rna2150, rna2150 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2150
Unique Name	rna2150
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2487
Alignment location	CM002458.1:1001959..1004338 +

Link to JBrowse

Properties


Property Name	Value
Product	Dor1-like protein
Orig transcript id	gnl\|cribi\|Naga_100009g9.593.mrna
Orig protein id	gnl\|cribi\|Naga_100009g9.593
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1001959..1004338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g9	gene2053	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2150	rna2150-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28550.1	cds2142	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1001959..1004338+
coding sequence from alignment at CM002458.1:1001959..1004338+

mRNA sequence

>rna2150 ID=rna2150|Name=rna2150|organism=Nannochloropsis gaditana|type=mRNA|length=2487bp
ATGAGTGTTCCGACCCCGGGAAGCCTTGGAACCGCCGGGATCCATTCTCA
TTTCCCCCCGTCCCGGCCTCCCTCCGAGCAAATTGGCATTGATGTGAGTC
TACGCGAGCGGCCTGCTGCCTGCGTATGCGACGTCAACGTGCAGCAGCAT
TTGGAGCGCGGTGCGATAGTGCACCAAGTGCACATGGAACACGCATCGCT
TCCGGAGTCACTAGCAAGCCAGCAGCGATCGCTTCACCGGCAACAACAAC
ATCAGCAACACCAACAGTCCCAGCAAGAGCCGCAGCGACGACGACAGAAT
GTCTCCGAGATGGTACCCCTCACCAGCAACACTCCTGCCTACTGCTCCTC
CTCCTGCTCCTCCTCCGCCTCCTCCTTGTCACTGGACGACCTCGACCAGG
GTCCAAACTGCGGTGCCAGCCTGGAAGCGGAGGCCCATGCCCCCAGGTCT
CCCATACTCCCCGTGCGCGTGGATTTGGTCAACGTAGGCTACTCGACGGC
GCAGGCGCGTCCCAGACAAGCCCCCATCCTTCGAGACGTGAACGCCTGCT
TCCAGCCCGGACACTTGGTGGCGGTCATGGGCCCCTCGGGGAGCGGCAAG
TCTACCCTCCTCCGCCTCGTCCAGGGCGATCACCGGTATTTGCGGAGGCT
TCAGGGGCAGGTGCTGGCGAACGGGACGCCGGTCAAGGCGATTCATCGGG
CCTGGCGGTATCTGTGTTCCCTCGTGCCCCAGGAGGACGTCTTGCTCGGG
AGTTTCACCGTCCGCGAGACGATGCGTTTCTCCACCCAGCTCCGCCTCCC
GCACGACCGGCCCGCGGAGGAGAAGGAGGAAGTGGTGAGGGACGTTTTGG
AGGATCTGGGGATCATGGAGTGTCAGGATGTCCTGGTGAAGGACATCTCG
GGCGGGCAGCGGCGCCGGGTCTCGGTAGGCTTGGAGCTTTTGGTGAACCC
GAGTGTCCTCCTCCTGGATGAACCAACCAGCGGCTTGGACAGCAAGACTG
CGGAGGACATTTGTGCGTTGCTGAAGGCCCTCGCAAAGCCCGGCCGGGTC
GTCATGTGTTCCATTCACCAGCCCTCTTTCAAGATTTTCAGCTCTTTCTC
AAAACTTTGCTTTCTAGTCAAAGGTAGTCTGGCTTACGCAGGGTCCGTTC
CCAACGTGATGCCCTACTTCGCGGCCAGGGGTTTCCGCGTGCCCACGTAC
GACTCGCCGGCAGACTATTACATGCGGGTCATGCAGACGGAGGGGCCGGC
CCTGATCGAGGCCTGGGCCGACGCCGCGCCTCTGAGGGAGCCTCCGTCCC
CTCCGCACGTCGCGGACGCGGCCGATACGGCTCCGGCCTCAGCGGGGAGC
GACTGTATTCCCTCCATTCGGACGGCTATTCCCACCCCATTTGCGGCGCT
TGCCACCGATGGTGGGGAGGCAGGCGCCTCAGTCAAGGATCCTCCCTCCC
TTGTCGCATGGGACCCTACAGGCTCTTGGCTCCGGTCCGCCGATGCCCAA
GACGGGCGGCGGGCGGCCCATGTCTCGAATTGGCAGCAATATCGGGTGCT
GCTTCGTCGTTTCTGGGAGGACAGCTACAAGGACAAGGGGAAGATGATGA
GCGGGGTGGCGATGGAGGGCAGCATCGGACTCTTGGTCGGCTTGGTCTGG
TTCCAGCAAGATATCCACGAGAAGGGGTCCGTCTTTCCGATCATGGGGGT
ATTTATCATGCTCACCACCATCGCCATCTTCGACAATTGCGTCTCGGTCG
GTCTGAAATTCCCGCTAACCCGGGCTTTGCACTTCCGAGAATTTTCCAAC
GGGTACTACCGCCTCCTGCCCTACTACCTGGCCACCGTCACCTCTTCCCT
TGTCCTCGCATCCATATATCAGCTTCTCCAGGCGCTTCTTGTCTTCTTCT
TGGTGGGCCTCCATTTTACCGTGGGAAAGTTTCTCGTCTACCTGTTCGTA
CTCGCCCTCGCCGCCAGCATGGGAGCTTTCCTTGGCTTCATCGTCGGGAC
ATACACGAGTGACCTCAAGCGGACACAGGAGGTTCTCACCCCGCTTCTCA
TGCCCATGATTATTTTCTCCGGCTACATGCTACCCTTACCGCAGATTCCT
ACCTATCTGCGTTTCATGTACTACTCCTCTTTCTACCAGTACGTGTTCTC
CTCCCTGGCCATCAATCATTTTTCGGGGCTCGAGTTCACCGACTGCTCGC
CACTTAACTCATTCTGCTTAAGCAAAGGGGACCAATATTTAGCTTTGGTC
GGCTTGGCTCCCTCCATGCTTGCTCGAAACCTGGTCATATGCGTCGGATT
TCTGCTCCTTCTCATCGGCCTAGGATTTATGGGTTTGCGACGCGATCTGG
CATTGGGCCGCGAACGACCGTTTTTCTTCCAGAAAGAGAGACAAGGGCCT
AGCCCACGTCGGTGGCTTTACATGCATATCTCAGTATCTTTTGCGCATCA
ATCGATTGTAGATGACGAGGACAGATTTCGAGAGTGA

protein sequence of rna2150

>rna2150-protein ID=rna2150-protein|Name=rna2150|organism=Nannochloropsis gaditana|type=polypeptide|length=636bp
MAAPSIASSLHKEPELLRQEATRVQQTLEALYRSHYTTIIENYECMTFIQ
ERGTEFQADLTALQEEVGGLKEACGPFTAGAQAIVGDLKRNRQTFQHHLQ
LVELLEVPQVMDACLRNGLYDEAVEVVAFANTLERRHLRSLEQADPYSNS
KSRSMFDEGGRGKHTVVIAGLVQELRVLQRQLRERLVYQLRLPIQLPRCL
QIISCLRKLDGLALDARSQGPRKRQLSLSAAPATVNRGRIGAAHDVSGHD
ELEKELQTEFLDARDAWLQSELEQGRSGASGARGHGVGVADLMAMIEANR
THWFEITTQFRAIFLDDGLEASGSSSSTHSSSTSLLRGQDGAGGSKVLSA
WLLRRLALFLGELEDKLAHVTEGAVLADVMEQCLFFAASMGRIGGDFRAS
LGPVFSQAILAMADAHWSASRVELEALLERCAREGTMLRAQPRPHRQSGS
GSHPYPMCYYAPGSTGPNQHDGRDTAHHSAQPDPDTSTSESDFPAPPSSI
LAFPPLAQFTNLVLVSYNQLRQCTPWSLVDDLQALLVTRLREVAGLLVKH
EEQLQQLIREHDEEAQAPLSAVTGQYRDLRREARDVVFPYVIRCFGRMVT
GGGGGGVGKMTREGRQIEELDTEMRKVWSAQSPEPC

