EWM28624.1, cds2124 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|585111042|gb|EWM28624.1| (mitochondrial ribosomal l36 protein [Nannochloropsis gaditana]) HSP 1 Score: 250.366 bits (638), Expect = 2.358e-84 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 119
MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR
Sbjct: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 119
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|553195006|ref|XP_005856072.1| (mitochondrial ribosomal l36 protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292992|gb|EKU20293.1| mitochondrial ribosomal l36 protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 249.21 bits (635), Expect = 9.317e-84 Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 119
MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTS TLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR
Sbjct: 8 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSLTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 126
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|936524476|emb|CDO57661.1| (similar to Saccharomyces cerevisiae YPL183W-A RTC6 Protein involved in translation [Geotrichum candidum]) HSP 1 Score: 63.1586 bits (152), Expect = 6.092e-11 Identity = 22/38 (57.89%), Postives = 35/38 (92.11%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
MK+++++++ C +CY+VRR+GR++VYCK NP+HKQRQG
Sbjct: 32 MKVKSSVKKFCKACYIVRRKGRVYVYCKTNPKHKQRQG 69
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|748546870|emb|CDO94919.1| (unnamed protein product [Kluyveromyces dobzhanskii CBS 2104]) HSP 1 Score: 63.1586 bits (152), Expect = 7.036e-11 Identity = 24/37 (64.86%), Postives = 34/37 (91.89%), Query Frame = 0
Query: 2 KLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct: 44 KVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 80
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|1091583920|emb|SCU81103.1| (LAFA_0C02762g1_1 [Lachancea sp. CBS 6924]) HSP 1 Score: 62.7734 bits (151), Expect = 7.857e-11 Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct: 37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|1091724501|emb|SCU84300.1| (LADA_0D00936g1_1 [Lachancea dasiensis CBS 10888]) HSP 1 Score: 62.7734 bits (151), Expect = 9.760e-11 Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct: 37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|255719638|ref|XP_002556099.1| (KLTH0H05016p [Lachancea thermotolerans CBS 6340] >gi|238942065|emb|CAR30237.1| KLTH0H05016p [Lachancea thermotolerans CBS 6340]) HSP 1 Score: 62.3882 bits (150), Expect = 1.096e-10 Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct: 36 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 73
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|1091735637|emb|SCU99193.1| (LANO_0F01090g1_1 [Lachancea nothofagi CBS 11611]) HSP 1 Score: 62.3882 bits (150), Expect = 1.100e-10 Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct: 37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|928068337|ref|XP_013883871.1| (PREDICTED: 39S ribosomal protein L36, mitochondrial [Austrofundulus limnaeus]) HSP 1 Score: 63.929 bits (154), Expect = 1.129e-10 Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
MK R++L+R C C+ VRR+GRLFVYCK NPRHKQRQG
Sbjct: 83 MKTRSSLKRRCKDCFFVRRRGRLFVYCKTNPRHKQRQG 120
BLAST of EWM28624.1 vs. NCBI_GenBank
Match: gi|761757264|emb|CEP64770.1| (LALA0S13e02608g1_1 [Lachancea lanzarotensis]) HSP 1 Score: 62.3882 bits (150), Expect = 1.199e-10 Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0
Query: 1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 38
K+RTA+++ C+ CYMVRR+GR++VYCK+N +HKQRQG
Sbjct: 37 FKVRTAIKKFCSDCYMVRRKGRVYVYCKSNKKHKQRQG 74 The following BLAST results are available for this feature:
BLAST of EWM28624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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