EWM28613.1, cds2123 (CDS) Nannochloropsis gaditana

Overview
NameEWM28613.1
Unique Namecds2123
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:949804..950457 -
Alignment locationCM002458.1:949592..949729 -
Alignment locationCM002458.1:949257..949367 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28613.1
Productc-4 sterol methyl oxidase
Orig transcript idgnl|cribi|Naga_100009g30.656.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:949804..950457 -
CM002458.1supercontigCM002458.1:949592..949729 -
CM002458.1supercontigCM002458.1:949257..949367 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006633fatty acid biosynthetic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0005506iron ion binding
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006694Fatty_acid_hydroxylase
Homology
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|585111031|gb|EWM28613.1| (c-4 sterol methyl oxidase [Nannochloropsis gaditana])

HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MSHLLPLSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES 300
            MSHLLPLSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES
Sbjct:    1 MSHLLPLSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES 300          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|813152323|ref|XP_012201229.1| (hypothetical protein SPRG_20243 [Saprolegnia parasitica CBS 223.65] >gi|641534124|gb|KDO28083.1| hypothetical protein SPRG_20243 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 183.341 bits (464), Expect = 2.447e-53
Identity = 95/215 (44.19%), Postives = 130/215 (60.47%), Query Frame = 0
Query:   82 STVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
            S V   + +     ++   P P  R  + +AP H+     NL++AS+FA++ AEG VRG+        P  L            +  V  +  +++  EYYWHR +H    Y R HK HH+YK+P PFDDMY+ P+E + YY++LY P  V  MH  SF+VY+ L+GL G+LDHSGI VR+P VYDTR H++HH   NAN+GFPF +LDVLHGTY
Sbjct:   27 SLVATGSFLRVLFLDIVFYPSPSPRA-QPQAPDHSALTLFNLLVASVFAMMAAEGHVRGLSRMTFGPSPPPLSM----------ALQVGLACVFENTVEYYWHRFLHTRAPYARVHKVHHYYKSPRPFDDMYMHPVEGMAYYWVLYGPPYVFAMHWQSFSVYMALMGLFGLLDHSGIAVRMPLVYDTRDHELHHRRVNANYGFPFQYLDVLHGTY 230          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|1173937170|gb|OQR88019.1| (sterol desaturase [Achlya hypogyna])

HSP 1 Score: 176.407 bits (446), Expect = 1.288e-50
Identity = 91/196 (46.43%), Postives = 122/196 (62.24%), Query Frame = 0
Query:  101 PWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
            P P  R  + +A  H   A  NL++AS+FA+ TAE   RG+        P    T  ++  +LG       +  +++  EYYWHR++H   +Y R HK HH YK P PFDDMY+ P E + YY++LY P  VLPMH+ SF VY+ L+G  G+LDHSG+ VR+P VYDTR HD+HH+    N+GFPF  LDV+HGTY
Sbjct:   53 PAPSPRA-QPKAADHNALALFNLLVASVFAMATAECHARGLSRMSFGPAP---STAMLLLQVLG-------ACVFENTIEYYWHRILHTRAMYTRIHKVHHHYKRPRPFDDMYMHPCEGMAYYWVLYGPPFVLPMHLHSFVVYMVLMGTFGLLDHSGVPVRIPFVYDTRDHDVHHTRVTYNYGFPFQLLDVVHGTY 237          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|255071383|ref|XP_002507773.1| (C-4 sterol methyl oxidase [Micromonas commoda] >gi|226523048|gb|ACO69031.1| C-4 sterol methyl oxidase [Micromonas commoda])

