rna216, rna216 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna216
Unique Name	rna216
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1129
Alignment location	CM002455.1:545813..547771 -

Link to JBrowse

Properties


Property Name	Value
Product	zinc finger ccch type domain-containing protein zfn-like 3
Orig transcript id	gnl\|cribi\|Naga_100100g23.8924.mrna
Orig protein id	gnl\|cribi\|Naga_100100g23.8924
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:545813..547771 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100100g23	gene207	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna216	rna216-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30456.1	cds216	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:545813..547771-
coding sequence from alignment at CM002455.1:545813..547771-

mRNA sequence

>rna216 ID=rna216|Name=rna216|organism=Nannochloropsis gaditana|type=mRNA|length=1129bp
CGGAGTGGGAGCTCAGGCGGATGGCCAGTATGCCGGAGGATATGCGGAAG
GAGCCCACTTGTACGGAACCCAGCAACAGGGATATACAGGAGCGACCTCG
GGGACCTATGAAGGGGGCGGGGCCGGCAGTAGGGGCGGGGGAGGGGGAGG
GGGGGCAGCCAATGGGGGATATCACGCGGCCGAGGTCTACCAGCAAGCCT
TCGTAGGTTACCCCGCCCAGCATCACCAGTATGGAGGCCCATCGGCTGTC
TATGGTAACTACCGTCAGGCCTCGTGAGGGGGGGGGGGGCACGGAGAAGC
AGGGGGGGCGCCGAGACGGGTCAGTGGACGGAGGTGGCTCGCTTTGTCAG
GATGTGGACGGGTAGAGGAAGGCCAGAGCGGTGGGCGAGACATGGAGTTT
GAAACAAGGGAGGCACGGGGTAGATGGAAACGGGGCTGGAGGGGCCGAGC
CAGGAGGGAGAGCGGATGCACCGTCAGGGCATGAAAGCATAAGCAGCAGA
AGATGAAGCAGGAGGGAGCGGCTGGAGGGAGGGCTACGACGCAAGCCACC
ATATATGAAGCAGACGGAGGACATTGATCAAAGATGCTGCCACAGAAGTG
TGGGAGCTCTCTAAACGACACGAGGGCGGTGAGAAGAGCGGAAGTGGAGG
AAAAAGGGAGGGAGGGGCGTACGGTCCCTGTGACTTCCCATGGGGCCCTT
CACTTTTCCCGCTTGCCCGCATTTTTTGTCATGATGCACTGGACTGAGCG
GTCGAAGGAGCAAGGTATGAAAAGTATGAGCTGTGCAGCCATTGGGGGAG
AGGGAAAATTTGTGATGCATTTGCGGGCAGCGGGGGAGCTTGGAGGGAGT
ATGATGTACTTATCCTCGCGCGCGACTGCGATGTCGTGAGGGCGAGTTGT
GGAAGGTCGGGCAGATGGGGTAAGGGACCTGGTTTTTGCACGGAGCGTGT
ACCGGTATAGTCCTCCCACTCCTCCTCGGTGAAGGCCAGAATGGTCGAGA
GAGGGTTTTTGGTGTGTGGGGTGGGGCGGGCGCCAAAGATGGGGAGGCGG
GGGAGGTATGGGGTGGAGCCCGGGGGGTGGCCTGAGGATAAGCGGGTCGG
ACGAGAGAAGGAGCCTGGAGACCCTGACG

protein sequence of rna216

>rna216-protein ID=rna216-protein|Name=rna216|organism=Nannochloropsis gaditana|type=polypeptide|length=374bp
MFLGHATGEEDGVGAVCYPQRPGELECQYYMKTGTCKYATKCKFHHPPDV
TPTWGTVAPATDVTIGLNKESYPRRPGEQQCTFFLKTGTCKYKMSCKFDH
PPEAIQQTLQLQATPYPMRPGELQCSYYLKTGKCKFGATCRFDHPAMAPE
HATALAAGQYAGAGGAGGMNGHVGGAAGMHAMLAMGRVGMGYYEGTAGGG
MLDMMGLPGQQMLANFGAGAPLAQLPQRPGEKECTFFLRTGRCQYGPRCK
FHHPLDKLQGALMGLNGVHGGPHLSHPHVTGLHAPGFGHPGLEGLYSPYA
LPASGPAGLSHAGHLAMRAGAGGLGSSGAGGEGKGRCPCALVRSRVPFIC
GPGNARTAPPVGSTTPVWAEWRGN