mRNA from alignment at CM002458.1:1001959..1004338+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2150 ID=rna2150|Name=rna2150|organism=Nannochloropsis gaditana|type=mRNA|length=2380bp|location=Sequence derived from alignment at CM002458.1:1001959..1004338+ (Nannochloropsis gaditana)
TACCCTAGTCTGTGCGAAATACTGATTTGCTTACGCGTCATGAACAGGCC
TGAAATCAACCGAAATCGAGATACTGTTTTATACAACGCGTACAACGCGT
CAGGCTATTCCTGTGACAAAGGGTAGCCTCCCTCTGACAACGTTTGTTTT
GGGGAAAGTCGCGCCCATCGTCATCAACTGTACGCCCCCAGGAACGGGGC
AGGAACAAATTTTAGACCATGGCGGCCCCCAGTATAGCATCATCGCTCCA
TAAAGAGCCTGAGCTCCTGCGACAAGAAGCAACACGCGTGCAGCAGACGC
TTGAGGCACTATATCGCAGCCATTACACGACAATTATTGAGAATTACGAA
TGTATGACCTTTATTCAGGAACGAGGAACGGAATTTCAAGCGGACTTGAC
TGCTCtgcaggaggaagtaggaggTCTGAAAGAGGCGTGTGGCCCATTTA
CTGCAGGCGCACAAGCCATCGTTGGGGATTTGAAAAGAAATCGACAGACT
TTCCAGCATCACTTGCAGCTGGTGGAGCTGCTCGAAGTCCCGCAAGTCAT
GGACGCCTGTCTTCGAAATGGGCTGTATgacgaggcggtggaagtCGTCG
CATTCGCTAACACACTAGAGCGTCGGCACTTGCGATCTCTGGAGCAGGCC
GACCCCTACTCCAACAGTAAAAGCAGAAGCATGTTCGACGAGGGGGGACG
AGGTAAGCACACCGTCGTCATCGCGGGCCTGGTGCAGGAACTGCGCGTCC
TTCAAAGACAGTTGAGGGAAAGGCTTGTCTATCAGCTTCGGCTGCCTATC
CAGCTACCACGGTGTCTGCAGATCATCTCCTGTCTGCGGAAACTGGACGG
CCTGGCTCTTGACGCCCGTTCCCAGGGGCCGCGGAAAAGgcagctctccc
tctctgctgCTCCGGCGACGGTCAATCGCGGTCGGATCGGGGCCGCACAC
GATGTAAGCGGGCATGATGAGTTGGAGAAAGAGTTGCAGACCGAGTTTCT
GGACGCCCGGGATGCCTGGCTCCAGTCTGAGTTGGAGCAGGGCAGGAGCG
GCGCGTCCGGCGCCCGCGGGCACGGGGTCGGGGTCGCGGATCTGATGGCC
ATGATCGAGGCGAACAGGACGCATTGGTTTGAGATCACCACCCAGTTCCG
CGCCATCTTCTTGGACGACGGGTTGGAGGCTTCcggctcgtcctcgtcca
cgcactcgtcctccacctccctccttcgcgggCAGGACGGTGCCGGGGGG
AGCAAGGTCCTCTCCGCCTGGTTGCTCCGGCGTctggccctcttcctcgg
cgAGTTGGAGGATAAGCTGGCGCACGTGACGGAAGGGGCCGTGCTCGCGG
ACGTGATGGAGCAATGCCTGTTCTTCGCCGCCAGTATGGGCCGAATCGGA
GGAGATTTCCGGGCCTCACTGGGTCCCGTTTTCTCGCAGGCTATCCTGGC
CATGGCCGACGCGCACTGGAGCGCGTCGAGGGTGGAATTGGAGGCGCTGT
TGGAGCGTTGTGCGCGGGAAGGCACCATGCTTCGGGCACAACCTCGCCCA
CACAGGCAGTCCGGCAGCGGGTCGCACCCCTACCCCATGTGCTATTACGC
CCCAGGAAGCACCGGACCCAACCAACACGATGGCAGGGACACGGCCCATC
ACAGTGCCCAGCCGGATCCTGACACGAGCACCTCCGAAAGCGACTTtccc
gcgcctccttcctccatccttgccttcccccccctcgcccagtTCACGAA
CCTGGTGTTGGTTTCCTATAACCAGCTTCGGCAATGCACGCCCTGGTCCC
TGGTCGATGACTTGCAAGCCTTGCTCGTGACCCGACTGCGCGAGGTCGCG
GGTCTTCTGGTGAAGCACGAGGAACAGTTGCAGCAATTGATTCGGGAGCA
CGACGAAGAGGCGCAGGCCCCTCTTTCAGCCGTGACTGGTCAATACCGAG
AcctcaggagggaggcacgcgACGTGGTGTTCCCCTACGTGATCAGGTGC
TTCGGGCGTATGgtgacagggggagggggaggaggagtgggcaAGATGAC
ACGAGAAGGGCGCCAAATAGAGGAGCTGGACACAGAGATGCGGAAGGTCT
GGAGCGCGCAGTCCCCAGAACCCTGCTGAGCACGCGGACCGCGGCCATAG
GCCCGAGTCACGATGCCAGTAGGCTTCAAGACCACCTTGACGCGATTGCG
TGTGGACACGTTGGATTGAACGCATTGGATGGAAAGGTGGTCGAGGAGGT
GAAAATCTTTGTCGGACAAGATGTCTCATCGATTGAGCAATGGTCAAATC
CGTTCACCGCAAAAGTAAAATTCCTGCACCATGTAGCTTTGCTTGTTCAG
TTTTTACCGGCGCTCTTCCGCAACTTAAGC

