rna2135, rna2135 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2135
Unique Name	rna2135
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1169
Alignment location	CM002458.1:957169..959980 -

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Properties


Property Name	Value
Product	ppgpp synthetase
Orig transcript id	gnl\|cribi\|Naga_100009g26.649.mrna
Orig protein id	gnl\|cribi\|Naga_100009g26.649
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:957169..959980 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g26	gene2039	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28606.1	cds2127	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2135	rna2135-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:957169..959980-
coding sequence from alignment at CM002458.1:957169..959980-

mRNA sequence

>rna2135 ID=rna2135|Name=rna2135|organism=Nannochloropsis gaditana|type=mRNA|length=1169bp
TGACCGCCTTTTCTACGTGGATGACGCGAGGTAGACTGTACACATTGAGT
GGGGAGCTGCATGTCCTGGCTGCGCCATCTCACCGCGAGCAGGCTTCCCC
GAAGAGGCGAGGCGATGTGGTCGTCATTCTCGCTAACAGCCGAAAAGCTG
TAGCTCTTAGGGAGTGCCTGAAGAAGGGTAGGTGGAAGAGAGAAAGTACC
TCCGTTTTGTTCCCGACCTGTGCTACTTGACCCAATCTGCCGCATCGTAT
TAGGCTACATCTTTGTTAAATGTCGAGGCGCAAATTTGTAGTGATTTTGA
GGAAAGGCCATTGAGAAGATAAGGTAGACGAAGTTGTGATAATCGAAATT
AGGATTTTACAGCGTTCGTAATCATGCGTCTTTACAGGCAAATAAAAAAG
GCATCAATGTCGCGCTCACCAGAAGTCCTGCAAACGTCGAACTCAGCCCT
GTCTTATGCTTCACCTTCGCAAGCACCTTCAGGGGCGGCAATCATGATGC
CTACTGCTCCGGCATTGCCCGGAAGATCAACGAACACCCCAAATACGCCG
ACAGGCACCGAGGAGCGCAAGCGTGACACACCTGAAGGGCCAAAACCTTC
CCCGCTTGCAGGCACGCCCGCATCTATGAAAGCAGAGGAGGCACCTGTTT
CGTCGAAGAAAGCAAGGAATGCTCCGATTCCACCACTATCAACATCGAAT
GCTTACGTGACAGAGGACACCACGCTGGCAATACCAAGGGCGTCAATAAA
GCGAATTATGAAGCTCGATCCGGACACAAAGCAATTGTCCCAAGATGCTA
TTATGGTGATGGCAAAAGCCACAGAGTTGTTCATCGACAAGCTAGCGAAG
GCCTCGCATTCGATGGCCGTCACCAACAAACGAAAAACAATAAAGTACGA
GGACATTGCCGATGCGCGCTTTTCTCAGAAAAACATGGAGTTCTTGGACG
GTGTGGTTCCTCAAATTCCATAGAAAAGAAGGAGGCGAGGGCGGATGCAG
CACAGCTTGTAAATAAAAAGCGAGGAATGTCACAACCAAGTACCCTTGCA
TTAGTCATTTGAGGCTCCATTGGCTCAATATTTTTTTCTATTTTCAAAGG
GCTCTTTCATCGTTGCACCAATCATGACAGACTCAAAAACTGCACGCATC
ACGCTTTGTACACACAATG

protein sequence of rna2135

>rna2135-protein ID=rna2135-protein|Name=rna2135|organism=Nannochloropsis gaditana|type=polypeptide|length=845bp
MTLCTDRPWGQPAELLGFPAPAGSPARLKLPDRQPSGNMVTNFKKKIRRS
LQLLLLIPPLYRVNGWVSGSIQSLERHHHHAPRRRQPSANKVLSSPPTLH
NIKAAVTPAPTDGSRNEYEDVRDDEDATELQKQITIELTDWVSEGEELWQ
EAFSTPRDEKRHRGKSEPGDNGMGHSTRPSNGLFTTVLGFRSAAHDDLSH
GQAAHQLPVRLQREVNLVWYEIQRGDRMAYLRAEERDRVKQQLVVLAFFR
TLFDHPSQVLNTQSAEACFQQADVNRDGQLSFEEFLRWYTASYDDQGPKS
PEGRDSSEEEGGSTEETAGALVPFGQGAAARRLEGLSMTEVLRTFLAQKE
HVSEAGPEADNKSEEQVLADLDRVIETTQVLLELEADVETVLAALATYFL
GLDAEDSEDLTEKLAVVRSQCGPVVHQIVRDSTRLGGLFQASPETRQYRR
NPREYYTMLDLDHRNAQLVRQHLVNENSDARAFVVHMAGLLHALRNQYRM
PVHARHVLALESLQLYVPVASALGLGSRLKEMEELSYRALFPESYESFAS
WHKNFADLGQVALVIAKKKIAARIEADVQGLRRFLEGYEIHGRVKSVVSA
FKKVYRKDKLPEELHDMLGLRVILFPSLGTGPRGRFLRGQLARKKNALPA
WSTATTVALGDGASEGYGERGNVGGRNSDGTQRALGPAGATPVFSSPLPS
ASRLELEAWLCHQVHAVVASLWEEVPGRYKNYVDAPKPNGYRSLHTGVYL
MEGGGTAEIQIRTAGMHAEAEDGIASHALYKAELQTRDQVEDFQEQLGAA
RAATPAGEAAAKTETGKPALLLPASASSASWAVTVALPGEASSGG

