIFNNITPHRKYP 180          
BLAST of EWM28516.1 vs. NCBI_GenBank
Match: gi|492834945|ref|WP_005988899.1| (HPP family protein [Desulfovibrio africanus] >gi|459315294|gb|EMG36076.1| CBS-domain-containing membrane protein [Desulfovibrio africanus PCS])

HSP 1 Score: 159.458 bits (402), Expect = 4.932e-44
Identity = 93/209 (44.50%), Postives = 126/209 (60.29%), Query Frame = 0
Query:   19 NDSSPKSSGSGKEGR--EVVGSMAKEFLTQYLSKWLGVPGRKDGNRAPSLRHSFVSLFQATLSISVLAFLDMGMTISAEDFMFLVGSFGATAVLLYSAHGSPLAQPRNVMGGHFVSSLAGVTVYKVIGNVPYLSAGLAVGLAIFCMERTNTLHPPGGATALVAIVGGEAVTRAGYWYVLFPCCTGAFMMLVVALVCNNMDPERVYPQYW 225
            N   P ++   +  R  E  G+  +E + +YL+K   + G+      P LR    S   A L I  ++FL   M       M LVGSFGA+AVL+Y A  SPLAQPRN++GGH +S+L GVT+ K++ +  +++A LAV  +I  M  T TLHPPGGATAL+A++GGE V   G+ Y L P   GA +MLVVALV NN+ P R YP +W
Sbjct:    3 NKDIPTATLDSRSLRPEECEGNSCRESVLRYLTK---MRGKSVAPPCPCLREVCWSWLGAFLGIFAVSFLSHKMMDGTGPLM-LVGSFGASAVLIYGAVESPLAQPRNLLGGHVLSALVGVTIAKLLPDAVWIAAPLAVATSIAAMHVTRTLHPPGGATALIAVIGGEPVRALGFMYALAPVGLGALIMLVVALVVNNLSPRRCYPVFW 207          
The following BLAST results are available for this feature:
BLAST of EWM28516.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110933|gb|EWM28516.1|0.000e+0100.00HPP family protein [Nannochloropsis gaditana][more]
gi|739439177|ref|WP_037299209.1|2.845e-4952.26HPP family protein [Runella limosa][more]
gi|496348601|ref|WP_009057779.1|1.385e-4645.55HPP family protein, partial [Nitritalea halalkalip... [more]
gi|1011242557|ref|WP_062161535.1|1.439e-4449.37HPP family protein [Chryseobacterium sp. IHB B 170... [more]
gi|1211975204|ref|WP_088554995.1|1.665e-4447.65HPP family protein [Calderihabitans maritimus] >gi... [more]
gi|652298977|ref|WP_026709379.1|1.780e-4448.72HPP family protein [Flavobacterium frigidarium][more]
gi|1085079845|gb|OGS78997.1|2.734e-4449.36HPP family protein [Fluviicola sp. RIFCSPHIGHO2_02... [more]
gi|499904648|ref|WP_011585382.1|3.353e-4449.36HPP family protein [Cytophaga hutchinsonii] >gi|11... [more]
gi|1054563084|ref|WP_066332371.1|3.431e-4446.79HPP family protein [Flavobacterium crassostreae] >... [more]
gi|492834945|ref|WP_005988899.1|4.932e-4444.50HPP family protein [Desulfovibrio africanus] >gi|4... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2165rna2165Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications