rna2151, rna2151 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2151
Unique Name	rna2151
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2380
Alignment location	CM002458.1:1004275..1005655 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100009g8.613.mrna
Orig protein id	gnl\|cribi\|Naga_100009g8.613
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1004275..1005655 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g8	gene2054	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2151	rna2151-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28570.1	cds2143	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1004275..1005655-
coding sequence from alignment at CM002458.1:1004275..1005655-

mRNA sequence

>rna2151 ID=rna2151|Name=rna2151|organism=Nannochloropsis gaditana|type=mRNA|length=2380bp
TACCCTAGTCTGTGCGAAATACTGATTTGCTTACGCGTCATGAACAGGCC
TGAAATCAACCGAAATCGAGATACTGTTTTATACAACGCGTACAACGCGT
CAGGCTATTCCTGTGACAAAGGGTAGCCTCCCTCTGACAACGTTTGTTTT
GGGGAAAGTCGCGCCCATCGTCATCAACTGTACGCCCCCAGGAACGGGGC
AGGAACAAATTTTAGACCATGGCGGCCCCCAGTATAGCATCATCGCTCCA
TAAAGAGCCTGAGCTCCTGCGACAAGAAGCAACACGCGTGCAGCAGACGC
TTGAGGCACTATATCGCAGCCATTACACGACAATTATTGAGAATTACGAA
TGTATGACCTTTATTCAGGAACGAGGAACGGAATTTCAAGCGGACTTGAC
TGCTCTGCAGGAGGAAGTAGGAGGTCTGAAAGAGGCGTGTGGCCCATTTA
CTGCAGGCGCACAAGCCATCGTTGGGGATTTGAAAAGAAATCGACAGACT
TTCCAGCATCACTTGCAGCTGGTGGAGCTGCTCGAAGTCCCGCAAGTCAT
GGACGCCTGTCTTCGAAATGGGCTGTATGACGAGGCGGTGGAAGTCGTCG
CATTCGCTAACACACTAGAGCGTCGGCACTTGCGATCTCTGGAGCAGGCC
GACCCCTACTCCAACAGTAAAAGCAGAAGCATGTTCGACGAGGGGGGACG
AGGTAAGCACACCGTCGTCATCGCGGGCCTGGTGCAGGAACTGCGCGTCC
TTCAAAGACAGTTGAGGGAAAGGCTTGTCTATCAGCTTCGGCTGCCTATC
CAGCTACCACGGTGTCTGCAGATCATCTCCTGTCTGCGGAAACTGGACGG
CCTGGCTCTTGACGCCCGTTCCCAGGGGCCGCGGAAAAGGCAGCTCTCCC
TCTCTGCTGCTCCGGCGACGGTCAATCGCGGTCGGATCGGGGCCGCACAC
GATGTAAGCGGGCATGATGAGTTGGAGAAAGAGTTGCAGACCGAGTTTCT
GGACGCCCGGGATGCCTGGCTCCAGTCTGAGTTGGAGCAGGGCAGGAGCG
GCGCGTCCGGCGCCCGCGGGCACGGGGTCGGGGTCGCGGATCTGATGGCC
ATGATCGAGGCGAACAGGACGCATTGGTTTGAGATCACCACCCAGTTCCG
CGCCATCTTCTTGGACGACGGGTTGGAGGCTTCCGGCTCGTCCTCGTCCA
CGCACTCGTCCTCCACCTCCCTCCTTCGCGGGCAGGACGGTGCCGGGGGG
AGCAAGGTCCTCTCCGCCTGGTTGCTCCGGCGTCTGGCCCTCTTCCTCGG
CGAGTTGGAGGATAAGCTGGCGCACGTGACGGAAGGGGCCGTGCTCGCGG
ACGTGATGGAGCAATGCCTGTTCTTCGCCGCCAGTATGGGCCGAATCGGA
GGAGATTTCCGGGCCTCACTGGGTCCCGTTTTCTCGCAGGCTATCCTGGC
CATGGCCGACGCGCACTGGAGCGCGTCGAGGGTGGAATTGGAGGCGCTGT
TGGAGCGTTGTGCGCGGGAAGGCACCATGCTTCGGGCACAACCTCGCCCA
CACAGGCAGTCCGGCAGCGGGTCGCACCCCTACCCCATGTGCTATTACGC
CCCAGGAAGCACCGGACCCAACCAACACGATGGCAGGGACACGGCCCATC
ACAGTGCCCAGCCGGATCCTGACACGAGCACCTCCGAAAGCGACTTTCCC
GCGCCTCCTTCCTCCATCCTTGCCTTCCCCCCCCTCGCCCAGTTCACGAA
CCTGGTGTTGGTTTCCTATAACCAGCTTCGGCAATGCACGCCCTGGTCCC
TGGTCGATGACTTGCAAGCCTTGCTCGTGACCCGACTGCGCGAGGTCGCG
GGTCTTCTGGTGAAGCACGAGGAACAGTTGCAGCAATTGATTCGGGAGCA
CGACGAAGAGGCGCAGGCCCCTCTTTCAGCCGTGACTGGTCAATACCGAG
ACCTCAGGAGGGAGGCACGCGACGTGGTGTTCCCCTACGTGATCAGGTGC
TTCGGGCGTATGGTGACAGGGGGAGGGGGAGGAGGAGTGGGCAAGATGAC
ACGAGAAGGGCGCCAAATAGAGGAGCTGGACACAGAGATGCGGAAGGTCT
GGAGCGCGCAGTCCCCAGAACCCTGCTGAGCACGCGGACCGCGGCCATAG
GCCCGAGTCACGATGCCAGTAGGCTTCAAGACCACCTTGACGCGATTGCG
TGTGGACACGTTGGATTGAACGCATTGGATGGAAAGGTGGTCGAGGAGGT
GAAAATCTTTGTCGGACAAGATGTCTCATCGATTGAGCAATGGTCAAATC
CGTTCACCGCAAAAGTAAAATTCCTGCACCATGTAGCTTTGCTTGTTCAG
TTTTTACCGGCGCTCTTCCGCAACTTAAGC

protein sequence of rna2151

>rna2151-protein ID=rna2151-protein|Name=rna2151|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MPAALYYGDTQGWQMWRECALLIPMLSTALLVVAVFSRDWSRLTTHTTLW
SEVLIDDFWGLWQWSSVMTSASSTVRLSFDYNWCNRDDTTDQCHLLVLAR
ALAVATVALEVAAVLGMLIVECRTAYRAGFSAEYACMALTTSHLICAILM
LVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSAVSTVMTNFCVIKEL
AHKSAYRSISPPGKTDLRSRNVR

mRNA from alignment at CM002458.1:1004275..1005655-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2151 ID=rna2151|Name=rna2151|organism=Nannochloropsis gaditana|type=mRNA|length=1381bp|location=Sequence derived from alignment at CM002458.1:1004275..1005655- (Nannochloropsis gaditana)
CTGAAATCTTGCGTCGTTCGTCTCGCGCTAGTATCCTCCTCTTTTCTTGC
CATTACTACTGCCTCGACAATGTTGCATGCGGATTGCGATCTGTGTTGTT
TGGACTCAGTTTTTGATGAATTGCTCAAGACGGGGCTATCGCGGTATTGC
CTTTCCTTAAGCACGCATATCGCTCTTCGCTTGGTCTCGGTTGTTTATCC
GTTCCTTTAACCTCGACACGGCAAGACCGTACGAAGCTATGCTTACTTAT
TCATAACGACCAAACCAGATGCCCGCTGCTTTGTACTACGGCGACACTCA
AGGGTGGCAAATGTGGAGGGAGTGCGGTGAGTGTGTTAAATGCGCTTTTC
GGTAGACTGTCCAACCTGGATGGAAAACGAATGTCCATATCCCTCGACTC
TTTACGTATCTTCATTGACATCCTGGCCCGCAACATGTTACCTAGCGCTT
TTGATTCCCATGTTGAGCACGGCTTTGCTGGTTGTAGCTGTATTTTCTCG
GGATTGGAGCCGACTGACCACCCACACTACACTCTGGTACGTGCGTCGGG
TAAACACTGCCATGTCATAAACCCTCCTGCCGCCCCACTTTCACATGTAC
TACATTTGGTCTGAGTATTTCTCCACTAATGCACTCGACTGCTTTGACAT
ACTGCAGGAGTGAGGTTCTCATCGATGACTTCTGGGGCCTGTGGCAGTGG
AGCTCGGTCATGACTTCGGCCTCGTCGACTGTTCGCCTTTCTTTTGATTA
CAACTGGTGCAATCGCGACGACACGACGGACCAGTGCCACCTCCTTGTCC
TTGCTCGGGCATTGGCGGTGGCTACTGTCGCCTTGGAGGTCGCCGCCGTC
CTGGGCATGCTGATCGTGGAATGTCGCACAGCCTACCGAGCAGGTTTCTC
GGCCGAGTACGCATGCATGGCGCTCACTACTTCCCACCTCATCTGCGCCA
TCCTGATGCTGGTCGTTTGGTCTTCTGTGCAAGACGAGCTGCGCGCACAG
GACTTGACCTCGGGCAGGAGTAAAATCCATTTTGGCTTCTCGTGGTGGTT
CTTTCTGGTGTCGGCGGTCTCCACGGTCATGACGAACTTTTGCGTGATCA
AAGAGCTGGCACACAAGTCTGCTTATCGTTCAATAAGTCCCCCGGGAAAG
ACGGACTTGCGAAGTCGAAATGTGCGATGATGTTGTGGAGGAGCTGGGTC
AAGAGAGGAAAGAGGAGTCAAGTCTATGTTGAGCGAGAGAGGGGACGCCG
ACGCCTATGTAATAAATGTATGAAAGGCAGTTTACACGAAAAGGAGAAAG
ATTAAACCCTTAGGCCTGCTTAAGTTGCGGAAGAGCGCCGGTAAAAACTG
AACAAGCAAAGCTACATGGTGCAGGAATTTT

Coding sequence (CDS) from alignment at CM002458.1:1004275..1005655-

>rna2151 ID=rna2151|Name=rna2151|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002458.1:1004275..1005655- (Nannochloropsis gaditana)
GAGTGAGGTTCTCATCGATGACTTCTGGGGCCTGTGGCAGTGGAGCTCGG
TCATGACTTCGGCCTCGTCGACTGTTCGCCTTTCTTTTGATTACAACTGG
TGCAATCGCGACGACACGACGGACCAGTGCCACCTCCTTGTCCTTGCTCG
GGCATTGGCGGTGGCTACTGTCGCCTTGGAGGTCGCCGCCGTCCTGGGCA
TGCTGATCGTGGAATGTCGCACAGCCTACCGAGCAGGTTTCTCGGCCGAG
TACGCATGCATGGCGCTCACTACTTCCCACCTCATCTGCGCCATCCTGAT
GCTGGTCGTTTGGTCTTCTGTGCAAGACGAGCTGCGCGCACAGGACTTGA
CCTCGGGCAGGAGTAAAATCCATTTTGGCTTCTCGTGGTGGTTCTTTCTG
GTGTCGGCGGTCTCCACGGTCATGACGAACTTTTGCGTGATCAAAGAGCT
GGCACACAAGTCTGCTTATCGTTCAATAAGTCCCCCGGGAAAGACGGACT
TGCGAAGTCGAAATGTGCGATGACGCTTTTGATTCCCATGTTGAGCACGG
CTTTGCTGGTTGTAGCTGTATTTTCTCGGGATTGGAGCCGACTGACCACC
CACACTACACTCTGATGCCCGCTGCTTTGTACTACGGCGACACTCAAGGG
TGGCAAATGTGGAGGGAGTGCGGAGTGAGGTTCTCATCGATGACTTCTGG
GGCCTGTGGCAGTGGAGCTCGGTCATGACTTCGGCCTCGTCGACTGTTCG
CCTTTCTTTTGATTACAACTGGTGCAATCGCGACGACACGACGGACCAGT
GCCACCTCCTTGTCCTTGCTCGGGCATTGGCGGTGGCTACTGTCGCCTTG
GAGGTCGCCGCCGTCCTGGGCATGCTGATCGTGGAATGTCGCACAGCCTA
CCGAGCAGGTTTCTCGGCCGAGTACGCATGCATGGCGCTCACTACTTCCC
ACCTCATCTGCGCCATCCTGATGCTGGTCGTTTGGTCTTCTGTGCAAGAC
GAGCTGCGCGCACAGGACTTGACCTCGGGCAGGAGTAAAATCCATTTTGG
CTTCTCGTGGTGGTTCTTTCTGGTGTCGGCGGTCTCCACGGTCATGACGA
ACTTTTGCGTGATCAAAGAGCTGGCACACAAGTCTGCTTATCGTTCAATA
AGTCCCCCGGGAAAGACGGACTTGCGAAGTCGAAATGTGCGATGACGCTT
TTGATTCCCATGTTGAGCACGGCTTTGCTGGTTGTAGCTGTATTTTCTCG
GGATTGGAGCCGACTGACCACCCACACTACACTCTGATGCCCGCTGCTTT
GTACTACGGCGACACTCAAGGGTGGCAAATGTGGAGGGAGTGCGGAGTGA
GGTTCTCATCGATGACTTCTGGGGCCTGTGGCAGTGGAGCTCGGTCATGA
CTTCGGCCTCGTCGACTGTTCGCCTTTCTTTTGATTACAACTGGTGCAAT
CGCGACGACACGACGGACCAGTGCCACCTCCTTGTCCTTGCTCGGGCATT
GGCGGTGGCTACTGTCGCCTTGGAGGTCGCCGCCGTCCTGGGCATGCTGA
TCGTGGAATGTCGCACAGCCTACCGAGCAGGTTTCTCGGCCGAGTACGCA
TGCATGGCGCTCACTACTTCCCACCTCATCTGCGCCATCCTGATGCTGGT
CGTTTGGTCTTCTGTGCAAGACGAGCTGCGCGCACAGGACTTGACCTCGG
GCAGGAGTAAAATCCATTTTGGCTTCTCGTGGTGGTTCTTTCTGGTGTCG
GCGGTCTCCACGGTCATGACGAACTTTTGCGTGATCAAAGAGCTGGCACA
CAAGTCTGCTTATCGTTCAATAAGTCCCCCGGGAAAGACGGACTTGCGAA
GTCGAAATGTGCGATGACGCTTTTGATTCCCATGTTGAGCACGGCTTTGC
TGGTTGTAGCTGTATTTTCTCGGGATTGGAGCCGACTGACCACCCACACT
ACACTCTGATGCCCGCTGCTTTGTACTACGGCGACACTCAAGGGTGGCAA
ATGTGGAGGGAGTGCG

Synonyms

Publications