mRNA from alignment at CM002455.1:545813..547771-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna216 ID=rna216|Name=rna216|organism=Nannochloropsis gaditana|type=mRNA|length=1959bp|location=Sequence derived from alignment at CM002455.1:545813..547771- (Nannochloropsis gaditana)
CTACAGGCCTACGCCTGTGAGGGATATGGTGGAGATAACAATGGAGTTAC
CTGGCCAAGACTATCCTCTTTACCACGGGGGCGAGGAGGCGGGTAAGTAC
CGTCATATGAGGGGCGTGCCGGTAGTGCGCGTTCCCTCCTGTCAGACCCG
AGGCGACTTAGCCACCACGAAAGACATTGAGCACTGATAACATGTTTTTG
GGTCATGCGACAGGCGAGGAAGACGGCGTCGGAGCTGTGTGCTACCCACA
GCGGCCGGGGGAATTGGAGTGCCAGTACTATATGAAGACTGGAACCTGCA
AGTAAGTGAAAACTGGAGGGAGGGAGAAAGAAGAGGGTAAGGGAGACCTA
TCGCAGCAAAATATCAAGCCGTTACACTTGCACTCAAAGCATGAAATTCA
GCCAAAGTGAGAGATAATGAGAGGAGAGTACTTAGCACTGGCCTAGGACC
TGCGCCATCACTTACTAGCGATCATCCCCCTTTCAGGTATGCCACGAAAT
GCAAGTTCCATCATCCTCCTGATGTGACTCCAACCTGGGGAACCGTAGCG
CCCGCGACAGACGTGACGATCGGGCTGAACAAGGAGGTGAGCGGAGGGAA
GAGGGGCAGGCTGAGAAGACCGGGCCTGGGAGGGCGCTTCTGGGGGAATG
GGAGGGGGTGGGGCCAGAAGCAGGAATGGAGGCGTGGCTCTGCAAAAGTG
GGCCTTCCTTTAGGACATAGGTTTAGCAGGAAGGGTCGGAAAGCGAGGGA
TTCTAATGGCATGCCTTCCGGGGATCCATTGACTCACGCCTCCCTGCGGG
CTCATCGCTTTCATCAGTCATACCCTCGGCGGCCAGGGGAGCAGCAATGC
ACATTCTTTTTGAAGACGGGCACGTGCAAGTACAAGATGTCGTGCAAGTA
AGAAGGGGAGGAAAGGGTGGCCAGTTAGAAGAGCCCAGTCGCCGCAACGT
CTTGGAAATAGAATGTCTGGCTCGAGCAGCGAACGCGACGCATGCGTGGC
GCGGAGCAGCGATTCGTTCTAGCAGGGCTCTTGACCCCGCCATCCTCACC
TTCCTCTTTTCCTGACTGTTACTACCCAGATTCGACCATCCCCCGGAGGC
AATCCAACAGACCCTCCAGCTCCAGGCCACGCCCTACCCCATGCGCCCCG
GGGAGTTACAGTGCTCCTACTACCTCAAGACGGGGAAGTGCAAATTTGGA
GCGACTTGTCGCTTCGACCACCCCGCGATGGCCCCCGAGCACGCGACGGC
CCTGGCGGCAGGACAGTACGCAGGTGCTGGGGGAGCGGGGGGGATGAACG
GGCACGTTGGAGGGGCCGCGGGCATGCACGCCATGCTGGCGATGGGGAGG
GTGGGGATGGGCTACTACGAGGGCACGGCGGGCGGAGGCATGCTGGACAT
GATGGGACTACCAGGACAGCAGATGCTCGCCAATTTTGGCGCGGGTGCCC
CACTCGCCCAGCTCCCTCAGCGGCCCGGGGAGAAGGAGTGCACTTTCTTC
CTCCGCACAGGTCGGTGTCAATATGGGCCCCGGTGCAAATTCCACCACCC
GCTGGACAAGCTACAGGGGGCGCTCATGGGTCTGAACGGGGTTCATGGAG
GGCCCCACCTGTCCCACCCCCATGTGACCGGCCTGCACGCCCCGGGCTTC
GGGCATCCGGGACTGGAAGGTCTTTACAGCCCCTACGCCCTCCCGGCCTC
GGGTCCGGCGGGCCTCTCCCACGCCGGGCACTTGGCCATGCGCGCTGGCG
CCGGTGGTCTCGGGTCAAGCGGGGCGGGGGGGGAGGGGAAGGGTCGCTGC
CCCTGCGCCCTGGTCAGGAGCCGTGTTCCTTTTATTTGCGGACCGGGAAA
TGCTCGTACGGCCCCACCTGTCGGTTCGACCACCCCCGTGTGGGCGGAGT
GGCGCGGGAATTGAGCAGTGGGGCGGGGAGTCGGGAGGGAGGAAGGGAGG
GAGGGAAGG

