rna2131, rna2131 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2131
Unique Name	rna2131
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1326
Alignment location	CM002458.1:949257..950457 -

Link to JBrowse

Properties


Property Name	Value
Product	c-4 sterol methyl oxidase
Orig transcript id	gnl\|cribi\|Naga_100009g30.656.mrna
Orig protein id	gnl\|cribi\|Naga_100009g30.656
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:949257..950457 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g30	gene2035	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2131	rna2131-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28613.1	cds2123	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:949257..950457-
coding sequence from alignment at CM002458.1:949257..950457-

mRNA sequence

>rna2131 ID=rna2131|Name=rna2131|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp
ATGACCAGCCATCTTCACGATCACACCCAGTCACGAAACCGTGTCACGAA
TGGCGATGTAAATGACAAACGGCTTAACCAAGATGGTGCTGGACAAGAAA
GCACGGAACAAGCTCACCATCAGCAGCATGGAGCCCATAAAGATAGCGAC
GGACGACCCCGACTCATAAAGATTGTCCTCACTGGGGGACCCTGCGGTGG
TAAAACCACGTCGCTTGCCCGCTTGTCGGAATTCTTCCGCACGCACGGCT
TTCGTGTGTTTACCGTCCCTGAAGCTGCGACGACCCTGTGGTCGAACGGC
GTTGCACTCGCGGATATCTTGGGTTCGAATGAGACCCAGTATTGGTTCCA
GGATGCAGTGCTTGATTTTCAGATCCATCTCGAAGATGGAATGGAGCGAA
TAGCCCGCTCTTTAGGAAGGCCATCGGTAATACTGTGTGATCGGGGCACT
CTGGATGGCGCGGCCTACGTCAGCAAGGAACTTTGGGAAGAATTAGTTAA
GAAGAAAGGCCTCGAGCTTTTGAGCATTCGTGAAGGTAGATATGATGCAA
TCTTCCATTTGGTGACTGCGGCAATGGGTGCGGAACCTTTCTACTCTTTG
CTGACCAATGTGACCCGCACGGAGTCTCCTGGGTTCGCGCGAGAAGTAGA
CATGAAGACGCAGGGTGTGTGGAACGGGCACCCTCGGCATTACGTCATTG
ACAATTCTACTGACTTTGAGGGGAAACTCGCTCGGGTCCAAGATGAAGCG
GCTCGCCTGGTGGGACTACCACAGCTGCCTCGTGGTGCGGATAGGTGGTT
TTTGCGAAAAAAGCCAAAGCCGGATTCTTTTACCGTGCCTTTTGAAAAAA
CCCAGGTCCGTAAGGTGTATTTGATGAACGTTGGCCGGCCTCTGCCAGAC
GGCAGGAAAGTAAGCGTTGAGTACAATTACGTTGAGGAGAGGTCTCAAGA
TGGATCTGTGGCCTATGCGCACACCAGCAAGCAACGCTTGGATGATGGAC
ACGAGGCAGAATTGAAACGAATCATCGACGCACGCGAGTTTTACTCTCGC
AGTACCACAATGGCTGATCCATCCAGGAAGGAGGTCTTTCAAACACGGTA
TTCATTTTTATGGGCACAACAAGCGTTTGTGGTAATCCACCATCATTCAG
ACGCCAAGACAAAGTTTGGACCTGAACTTTTCACGTTACGCCGGCAGGCA
AAAGGTGGAATCCCAGAGTTCCCGCCTTTTCTGGACGTTGGAGAGCACAT
CGAGGATGAAGATGGACTCTTTCCTTTTCCCACGCGGCCATCACCGACAA
AGAGTAATACAACATCAATGAAATAG

protein sequence of rna2131

>rna2131-protein ID=rna2131-protein|Name=rna2131|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MSHLLPLSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHN
TRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADV
PWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHP
HVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHH
HFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLC
GILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES

mRNA from alignment at CM002458.1:949257..950457-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2131 ID=rna2131|Name=rna2131|organism=Nannochloropsis gaditana|type=mRNA|length=1201bp|location=Sequence derived from alignment at CM002458.1:949257..950457- (Nannochloropsis gaditana)
ATGTCACATTTGCTTCCACTTTCTCCTTACGCGGTTGCTGCCTTCTTAAT
TATATTTTGGGGCTATCTTACCTTGAATGCGGCACTTTACATAGTCTTCT
ACCAATGCCGCTGTTCCGAAACGGAAAGCTGGAAAATTCAGACCCACAAT
ACCAGACACATCAACAAGAGGGAGACTGGTACAATTTATGGTGCATCCTC
TGAAGGCAGAAAGCGTCAGGTGACATCAATTTCGAAGCTAACTTCAACAG
TCAATAATAACACCCTTATTTCTTATGCGCTTGCGAATCTTGCGGACGTG
CCCTGGCCCTGGCGACGAGGAGTAAAGGGCCGAGCCCCCCAGCATGCGCT
ATTTGCGACATGCAACCTGATGATAGCGTCGCTTTTCGCACTCCTGACGG
CTGAAGGAACAGTGCGAGGCATTGGAAGTCAGCTGAAGACTGGTCATCCG
CATGTACTTGGGACCAGGGAAGTAATTTGGTGGCTCTTGGGTGAGAGTTG
GTTAGTAGTTGCGAGTCTGGGATGGCAGAGTGCATGGGAGTACTACTGGC
ATCGTTTGATGCATTATGGACCCGTCTACCGGCGATTCCACAAACACCAT
CACTTTTATAAAGCCCCGGCTCCTTTTGATGATATGTACATCGCTCCTTT
GGAGGTAAGAGCCAGCTAATTTCTATTCAGCACTACCTTTGGTCTGCGTG
CTCACTTCAAGCTCCTCCTGATGTACAGGCGTTGGGCTACTACTTCATTC
TTTACTCTCCTGCCTTGGTGCTTCCCATGCATGTGCTCTCCTTTGCCGTA
TACTTGACATTGCTCGGCTTGTGTGGGATCCTGGATCATTCTGGGATCGA
TGTCCGATTGCCGAGGGTGAGTGTCGAGAGAGGTGGAGGATGGTCAGGAT
TGGCGGGCAAAGTCCTCACCAAAAAATGCGTTTCAGATAGCAAAGGTACT
TGCAGATGATCTTTACTGTAGTTTATGGAAGACATGTGCCCTCAGCGTGT
TCTAGCTCCCAAATCACTCATTAACATCTCGTCTCAGTATGGCATTGACG
TTGATGCTTATAAACATCCAAACCATCATATACACGACAGGTTTATGATA
CTCGCTTCCACGATATCCATCACTCGTACACAAATGCCAATTTCGGCTTC
CCATTTCCTTTTTTGGATGTCTTGCACGGCACCTACCGCAAAGAGTCCTA
G