mRNA from alignment at CM002458.1:957169..959980-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2135 ID=rna2135|Name=rna2135|organism=Nannochloropsis gaditana|type=mRNA|length=2812bp|location=Sequence derived from alignment at CM002458.1:957169..959980- (Nannochloropsis gaditana)
CGCCCTGCTTCCCGACCGGTCCTGGTGCTGATACCGTTCACATCAAACTT
AATTGACGACGCACCGTCACTGGACGATTTTGGACCAACATATGACTCTA
TGCACAGACAGACCTTGGGGGCAGCCCGCAGAGCTCTTGGGGTTTCCCGC
CCCGGCGGGCAGCCCAGCACGCTTGAAGCTTCCCGATCGTCAACCTTCAG
GCAACATGGTTACCAATTTTAAGAAAAAAATAAGAAGGAGTCTGCAGCTC
CTCCTGCTTATACCTCCCTTATATAGGGTTAACGGGTGGGTATCTGGCAG
CATTCAAAGCCTAGAACGGCATCACCACCACGCGCCGCGAAGAAGACAGC
CGTCTGCCAACAAGGTCCTTTCCTCTCCGCCAACCTTGCACAATATAAAG
GCAGCTGTTACACCCGCTCCCACGGATGGCAGTCGTAATGAATATGAAGA
TGTCCGGGACGATGAAGACGCGACTGAGCTCCAAAAACAAATAACAATAG
AACTGACCGACTGGGTCTCGGAGGGGGAGGAGCTGTGGCAGGAAGCATTC
TCAACGCCGCGCGATGAGAAGAGACACAGAGGTAAATCAGAGCCAGGCGA
TAATGGCATGGGGCACTCCACTAGACCATCAAATGGTCTTTTTACAACGG
TATTGGGTTTTCGCAGTGCGGCGCATGACGACCTTTCCCACGGGCAAGCA
GCTCATCAACTTCCTGTAAGGCTCCAGCGCGAGGTGAATTTGGTGTGGTA
TGAGATCCAGCGAGGGGATCGGATGGCGTATCTACGTGCAGAAGAGCGAG
ATAGGGTGAAACAGCAGCTCGTGGTGCTAGCCTTTTTTCGTACCTTGTTT
GATCACCCGTCCCAGGTGTTGAACACCCAGAGCGCCGAGGCCTGCTTCCA
GCAAGCGGACGTGAATCGAGACGGACAACTCAGTTTCGAGGAGTTTCTCC
GATGGTACACAGCCAGTTACGATGATCAGGGACCAAAATCGCCGGAAGGA
AGAGACAGCAGCGAGGAGGAGGGCGGCAGCACTGAGGAGACGGCTGGGGC
ACTTGTCCCGTTTGGGCAGGGAGCTGCAGCCAGAAGGTTGGAGGGCCTGT
CGATGACAGAGGTGCTGCGCACGTTTTTGGCACAAAAAGAGCATGTGTCC
GAAGCAGGACCCGAGGCGGACAACAAAAGCGAGGAGCAAGTCCTCGCGGA
CCTGGACCGTGTGATCGAGACCACGCAAGTGCTCCTGGAGCTGGAGGCGG