Coding sequence (CDS) from alignment at CM002455.1:545813..547771-

>rna216 ID=rna216|Name=rna216|organism=Nannochloropsis gaditana|type=CDS|length=4500bp|location=Sequence derived from alignment at CM002455.1:545813..547771- (Nannochloropsis gaditana)
ATTCGACCATCCCCCGGAGGCAATCCAACAGACCCTCCAGCTCCAGGCCA
CGCCCTACCCCATGCGCCCCGGGGAGTTACAGTGCTCCTACTACCTCAAG
ACGGGGAAGTGCAAATTTGGAGCGACTTGTCGCTTCGACCACCCCGCGAT
GGCCCCCGAGCACGCGACGGCCCTGGCGGCAGGACAGTACGCAGGTGCTG
GGGGAGCGGGGGGGATGAACGGGCACGTTGGAGGGGCCGCGGGCATGCAC
GCCATGCTGGCGATGGGGAGGGTGGGGATGGGCTACTACGAGGGCACGGC
GGGCGGAGGCATGCTGGACATGATGGGACTACCAGGACAGCAGATGCTCG
CCAATTTTGGCGCGGGTGCCCCACTCGCCCAGCTCCCTCAGCGGCCCGGG
GAGAAGGAGTGCACTTTCTTCCTCCGCACAGGTCGGTGTCAATATGGGCC
CCGGTGCAAATTCCACCACCCGCTGGACAAGCTACAGGGGGCGCTCATGG
GTCTGAACGGGGTTCATGGAGGGCCCCACCTGTCCCACCCCCATGTGACC
GGCCTGCACGCCCCGGGCTTCGGGCATCCGGGACTGGAAGGTCTTTACAG
CCCCTACGCCCTCCCGGCCTCGGGTCCGGCGGGCCTCTCCCACGCCGGGC
ACTTGGCCATGCGCGCTGGCGCCGGTGGTCTCGGGTCAAGCGGGGCGGGG
GGGGAGGGGAAGGGTCGCTGCCCCTGCGCCCTGGTCAGGAGCCGTGTTCC
TTTTATTTGCGGACCGGGAAATGCTCGTACGGCCCCACCTGTCGGTTCGA
CCACCCCCGTGTGGGCGGAGTGGCGCGGGAATTGATCATACCCTCGGCGG
CCAGGGGAGCAGCAATGCACATTCTTTTTGAAGACGGGCACGTGCAAGTA
CAAGATGTCGTGCAAGTATGCCACGAAATGCAAGTTCCATCATCCTCCTG
ATGTGACTCCAACCTGGGGAACCGTAGCGCCCGCGACAGACGTGACGATC
GGGCTGAACAAGGAGATGTTTTTGGGTCATGCGACAGGCGAGGAAGACGG
CGTCGGAGCTGTGTGCTACCCACAGCGGCCGGGGGAATTGGAGTGCCAGT
ACTATATGAAGACTGGAACCTGCAAATTCGACCATCCCCCGGAGGCAATC
CAACAGACCCTCCAGCTCCAGGCCACGCCCTACCCCATGCGCCCCGGGGA
GTTACAGTGCTCCTACTACCTCAAGACGGGGAAGTGCAAATTTGGAGCGA
CTTGTCGCTTCGACCACCCCGCGATGGCCCCCGAGCACGCGACGGCCCTG
GCGGCAGGACAGTACGCAGGTGCTGGGGGAGCGGGGGGGATGAACGGGCA
