EWM28613.1, cds2123 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|585111031|gb|EWM28613.1| (c-4 sterol methyl oxidase [Nannochloropsis gaditana]) HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query: 1 MSHLLPLSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES 300
MSHLLPLSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES
Sbjct: 1 MSHLLPLSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES 300
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|813152323|ref|XP_012201229.1| (hypothetical protein SPRG_20243 [Saprolegnia parasitica CBS 223.65] >gi|641534124|gb|KDO28083.1| hypothetical protein SPRG_20243 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 183.341 bits (464), Expect = 2.447e-53 Identity = 95/215 (44.19%), Postives = 130/215 (60.47%), Query Frame = 0
Query: 82 STVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
S V + + ++ P P R + +AP H+ NL++AS+FA++ AEG VRG+ P L + V + +++ EYYWHR +H Y R HK HH+YK+P PFDDMY+ P+E + YY++LY P V MH SF+VY+ L+GL G+LDHSGI VR+P VYDTR H++HH NAN+GFPF +LDVLHGTY
Sbjct: 27 SLVATGSFLRVLFLDIVFYPSPSPRA-QPQAPDHSALTLFNLLVASVFAMMAAEGHVRGLSRMTFGPSPPPLSM----------ALQVGLACVFENTVEYYWHRFLHTRAPYARVHKVHHYYKSPRPFDDMYMHPVEGMAYYWVLYGPPYVFAMHWQSFSVYMALMGLFGLLDHSGIAVRMPLVYDTRDHELHHRRVNANYGFPFQYLDVLHGTY 230
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|1173937170|gb|OQR88019.1| (sterol desaturase [Achlya hypogyna]) HSP 1 Score: 176.407 bits (446), Expect = 1.288e-50 Identity = 91/196 (46.43%), Postives = 122/196 (62.24%), Query Frame = 0
Query: 101 PWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
P P R + +A H A NL++AS+FA+ TAE RG+ P T ++ +LG + +++ EYYWHR++H +Y R HK HH YK P PFDDMY+ P E + YY++LY P VLPMH+ SF VY+ L+G G+LDHSG+ VR+P VYDTR HD+HH+ N+GFPF LDV+HGTY
Sbjct: 53 PAPSPRA-QPKAADHNALALFNLLVASVFAMATAECHARGLSRMSFGPAP---STAMLLLQVLG-------ACVFENTIEYYWHRILHTRAMYTRIHKVHHHYKRPRPFDDMYMHPCEGMAYYWVLYGPPFVLPMHLHSFVVYMVLMGTFGLLDHSGVPVRIPFVYDTRDHDVHHTRVTYNYGFPFQLLDVVHGTY 237
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|255071383|ref|XP_002507773.1| (C-4 sterol methyl oxidase [Micromonas commoda] >gi|226523048|gb|ACO69031.1| C-4 sterol methyl oxidase [Micromonas commoda]) HSP 1 Score: 177.178 bits (448), Expect = 1.830e-50 Identity = 93/198 (46.97%), Postives = 125/198 (63.13%), Query Frame = 0
Query: 109 KGRAPQHALFATCNLMIASLFALLTAEGTVRGIG-------SQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLP-MHVLSFAVYLTLLGLCGILDHSGIDVRLP-RVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYR 297
GR P HA +ATCNL+++SLFA T E + G G S L + + + + L+G V ++ WQS EYYWHR MH VYR HK HH YK+P P+DD++I P E+ GY ILYSPA +P + V +F +Y+T++G CG+LDH G+ +R P YDT+FHD+HH +ANF FPFP +D LHGT+R
Sbjct: 86 DGRHPSHACYATCNLVVSSLFAGATCEAYLAGDGKLFGLFRSTLVNASAYSVASAYSV--LVG----AVLAVTWQSVLEYYWHRAMHLPRVYRLLHKFHHHYKSPQPWDDLFIHPAESFGYCLILYSPAFCVPSLPVQAFLLYMTIMGACGVLDHCGVKMRWPFGAYDTQFHDVHHRSFDANFAFPFPTMDRLHGTHR 277