ACGTGGAAACCGTCCTCGCCGCACTCGCCACCTATTTCCTGGGCCTGGAT
GCAGAAGACTCGGAGGACCTGACCGAGAAACTGGCGGTAGTACGCTCTCA
ATGTGGACCGGTCGTGCATCAGATCGTCCGGGACAGCACCCGTCTAGGAG
GCCTCTTTCAGGCGTCGCCCGAGACGCGGCAATATCGCCGCAACCCGCGC
GAGTACTACACGATGCTCGACTTGGATCATCGCAACGCCCAGCTGGTCCG
GCAGCACCTGGTGAACGAGAACAGCGACGCCAGGGCTTTTGTGGTCCACA
TGGCCGGCCTTCTCCACGCGCTACGGAACCAATACCGGATGCCTGTGCAC
GCCCGTCACGTCCTTGCCCTGGAGAGCCTTCAGCTGTACGTCCCTGTCGC
CTCCGCCCTTGGTCTGGGCTCCCGCTTGAAAGAGATGGAGGAACTCAGCT
ACCGGGCTCTCTTCCCTGAATCGTACGAAAGCTTCGCCTCTTGGCACAAA
AACTTTGCGGACTTGGGTCAAGTAGCCTTGGTGATTGCGAAAAAAAAAAT
CGCGGCCAGGATCGAAGCCGACGTGCAAGGTCTCCGCCGTTTCTTGGAGG
GATACGAGATCCACGGTCGGGTCAAATCGGTCGTTTCCGCGTTCAAGAAG
GTCTACCGGAAGGACAAGCTGCCCGAGGAGCTCCATGACATGCTGGGCCT
GCGCGTCATCCTCTTCCCCTCCTTGGGCACCGGACCCCGTGGGAGGTTCC
TTCGCGGCCAGCTCGCTCGAAAAAAGAACGCGTTGCCTGCCTGGTCGACG
GCGACTACGGTGGCTCTCGGAGATGGCGCGTCCGAGGGGTACGGCGAGCG
TGGCAATGTGGGTGGCCGGAACTCGGATGGCACACAGAGGGCTCTGGGTC
CCGCGGGAGCGACCCCTGTCTTCTCCTCCCCCTTGCCGTCAGCAAGCCGC
CTCGAGCTGGAAGCCTGGCTGTGTCATCAAGTGCATGCCGTGGTCGCCTC
TCTGTGGGAGGAGGTGCCCGGGAGGTACAAAAACTATGTGGATGCACCCA
AGCCGAACGGGTACCGGTCCCTCCACACGGGCGTCTATCTGATGGAGGGG
GGGGGGACGGCCGAGATTCAGATTCGAACAGCGGGCATGCATGCCGAAGC
GGAGGATGGAATTGCCAGCCACGCGTTGTACAAAGCAGAACTGCAGACCA
GGGACCAAGTCGAAGACTTCCAGGAGCAGTTGGGGGCAGCCCGCGCCGCT
ACGCCCGCCGGGGAGGCGGCCGCCAAGACGGAGACAGGGAAGCCGGCCCT
GTTGCTCCCCGCCTCCGCTAGCTCGGCGTCATGGGCAGTAACGGTGGCAT
TACCTGGTGAGGCGTCCTCAGGGGGCTGAAGCCATTTATGAAGCCCGGCG
GAGGCTGGGGCTGTTCGAGGTCCTCGGCTTCAAAGATGTATATTTCATTG
TGTGTACAAAGCGTGATGCGTGCAGTTTTTGAGTCTGTCATGATTGGTGC
AACGATGAAAGAGCCCTTTGAAAATAGAAAAAAATATTGAGCCAATGGAG
CCTCAAATGACT