Coding sequence (CDS) from alignment at CM002458.1:949257..950457-

>rna2131 ID=rna2131|Name=rna2131|organism=Nannochloropsis gaditana|type=CDS|length=2709bp|location=Sequence derived from alignment at CM002458.1:949257..950457- (Nannochloropsis gaditana)
GTTTATGATACTCGCTTCCACGATATCCATCACTCGTACACAAATGCCAA
TTTCGGCTTCCCATTTCCTTTTTTGGATGTCTTGCACGGCACCTACCGCA
AAGAGTCCTAGGCGTTGGGCTACTACTTCATTCTTTACTCTCCTGCCTTG
GTGCTTCCCATGCATGTGCTCTCCTTTGCCGTATACTTGACATTGCTCGG
CTTGTGTGGGATCCTGGATCATTCTGGGATCGATGTCCGATTGCCGAGGA
TGTCACATTTGCTTCCACTTTCTCCTTACGCGGTTGCTGCCTTCTTAATT
ATATTTTGGGGCTATCTTACCTTGAATGCGGCACTTTACATAGTCTTCTA
CCAATGCCGCTGTTCCGAAACGGAAAGCTGGAAAATTCAGACCCACAATA
CCAGACACATCAACAAGAGGGAGACTGGTACAATTTATGGTGCATCCTCT
GAAGGCAGAAAGCGTCAGGTGACATCAATTTCGAAGCTAACTTCAACAGT
CAATAATAACACCCTTATTTCTTATGCGCTTGCGAATCTTGCGGACGTGC
CCTGGCCCTGGCGACGAGGAGTAAAGGGCCGAGCCCCCCAGCATGCGCTA
TTTGCGACATGCAACCTGATGATAGCGTCGCTTTTCGCACTCCTGACGGC
TGAAGGAACAGTGCGAGGCATTGGAAGTCAGCTGAAGACTGGTCATCCGC
ATGTACTTGGGACCAGGGAAGTAATTTGGTGGCTCTTGGGTGAGAGTTGG
TTAGTAGTTGCGAGTCTGGGATGGCAGAGTGCATGGGAGTACTACTGGCA
TCGTTTGATGCATTATGGACCCGTCTACCGGCGATTCCACAAACACCATC
ACTTTTATAAAGCCCCGGCTCCTTTTGATGATATGTACATCGCTCCTTTG
GAGGTTTATGATACTCGCTTCCACGATATCCATCACTCGTACACAAATGC
CAATTTCGGCTTCCCATTTCCTTTTTTGGATGTCTTGCACGGCACCTACC
GCAAAGAGTCCTAGGCGTTGGGCTACTACTTCATTCTTTACTCTCCTGCC
TTGGTGCTTCCCATGCATGTGCTCTCCTTTGCCGTATACTTGACATTGCT
CGGCTTGTGTGGGATCCTGGATCATTCTGGGATCGATGTCCGATTGCCGA
GGATGTCACATTTGCTTCCACTTTCTCCTTACGCGGTTGCTGCCTTCTTA
ATTATATTTTGGGGCTATCTTACCTTGAATGCGGCACTTTACATAGTCTT
CTACCAATGCCGCTGTTCCGAAACGGAAAGCTGGAAAATTCAGACCCACA
ATACCAGACACATCAACAAGAGGGAGACTGGTACAATTTATGGTGCATCC
TCTGAAGGCAGAAAGCGTCAGGTGACATCAATTTCGAAGCTAACTTCAAC
AGTCAATAATAACACCCTTATTTCTTATGCGCTTGCGAATCTTGCGGACG
TGCCCTGGCCCTGGCGACGAGGAGTAAAGGGCCGAGCCCCCCAGCATGCG
CTATTTGCGACATGCAACCTGATGATAGCGTCGCTTTTCGCACTCCTGAC
GGCTGAAGGAACAGTGCGAGGCATTGGAAGTCAGCTGAAGACTGGTCATC
CGCATGTACTTGGGACCAGGGAAGTAATTTGGTGGCTCTTGGGTGAGAGT
TGGTTAGTAGTTGCGAGTCTGGGATGGCAGAGTGCATGGGAGTACTACTG
GCATCGTTTGATGCATTATGGACCCGTCTACCGGCGATTCCACAAACACC
ATCACTTTTATAAAGCCCCGGCTCCTTTTGATGATATGTACATCGCTCCT
TTGGAGGTTTATGATACTCGCTTCCACGATATCCATCACTCGTACACAAA
TGCCAATTTCGGCTTCCCATTTCCTTTTTTGGATGTCTTGCACGGCACCT
ACCGCAAAGAGTCCTAGGCGTTGGGCTACTACTTCATTCTTTACTCTCCT
GCCTTGGTGCTTCCCATGCATGTGCTCTCCTTTGCCGTATACTTGACATT
GCTCGGCTTGTGTGGGATCCTGGATCATTCTGGGATCGATGTCCGATTGC
CGAGGATGTCACATTTGCTTCCACTTTCTCCTTACGCGGTTGCTGCCTTC
TTAATTATATTTTGGGGCTATCTTACCTTGAATGCGGCACTTTACATAGT
CTTCTACCAATGCCGCTGTTCCGAAACGGAAAGCTGGAAAATTCAGACCC
ACAATACCAGACACATCAACAAGAGGGAGACTGGTACAATTTATGGTGCA
TCCTCTGAAGGCAGAAAGCGTCAGGTGACATCAATTTCGAAGCTAACTTC
AACAGTCAATAATAACACCCTTATTTCTTATGCGCTTGCGAATCTTGCGG
ACGTGCCCTGGCCCTGGCGACGAGGAGTAAAGGGCCGAGCCCCCCAGCAT
GCGCTATTTGCGACATGCAACCTGATGATAGCGTCGCTTTTCGCACTCCT
GACGGCTGAAGGAACAGTGCGAGGCATTGGAAGTCAGCTGAAGACTGGTC
ATCCGCATGTACTTGGGACCAGGGAAGTAATTTGGTGGCTCTTGGGTGAG
AGTTGGTTAGTAGTTGCGAGTCTGGGATGGCAGAGTGCATGGGAGTACTA
CTGGCATCGTTTGATGCATTATGGACCCGTCTACCGGCGATTCCACAAAC
ACCATCACTTTTATAAAGCCCCGGCTCCTTTTGATGATATGTACATCGCT
CCTTTGGAG

Synonyms

Publications