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|145356368|ref|XP_001422404.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144582646|gb|ABP00721.1| predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 167.548 bits (423), Expect = 1.171e-46 Identity = 114/306 (37.25%), Postives = 151/306 (49.35%), Query Frame = 0
Query: 5 LPLSPYAVAAFLIIFWGYLTLNAALYIVFY-----QCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIG-SQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLP------RVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRK 298
+ +S AV AF + F+GY+ L+ AL + FY + S T S KIQ H KR GT+ S+ L L P G H LFA+ NL+ ++ FA + E RG + L G L +L W V ++ WQS EY WHR MH Y R+HK HH Y +P + D+ I PLEALGYY ILYSPA V+PM SF Y+ ++G+ G+LDHSG+DV + VYDT+FHD+HH+ N N+ FPF F+D GTY +
Sbjct: 1 MGVSNTAVCAFGVQFFGYIALSTALELWFYVDWSGKRDSSATHSRKIQRH------KRACGTVRAHKSDP--------------------WGLPLYQLLCARKPRPDGRDECFEHHRLFASVNLLTSATFAGVVGETVNRGAPYTSLYGGSAFDLNCG-----ILACVWAFVKAVAWQSVAEYAWHRAMHSRFAYARWHKAHHAYASPCVWCDLCIHPLEALGYYVILYSPAFVIPMPKASFLAYICVMGVAGVLDHSGVDVAVRARGCGVAVYDTKFHDLHHARFNVNYAFPFDFIDRACGTYAE 275
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|551674742|ref|XP_005840126.1| (sterol desaturase [Guillardia theta CCMP2712] >gi|428184290|gb|EKX53146.1| sterol desaturase [Guillardia theta CCMP2712]) HSP 1 Score: 166.777 bits (421), Expect = 1.527e-46 Identity = 102/294 (34.69%), Postives = 138/294 (46.94%), Query Frame = 0
Query: 11 AVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWW-----LLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKE 299
A AA +++ GY L+ AL V+Y R + WKIQ + + + GR+ +G+ H N++ A A VRG TR + W L G ++GWQS EYYWHRLMH Y+ FHK HH YK+P PFDDMYI P+EA+GYY ILYSP V P+HV F +Y+ ++G+CGILDHSGI +Y+T HD HH + + NF FPF ++D+LHGT+ +
Sbjct: 8 AGAAAIVV--GYHGLSCALQAVYYLRRRCSPQEWKIQPQRFVRLQSPACWSPFLGRWFGRR-------------------------------------EGKEEYHDFVCAMNVITAGCSAGFVVRSIVRG-------------STRLLFDWKAAGRLPGVVGTFCLAVGWQSVLEYYWHRLMHLPFFYKHFHKMHHSYKSPQPFDDMYIHPVEAVGYYCILYSPPFVFPLHVYGFVLYMAIMGVCGILDHSGIKWGFLGIYNTEDHDKHHEHFDCNFAFPFVWMDILHGTFAGD 249
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|612392345|ref|XP_007511693.1| (predicted protein [Bathycoccus prasinos] >gi|412988478|emb|CCO17814.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 162.54 bits (410), Expect = 9.255e-45 Identity = 111/298 (37.25%), Postives = 155/298 (52.01%), Query Frame = 0
Query: 7 LSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALV---LPMHVLSFAVYLTLLGLCGILDHSGIDVRLP---RVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRK 298
L+ + AF F+GY L+ + + FY+ + + SWKIQ N R S + V SI L ++ + A R +H FAT NL+++SLFAL+ E TVRG S LK + + + +G + +L QS EY WHRLMHY Y R HK+HH YK+P + D++I PLEA+GYY ILYSPA V LP SF +Y+ ++G+ G+LDHSG+D R P Y+ RFHD+HH + N N+ FPF + D + GT +K
Sbjct: 10 LNALSYCAFFAQFFGYFILSGLIEVWFYRKQSQQERSWKIQP------NGRNKWPGIKQSHKNNSFFVLSIPLLDFFFSSAGATTTASTT-------------QRHSKHKTFATLNLVVSSLFALVVTELTVRG-KSSLKES---TIMSTDTSACEIGIG--LFYALLLQSTLEYPWHRLMHYKYFYTRMHKYHHEYKSPVVYCDLFIHPLEAIGYYCILYSPAFVVKNLPKE--SFLLYMAIVGVFGVLDHSGVDFRFPWFLFSYEARFHDLHHKHFNVNYAFPFQWPDRIFGTLKK 280