Coding sequence (CDS) from alignment at CM002458.1:957169..959980-

>rna2135 ID=rna2135|Name=rna2135|organism=Nannochloropsis gaditana|type=CDS|length=2538bp|location=Sequence derived from alignment at CM002458.1:957169..959980- (Nannochloropsis gaditana)
ATGACTCTATGCACAGACAGACCTTGGGGGCAGCCCGCAGAGCTCTTGGG
GTTTCCCGCCCCGGCGGGCAGCCCAGCACGCTTGAAGCTTCCCGATCGTC
AACCTTCAGGCAACATGGTTACCAATTTTAAGAAAAAAATAAGAAGGAGT
CTGCAGCTCCTCCTGCTTATACCTCCCTTATATAGGGTTAACGGGTGGGT
ATCTGGCAGCATTCAAAGCCTAGAACGGCATCACCACCACGCGCCGCGAA
GAAGACAGCCGTCTGCCAACAAGGTCCTTTCCTCTCCGCCAACCTTGCAC
AATATAAAGGCAGCTGTTACACCCGCTCCCACGGATGGCAGTCGTAATGA
ATATGAAGATGTCCGGGACGATGAAGACGCGACTGAGCTCCAAAAACAAA
TAACAATAGAACTGACCGACTGGGTCTCGGAGGGGGAGGAGCTGTGGCAG
GAAGCATTCTCAACGCCGCGCGATGAGAAGAGACACAGAGGTAAATCAGA
GCCAGGCGATAATGGCATGGGGCACTCCACTAGACCATCAAATGGTCTTT
TTACAACGGTATTGGGTTTTCGCAGTGCGGCGCATGACGACCTTTCCCAC
GGGCAAGCAGCTCATCAACTTCCTGTAAGGCTCCAGCGCGAGGTGAATTT
GGTGTGGTATGAGATCCAGCGAGGGGATCGGATGGCGTATCTACGTGCAG
AAGAGCGAGATAGGGTGAAACAGCAGCTCGTGGTGCTAGCCTTTTTTCGT
ACCTTGTTTGATCACCCGTCCCAGGTGTTGAACACCCAGAGCGCCGAGGC
CTGCTTCCAGCAAGCGGACGTGAATCGAGACGGACAACTCAGTTTCGAGG
AGTTTCTCCGATGGTACACAGCCAGTTACGATGATCAGGGACCAAAATCG
CCGGAAGGAAGAGACAGCAGCGAGGAGGAGGGCGGCAGCACTGAGGAGAC
GGCTGGGGCACTTGTCCCGTTTGGGCAGGGAGCTGCAGCCAGAAGGTTGG
AGGGCCTGTCGATGACAGAGGTGCTGCGCACGTTTTTGGCACAAAAAGAG
CATGTGTCCGAAGCAGGACCCGAGGCGGACAACAAAAGCGAGGAGCAAGT
CCTCGCGGACCTGGACCGTGTGATCGAGACCACGCAAGTGCTCCTGGAGC
TGGAGGCGGACGTGGAAACCGTCCTCGCCGCACTCGCCACCTATTTCCTG
GGCCTGGATGCAGAAGACTCGGAGGACCTGACCGAGAAACTGGCGGTAGT
ACGCTCTCAATGTGGACCGGTCGTGCATCAGATCGTCCGGGACAGCACCC
GTCTAGGAGGCCTCTTTCAGGCGTCGCCCGAGACGCGGCAATATCGCCGC
AACCCGCGCGAGTACTACACGATGCTCGACTTGGATCATCGCAACGCCCA
GCTGGTCCGGCAGCACCTGGTGAACGAGAACAGCGACGCCAGGGCTTTTG
TGGTCCACATGGCCGGCCTTCTCCACGCGCTACGGAACCAATACCGGATG
CCTGTGCACGCCCGTCACGTCCTTGCCCTGGAGAGCCTTCAGCTGTACGT
CCCTGTCGCCTCCGCCCTTGGTCTGGGCTCCCGCTTGAAAGAGATGGAGG
AACTCAGCTACCGGGCTCTCTTCCCTGAATCGTACGAAAGCTTCGCCTCT
TGGCACAAAAACTTTGCGGACTTGGGTCAAGTAGCCTTGGTGATTGCGAA
AAAAAAAATCGCGGCCAGGATCGAAGCCGACGTGCAAGGTCTCCGCCGTT
TCTTGGAGGGATACGAGATCCACGGTCGGGTCAAATCGGTCGTTTCCGCG
TTCAAGAAGGTCTACCGGAAGGACAAGCTGCCCGAGGAGCTCCATGACAT
GCTGGGCCTGCGCGTCATCCTCTTCCCCTCCTTGGGCACCGGACCCCGTG
GGAGGTTCCTTCGCGGCCAGCTCGCTCGAAAAAAGAACGCGTTGCCTGCC
TGGTCGACGGCGACTACGGTGGCTCTCGGAGATGGCGCGTCCGAGGGGTA
CGGCGAGCGTGGCAATGTGGGTGGCCGGAACTCGGATGGCACACAGAGGG
CTCTGGGTCCCGCGGGAGCGACCCCTGTCTTCTCCTCCCCCTTGCCGTCA
GCAAGCCGCCTCGAGCTGGAAGCCTGGCTGTGTCATCAAGTGCATGCCGT
GGTCGCCTCTCTGTGGGAGGAGGTGCCCGGGAGGTACAAAAACTATGTGG
ATGCACCCAAGCCGAACGGGTACCGGTCCCTCCACACGGGCGTCTATCTG
ATGGAGGGGGGGGGGACGGCCGAGATTCAGATTCGAACAGCGGGCATGCA
TGCCGAAGCGGAGGATGGAATTGCCAGCCACGCGTTGTACAAAGCAGAAC
TGCAGACCAGGGACCAAGTCGAAGACTTCCAGGAGCAGTTGGGGGCAGCC
CGCGCCGCTACGCCCGCCGGGGAGGCGGCCGCCAAGACGGAGACAGGGAA
GCCGGCCCTGTTGCTCCCCGCCTCCGCTAGCTCGGCGTCATGGGCAGTAA
CGGTGGCATTACCTGGTGAGGCGTCCTCAGGGGGCTGA

Synonyms

Publications