EWM28624.1, cds2124 (CDS) Nannochloropsis gaditana

Overview
NameEWM28624.1
Unique Namecds2124
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:950938..951297 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28624.1
Productmitochondrial ribosomal l36 protein
Orig transcript idgnl|cribi|Naga_100009g29.667.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:950938..951297 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000473Ribosomal_L36
Homology
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|585111042|gb|EWM28624.1| (mitochondrial ribosomal l36 protein [Nannochloropsis gaditana])

HSP 1 Score: 250.366 bits (638), Expect = 2.358e-84
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 119
            MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR
Sbjct:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 119          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|553195006|ref|XP_005856072.1| (mitochondrial ribosomal l36 protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292992|gb|EKU20293.1| mitochondrial ribosomal l36 protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 249.21 bits (635), Expect = 9.317e-84
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 119
            MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTS TLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR
Sbjct:    8 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSLTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 126          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|936524476|emb|CDO57661.1| (similar to Saccharomyces cerevisiae YPL183W-A RTC6 Protein involved in translation [Geotrichum candidum])

HSP 1 Score: 63.1586 bits (152), Expect = 6.092e-11
Identity = 22/38 (57.89%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
            MK+++++++ C +CY+VRR+GR++VYCK NP+HKQRQG
Sbjct:   32 MKVKSSVKKFCKACYIVRRKGRVYVYCKTNPKHKQRQG 69          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|748546870|emb|CDO94919.1| (unnamed protein product [Kluyveromyces dobzhanskii CBS 2104])

HSP 1 Score: 63.1586 bits (152), Expect = 7.036e-11
Identity = 24/37 (64.86%), Postives = 34/37 (91.89%), Query Frame = 0
Query:    2 KLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
            K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct:   44 KVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 80          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|1091583920|emb|SCU81103.1| (LAFA_0C02762g1_1 [Lachancea sp. CBS 6924])

HSP 1 Score: 62.7734 bits (151), Expect = 7.857e-11
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
             K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct:   37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|1091724501|emb|SCU84300.1| (LADA_0D00936g1_1 [Lachancea dasiensis CBS 10888])

HSP 1 Score: 62.7734 bits (151), Expect = 9.760e-11
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
             K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct:   37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|255719638|ref|XP_002556099.1| (KLTH0H05016p [Lachancea thermotolerans CBS 6340] >gi|238942065|emb|CAR30237.1| KLTH0H05016p [Lachancea thermotolerans CBS 6340])

HSP 1 Score: 62.3882 bits (150), Expect = 1.096e-10
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
             K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct:   36 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 73          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|1091735637|emb|SCU99193.1| (LANO_0F01090g1_1 [Lachancea nothofagi CBS 11611])

HSP 1 Score: 62.3882 bits (150), Expect = 1.100e-10
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
             K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct:   37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|928068337|ref|XP_013883871.1| (PREDICTED: 39S ribosomal protein L36, mitochondrial [Austrofundulus limnaeus])

HSP 1 Score: 63.929 bits (154), Expect = 1.129e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
            MK R++L+R C  C+ VRR+GRLFVYCK NPRHKQRQG
Sbjct:   83 MKTRSSLKRRCKDCFFVRRRGRLFVYCKTNPRHKQRQG 120          
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|761757264|emb|CEP64770.1| (LALA0S13e02608g1_1 [Lachancea lanzarotensis])

HSP 1 Score: 62.3882 bits (150), Expect = 1.199e-10
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
             K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct:   37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74          
The following BLAST results are available for this feature:
BLAST of EWM28624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111042|gb|EWM28624.1|2.358e-84100.00mitochondrial ribosomal l36 protein [Nannochlorops... [more]
gi|553195006|ref|XP_005856072.1|9.317e-8499.16mitochondrial ribosomal l36 protein, partial [Nann... [more]
gi|936524476|emb|CDO57661.1|6.092e-1157.89similar to Saccharomyces cerevisiae YPL183W-A RTC6... [more]
gi|748546870|emb|CDO94919.1|7.036e-1164.86unnamed protein product [Kluyveromyces dobzhanskii... [more]
gi|1091583920|emb|SCU81103.1|7.857e-1163.16LAFA_0C02762g1_1 [Lachancea sp. CBS 6924][more]
gi|1091724501|emb|SCU84300.1|9.760e-1163.16LADA_0D00936g1_1 [Lachancea dasiensis CBS 10888][more]
gi|255719638|ref|XP_002556099.1|1.096e-1063.16KLTH0H05016p [Lachancea thermotolerans CBS 6340] >... [more]
gi|1091735637|emb|SCU99193.1|1.100e-1063.16LANO_0F01090g1_1 [Lachancea nothofagi CBS 11611][more]
gi|928068337|ref|XP_013883871.1|1.129e-1071.05PREDICTED: 39S ribosomal protein L36, mitochondria... [more]
gi|761757264|emb|CEP64770.1|1.199e-1063.16LALA0S13e02608g1_1 [Lachancea lanzarotensis][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2132rna2132Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications