rna2132, rna2132 (mRNA) Nannochloropsis gaditana

Overview
Namerna2132
Unique Namerna2132
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length903
Alignment locationCM002458.1:950713..951342 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial ribosomal l36 protein
Orig transcript idgnl|cribi|Naga_100009g29.667.mrna
Orig protein idgnl|cribi|Naga_100009g29.667
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:950713..951342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g29gene2036Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2132rna2132-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28624.1cds2124Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2132 ID=rna2132|Name=rna2132|organism=Nannochloropsis gaditana|type=mRNA|length=903bp
ATGTCACATTTGCTTCCACTTTCTCCTTACGCGGTTGCTGCCTTCTTAAT
TATATTTTGGGGCTATCTTACCTTGAATGCGGCACTTTACATAGTCTTCT
ACCAATGCCGCTGTTCCGAAACGGAAAGCTGGAAAATTCAGACCCACAAT
ACCAGACACATCAACAAGAGGGAGACTGGTACAATTTATGGTGCATCCTC
TGAAGGCAGAAAGCGTCAGGTGACATCAATTTCGAAGCTAACTTCAACAG
TCAATAATAACACCCTTATTTCTTATGCGCTTGCGAATCTTGCGGACGTG
CCCTGGCCCTGGCGACGAGGAGTAAAGGGCCGAGCCCCCCAGCATGCGCT
ATTTGCGACATGCAACCTGATGATAGCGTCGCTTTTCGCACTCCTGACGG
CTGAAGGAACAGTGCGAGGCATTGGAAGTCAGCTGAAGACTGGTCATCCG
CATGTACTTGGGACCAGGGAAGTAATTTGGTGGCTCTTGGGTGAGAGTTG
GTTAGTAGTTGCGAGTCTGGGATGGCAGAGTGCATGGGAGTACTACTGGC
ATCGTTTGATGCATTATGGACCCGTCTACCGGCGATTCCACAAACACCAT
CACTTTTATAAAGCCCCGGCTCCTTTTGATGATATGTACATCGCTCCTTT
GGAGGCGTTGGGCTACTACTTCATTCTTTACTCTCCTGCCTTGGTGCTTC
CCATGCATGTGCTCTCCTTTGCCGTATACTTGACATTGCTCGGCTTGTGT
GGGATCCTGGATCATTCTGGGATCGATGTCCGATTGCCGAGGGTTTATGA
TACTCGCTTCCACGATATCCATCACTCGTACACAAATGCCAATTTCGGCT
TCCCATTTCCTTTTTTGGATGTCTTGCACGGCACCTACCGCAAAGAGTCC
TAG
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protein sequence of rna2132

>rna2132-protein ID=rna2132-protein|Name=rna2132|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSS
DAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMN
SISPAVQAFVNNIRVFFSR
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mRNA from alignment at CM002458.1:950713..951342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2132 ID=rna2132|Name=rna2132|organism=Nannochloropsis gaditana|type=mRNA|length=630bp|location=Sequence derived from alignment at CM002458.1:950713..951342+ (Nannochloropsis gaditana)
CCATACACATGCGTCTAAAGTCATATACACACGTGCCAAACATTAGCTTC
TGCCTTATGGATACGAAAACCGTAGAGGCAGTACCGCACTCGTGGAGTGA
TTATCTTCACGAGTGTTTGAATTACGCTAACTTTTGTTCAAAATGCTCAT
GGACCCCCGTCCACTGTGGCGGTACCCATTCCCCACGAATGCACATGAAA
CCTCTACAGTCAGAGACAGGCAGTGATGAAGCTTCGAACCGCCCTGCGGC
GATTGTGCACGTCCTGCTACATGGTGCGGCGGCAAGGCCGGCTTTTTGTT
TACTGTAAGGCCAACCCGAGACACAAGCAACGTCAGGGGCGAGGACCGCG
CCGCAAGCTCCACTCTTCTAGCTCTGATGCGGCATTCCAGGATGCGCATA
TGTCCTGCAGCTGCAGCGAGCACGGTCAAGACACCAGTTTTACCCTTTAT
AAGGAGGGTATAGGAAACCCATTGTGGCTGCAGCGGAAGGCTGGCCCTGT
TGCGTCATTGCACGATTTGATGAATTCGATTTCCCCTGCTGTGCAGGCCT
TTGTGAATAATATACGTGTCTTCTTCTCAAGATAGACGCTGTACTCAGCA
CCAAAGAATATTTTGTGGTTCTTGACGAAT
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Coding sequence (CDS) from alignment at CM002458.1:950713..951342+

>rna2132 ID=rna2132|Name=rna2132|organism=Nannochloropsis gaditana|type=CDS|length=360bp|location=Sequence derived from alignment at CM002458.1:950713..951342+ (Nannochloropsis gaditana)
ATGAAGCTTCGAACCGCCCTGCGGCGATTGTGCACGTCCTGCTACATGGT
GCGGCGGCAAGGCCGGCTTTTTGTTTACTGTAAGGCCAACCCGAGACACA
AGCAACGTCAGGGGCGAGGACCGCGCCGCAAGCTCCACTCTTCTAGCTCT
GATGCGGCATTCCAGGATGCGCATATGTCCTGCAGCTGCAGCGAGCACGG
TCAAGACACCAGTTTTACCCTTTATAAGGAGGGTATAGGAAACCCATTGT
GGCTGCAGCGGAAGGCTGGCCCTGTTGCGTCATTGCACGATTTGATGAAT
TCGATTTCCCCTGCTGTGCAGGCCTTTGTGAATAATATACGTGTCTTCTT
CTCAAGATAG
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Synonyms
Publications