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|303273318|ref|XP_003056020.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226462104|gb|EEH59396.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 160.999 bits (406), Expect = 1.362e-43 Identity = 108/328 (32.93%), Postives = 150/328 (45.73%), Query Frame = 0
Query: 11 AVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYA-----LANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVL-PMHVLSFAVYLTLLGLCGILDH------------------------------------SGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
+VA F GY+ L++ + +Y R + SWK Q R I + A G R+ YA L A +GR P+HA FA+ NL++++LFA TAE T RG S P + ++ +L WQS EYYWHR MH +Y+R HK+HH YK+P PFDD++I PLEA GY ILYS A V + + SF Y+ ++G+CGI+DH +G D+ + VY +RFHD+HH + N+ FPF F+D LHGT+
Sbjct: 39 SVAVFAAQLLGYVALSSIVEFAYYHRRRGDETSWKCQP---RAIRPGDGDGDGDAHRRGSSRK-----------------KYAWGLPLLDLFASSSSSSSSSSRGRHPKHATFASLNLLVSALFAGATAEATARGHSSLTSWTAPPLTSLVALVKIIL-----------WQSVLEYYWHRAMHAPRLYKRLHKYHHHYKSPRPFDDLFIHPLEAAGYCAILYSSAFVCGEVPIASFLAYMAIMGVCGIIDHCGVRFRVGFGFGFGERNGCGDGDGEKKSISKTITETTGADIGV-EVYASRFHDLHHERFDVNYAFPFAFMDALHGTF 334
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|669154826|ref|XP_008612975.1| (hypothetical protein SDRG_08854 [Saprolegnia diclina VS20] >gi|530735510|gb|EQC33752.1| hypothetical protein SDRG_08854 [Saprolegnia diclina VS20]) HSP 1 Score: 153.68 bits (387), Expect = 1.004e-41 Identity = 91/196 (46.43%), Postives = 120/196 (61.22%), Query Frame = 0
Query: 101 PWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
P P R + +AP H NL++AS+FA+L AEG +RG+ P L I +G + L +++ EYYWHR +H Y HK HH YK+P PFDDMY+ P+E + YY++LY P V MH+ SF +Y+ L+GL G+LDHSGI VR+P VYDTR H+IHH N N+GFPF + D LHGTY
Sbjct: 53 PSPSPRS-QPKAPDHTALTLFNLLVASVFAMLAAEGHMRGLSRMSFGPSPAPL----TIALEVGLACL------FENTVEYYWHRFLHTRAAYAHVHKVHHHYKSPRPFDDMYMHPVEGMAYYWVLYGPPYVFAMHMHSFCIYMALMGLFGLLDHSGIPVRIPLVYDTRDHEIHHRRVNYNYGFPFQYFDFLHGTY 237
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|1173956195|gb|OQS03047.1| (sterol desaturase [Thraustotheca clavata]) HSP 1 Score: 153.68 bits (387), Expect = 1.062e-41 Identity = 79/200 (39.50%), Postives = 115/200 (57.50%), Query Frame = 0
Query: 101 PWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES 300
P P R + +A H NL++AS+ A++ AE +RG+ P +L +LG+ V + +++ EYYWHR +H Y HK HH YK PFDDMY+ P E YY ILY P V MH+ SFA+Y+ L+ + G++DHSG+ ++ VY++ HD+HH+ N N+GFPF +LD++HGTY S
Sbjct: 50 PSPLPR-FQPKAENHEALTLLNLLMASVLAMIAAECHIRGLSYMDFDSLPSILT-------ILGQ---VSLAFVFENTIEYYWHRFLHLRWPYAIIHKVHHHYKKTRPFDDMYMHPFEGFAYYCILYGPPFVFHMHIGSFAIYMILMAVFGVMDHSGVQFQIKHVYNSTDHDVHHARFNFNYGFPFQYLDIVHGTYLSPS 238 The following BLAST results are available for this feature:
BLAST of EWM28613.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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