CGTTGGAGGGGCCGCGGGCATGCACGCCATGCTGGCGATGGGGAGGGTGG
GGATGGGCTACTACGAGGGCACGGCGGGCGGAGGCATGCTGGACATGATG
GGACTACCAGGACAGCAGATGCTCGCCAATTTTGGCGCGGGTGCCCCACT
CGCCCAGCTCCCTCAGCGGCCCGGGGAGAAGGAGTGCACTTTCTTCCTCC
GCACAGGTCGGTGTCAATATGGGCCCCGGTGCAAATTCCACCACCCGCTG
GACAAGCTACAGGGGGCGCTCATGGGTCTGAACGGGGTTCATGGAGGGCC
CCACCTGTCCCACCCCCATGTGACCGGCCTGCACGCCCCGGGCTTCGGGC
ATCCGGGACTGGAAGGTCTTTACAGCCCCTACGCCCTCCCGGCCTCGGGT
CCGGCGGGCCTCTCCCACGCCGGGCACTTGGCCATGCGCGCTGGCGCCGG
TGGTCTCGGGTCAAGCGGGGCGGGGGGGGAGGGGAAGGGTCGCTGCCCCT
GCGCCCTGGTCAGGAGCCGTGTTCCTTTTATTTGCGGACCGGGAAATGCT
CGTACGGCCCCACCTGTCGGTTCGACCACCCCCGTGTGGGCGGAGTGGCG
CGGGAATTGATCATACCCTCGGCGGCCAGGGGAGCAGCAATGCACATTCT
TTTTGAAGACGGGCACGTGCAAGTACAAGATGTCGTGCAAGTATGCCACG
AAATGCAAGTTCCATCATCCTCCTGATGTGACTCCAACCTGGGGAACCGT
AGCGCCCGCGACAGACGTGACGATCGGGCTGAACAAGGAGATGTTTTTGG
GTCATGCGACAGGCGAGGAAGACGGCGTCGGAGCTGTGTGCTACCCACAG
CGGCCGGGGGAATTGGAGTGCCAGTACTATATGAAGACTGGAACCTGCAA
ATTCGACCATCCCCCGGAGGCAATCCAACAGACCCTCCAGCTCCAGGCCA
CGCCCTACCCCATGCGCCCCGGGGAGTTACAGTGCTCCTACTACCTCAAG
ACGGGGAAGTGCAAATTTGGAGCGACTTGTCGCTTCGACCACCCCGCGAT
GGCCCCCGAGCACGCGACGGCCCTGGCGGCAGGACAGTACGCAGGTGCTG
GGGGAGCGGGGGGGATGAACGGGCACGTTGGAGGGGCCGCGGGCATGCAC
GCCATGCTGGCGATGGGGAGGGTGGGGATGGGCTACTACGAGGGCACGGC
GGGCGGAGGCATGCTGGACATGATGGGACTACCAGGACAGCAGATGCTCG
CCAATTTTGGCGCGGGTGCCCCACTCGCCCAGCTCCCTCAGCGGCCCGGG
GAGAAGGAGTGCACTTTCTTCCTCCGCACAGGTCGGTGTCAATATGGGCC
CCGGTGCAAATTCCACCACCCGCTGGACAAGCTACAGGGGGCGCTCATGG
GTCTGAACGGGGTTCATGGAGGGCCCCACCTGTCCCACCCCCATGTGACC
GGCCTGCACGCCCCGGGCTTCGGGCATCCGGGACTGGAAGGTCTTTACAG
CCCCTACGCCCTCCCGGCCTCGGGTCCGGCGGGCCTCTCCCACGCCGGGC
ACTTGGCCATGCGCGCTGGCGCCGGTGGTCTCGGGTCAAGCGGGGCGGGG