Coding sequence (CDS) from alignment at CM002458.1:1001959..1004338+

>rna2150 ID=rna2150|Name=rna2150|organism=Nannochloropsis gaditana|type=CDS|length=1911bp|location=Sequence derived from alignment at CM002458.1:1001959..1004338+ (Nannochloropsis gaditana)
ATGGCGGCCCCCAGTATAGCATCATCGCTCCATAAAGAGCCTGAGCTCCT
GCGACAAGAAGCAACACGCGTGCAGCAGACGCTTGAGGCACTATATCGCA
GCCATTACACGACAATTATTGAGAATTACGAATGTATGACCTTTATTCAG
GAACGAGGAACGGAATTTCAAGCGGACTTGACTGCTCtgcaggaggaagt
aggaggTCTGAAAGAGGCGTGTGGCCCATTTACTGCAGGCGCACAAGCCA
TCGTTGGGGATTTGAAAAGAAATCGACAGACTTTCCAGCATCACTTGCAG
CTGGTGGAGCTGCTCGAAGTCCCGCAAGTCATGGACGCCTGTCTTCGAAA
TGGGCTGTATgacgaggcggtggaagtCGTCGCATTCGCTAACACACTAG
AGCGTCGGCACTTGCGATCTCTGGAGCAGGCCGACCCCTACTCCAACAGT
AAAAGCAGAAGCATGTTCGACGAGGGGGGACGAGGTAAGCACACCGTCGT
CATCGCGGGCCTGGTGCAGGAACTGCGCGTCCTTCAAAGACAGTTGAGGG
AAAGGCTTGTCTATCAGCTTCGGCTGCCTATCCAGCTACCACGGTGTCTG
CAGATCATCTCCTGTCTGCGGAAACTGGACGGCCTGGCTCTTGACGCCCG
TTCCCAGGGGCCGCGGAAAAGgcagctctccctctctgctgCTCCGGCGA
CGGTCAATCGCGGTCGGATCGGGGCCGCACACGATGTAAGCGGGCATGAT
GAGTTGGAGAAAGAGTTGCAGACCGAGTTTCTGGACGCCCGGGATGCCTG
GCTCCAGTCTGAGTTGGAGCAGGGCAGGAGCGGCGCGTCCGGCGCCCGCG
GGCACGGGGTCGGGGTCGCGGATCTGATGGCCATGATCGAGGCGAACAGG
ACGCATTGGTTTGAGATCACCACCCAGTTCCGCGCCATCTTCTTGGACGA
CGGGTTGGAGGCTTCcggctcgtcctcgtccacgcactcgtcctccacct
ccctccttcgcgggCAGGACGGTGCCGGGGGGAGCAAGGTCCTCTCCGCC
TGGTTGCTCCGGCGTctggccctcttcctcggcgAGTTGGAGGATAAGCT
GGCGCACGTGACGGAAGGGGCCGTGCTCGCGGACGTGATGGAGCAATGCC
TGTTCTTCGCCGCCAGTATGGGCCGAATCGGAGGAGATTTCCGGGCCTCA
CTGGGTCCCGTTTTCTCGCAGGCTATCCTGGCCATGGCCGACGCGCACTG
GAGCGCGTCGAGGGTGGAATTGGAGGCGCTGTTGGAGCGTTGTGCGCGGG
AAGGCACCATGCTTCGGGCACAACCTCGCCCACACAGGCAGTCCGGCAGC
GGGTCGCACCCCTACCCCATGTGCTATTACGCCCCAGGAAGCACCGGACC
CAACCAACACGATGGCAGGGACACGGCCCATCACAGTGCCCAGCCGGATC
CTGACACGAGCACCTCCGAAAGCGACTTtcccgcgcctccttcctccatc
cttgccttcccccccctcgcccagtTCACGAACCTGGTGTTGGTTTCCTA
TAACCAGCTTCGGCAATGCACGCCCTGGTCCCTGGTCGATGACTTGCAAG
CCTTGCTCGTGACCCGACTGCGCGAGGTCGCGGGTCTTCTGGTGAAGCAC
GAGGAACAGTTGCAGCAATTGATTCGGGAGCACGACGAAGAGGCGCAGGC
CCCTCTTTCAGCCGTGACTGGTCAATACCGAGAcctcaggagggaggcac
gcgACGTGGTGTTCCCCTACGTGATCAGGTGCTTCGGGCGTATGgtgaca
gggggagggggaggaggagtgggcaAGATGACACGAGAAGGGCGCCAAAT
AGAGGAGCTGGACACAGAGATGCGGAAGGTCTGGAGCGCGCAGTCCCCAG
AACCCTGCTGA

Synonyms

Publications