GGGGAGGGGAAGGGTCGCTGCCCCTGCGCCCTGGTCAGGAGCCGTGTTCC
TTTTATTTGCGGACCGGGAAATGCTCGTACGGCCCCACCTGTCGGTTCGA
CCACCCCCGTGTGGGCGGAGTGGCGCGGGAATTGATCATACCCTCGGCGG
CCAGGGGAGCAGCAATGCACATTCTTTTTGAAGACGGGCACGTGCAAGTA
CAAGATGTCGTGCAAGTATGCCACGAAATGCAAGTTCCATCATCCTCCTG
ATGTGACTCCAACCTGGGGAACCGTAGCGCCCGCGACAGACGTGACGATC
GGGCTGAACAAGGAGATGTTTTTGGGTCATGCGACAGGCGAGGAAGACGG
CGTCGGAGCTGTGTGCTACCCACAGCGGCCGGGGGAATTGGAGTGCCAGT
ACTATATGAAGACTGGAACCTGCAAATTCGACCATCCCCCGGAGGCAATC
CAACAGACCCTCCAGCTCCAGGCCACGCCCTACCCCATGCGCCCCGGGGA
GTTACAGTGCTCCTACTACCTCAAGACGGGGAAGTGCAAATTTGGAGCGA
CTTGTCGCTTCGACCACCCCGCGATGGCCCCCGAGCACGCGACGGCCCTG
GCGGCAGGACAGTACGCAGGTGCTGGGGGAGCGGGGGGGATGAACGGGCA
CGTTGGAGGGGCCGCGGGCATGCACGCCATGCTGGCGATGGGGAGGGTGG
GGATGGGCTACTACGAGGGCACGGCGGGCGGAGGCATGCTGGACATGATG
GGACTACCAGGACAGCAGATGCTCGCCAATTTTGGCGCGGGTGCCCCACT
CGCCCAGCTCCCTCAGCGGCCCGGGGAGAAGGAGTGCACTTTCTTCCTCC
GCACAGGTCGGTGTCAATATGGGCCCCGGTGCAAATTCCACCACCCGCTG
GACAAGCTACAGGGGGCGCTCATGGGTCTGAACGGGGTTCATGGAGGGCC
CCACCTGTCCCACCCCCATGTGACCGGCCTGCACGCCCCGGGCTTCGGGC
ATCCGGGACTGGAAGGTCTTTACAGCCCCTACGCCCTCCCGGCCTCGGGT
CCGGCGGGCCTCTCCCACGCCGGGCACTTGGCCATGCGCGCTGGCGCCGG
TGGTCTCGGGTCAAGCGGGGCGGGGGGGGAGGGGAAGGGTCGCTGCCCCT
GCGCCCTGGTCAGGAGCCGTGTTCCTTTTATTTGCGGACCGGGAAATGCT
CGTACGGCCCCACCTGTCGGTTCGACCACCCCCGTGTGGGCGGAGTGGCG
CGGGAATTGATCATACCCTCGGCGGCCAGGGGAGCAGCAATGCACATTCT
TTTTGAAGACGGGCACGTGCAAGTACAAGATGTCGTGCAAGTATGCCACG
AAATGCAAGTTCCATCATCCTCCTGATGTGACTCCAACCTGGGGAACCGT
AGCGCCCGCGACAGACGTGACGATCGGGCTGAACAAGGAGATGTTTTTGG
GTCATGCGACAGGCGAGGAAGACGGCGTCGGAGCTGTGTGCTACCCACAG
CGGCCGGGGGAATTGGAGTGCCAGTACTATATGAAGACTGGAACCTGCAA

Synonyms

Publications