HSP 1 Score: 177.178 bits (448), Expect = 1.830e-50
Identity = 93/198 (46.97%), Postives = 125/198 (63.13%), Query Frame = 0
Query:  109 KGRAPQHALFATCNLMIASLFALLTAEGTVRGIG-------SQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLP-MHVLSFAVYLTLLGLCGILDHSGIDVRLP-RVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYR 297
             GR P HA +ATCNL+++SLFA  T E  + G G       S L     + + +   +  L+G     V ++ WQS  EYYWHR MH   VYR  HK HH YK+P P+DD++I P E+ GY  ILYSPA  +P + V +F +Y+T++G CG+LDH G+ +R P   YDT+FHD+HH   +ANF FPFP +D LHGT+R
Sbjct:   86 DGRHPSHACYATCNLVVSSLFAGATCEAYLAGDGKLFGLFRSTLVNASAYSVASAYSV--LVG----AVLAVTWQSVLEYYWHRAMHLPRVYRLLHKFHHHYKSPQPWDDLFIHPAESFGYCLILYSPAFCVPSLPVQAFLLYMTIMGACGVLDHCGVKMRWPFGAYDTQFHDVHHRSFDANFAFPFPTMDRLHGTHR 277          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|145356368|ref|XP_001422404.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144582646|gb|ABP00721.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 167.548 bits (423), Expect = 1.171e-46
Identity = 114/306 (37.25%), Postives = 151/306 (49.35%), Query Frame = 0
Query:    5 LPLSPYAVAAFLIIFWGYLTLNAALYIVFY-----QCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIG-SQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLP------RVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRK 298
            + +S  AV AF + F+GY+ L+ AL + FY     +   S T S KIQ H      KR  GT+    S+                         L  L     P   G       H LFA+ NL+ ++ FA +  E   RG   + L  G    L        +L   W  V ++ WQS  EY WHR MH    Y R+HK HH Y +P  + D+ I PLEALGYY ILYSPA V+PM   SF  Y+ ++G+ G+LDHSG+DV +        VYDT+FHD+HH+  N N+ FPF F+D   GTY +
Sbjct:    1 MGVSNTAVCAFGVQFFGYIALSTALELWFYVDWSGKRDSSATHSRKIQRH------KRACGTVRAHKSDP--------------------WGLPLYQLLCARKPRPDGRDECFEHHRLFASVNLLTSATFAGVVGETVNRGAPYTSLYGGSAFDLNCG-----ILACVWAFVKAVAWQSVAEYAWHRAMHSRFAYARWHKAHHAYASPCVWCDLCIHPLEALGYYVILYSPAFVIPMPKASFLAYICVMGVAGVLDHSGVDVAVRARGCGVAVYDTKFHDLHHARFNVNYAFPFDFIDRACGTYAE 275          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|551674742|ref|XP_005840126.1| (sterol desaturase [Guillardia theta CCMP2712] >gi|428184290|gb|EKX53146.1| sterol desaturase [Guillardia theta CCMP2712])

HSP 1 Score: 166.777 bits (421), Expect = 1.527e-46
Identity = 102/294 (34.69%), Postives = 138/294 (46.94%), Query Frame = 0
Query:   11 AVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWW-----LLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKE 299
            A AA +++  GY  L+ AL  V+Y  R    + WKIQ      +      + +     GR+                                     +G+   H      N++ A   A       VRG              TR +  W     L G       ++GWQS  EYYWHRLMH    Y+ FHK HH YK+P PFDDMYI P+EA+GYY ILYSP  V P+HV  F +Y+ ++G+CGILDHSGI      +Y+T  HD HH + + NF FPF ++D+LHGT+  +
Sbjct:    8 AGAAAIVV--GYHGLSCALQAVYYLRRRCSPQEWKIQPQRFVRLQSPACWSPFLGRWFGRR-------------------------------------EGKEEYHDFVCAMNVITAGCSAGFVVRSIVRG-------------STRLLFDWKAAGRLPGVVGTFCLAVGWQSVLEYYWHRLMHLPFFYKHFHKMHHSYKSPQPFDDMYIHPVEAVGYYCILYSPPFVFPLHVYGFVLYMAIMGVCGILDHSGIKWGFLGIYNTEDHDKHHEHFDCNFAFPFVWMDILHGTFAGD 249          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|612392345|ref|XP_007511693.1| (predicted protein [Bathycoccus prasinos] >gi|412988478|emb|CCO17814.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 162.54 bits (410), Expect = 9.255e-45
Identity = 111/298 (37.25%), Postives = 155/298 (52.01%), Query Frame = 0
Query:    7 LSPYAVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALV---LPMHVLSFAVYLTLLGLCGILDHSGIDVRLP---RVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRK 298
            L+  +  AF   F+GY  L+  + + FY+ +  +  SWKIQ       N R        S +     V SI  L    ++    + A                 R  +H  FAT NL+++SLFAL+  E TVRG  S LK      + + +     +G    +  +L  QS  EY WHRLMHY   Y R HK+HH YK+P  + D++I PLEA+GYY ILYSPA V   LP    SF +Y+ ++G+ G+LDHSG+D R P     Y+ RFHD+HH + N N+ FPF + D + GT +K
Sbjct:   10 LNALSYCAFFAQFFGYFILSGLIEVWFYRKQSQQERSWKIQP------NGRNKWPGIKQSHKNNSFFVLSIPLLDFFFSSAGATTTASTT-------------QRHSKHKTFATLNLVVSSLFALVVTELTVRG-KSSLKES---TIMSTDTSACEIGIG--LFYALLLQSTLEYPWHRLMHYKYFYTRMHKYHHEYKSPVVYCDLFIHPLEAIGYYCILYSPAFVVKNLPKE--SFLLYMAIVGVFGVLDHSGVDFRFPWFLFSYEARFHDLHHKHFNVNYAFPFQWPDRIFGTLKK 280          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|303273318|ref|XP_003056020.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226462104|gb|EEH59396.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 160.999 bits (406), Expect = 1.362e-43
Identity = 108/328 (32.93%), Postives = 150/328 (45.73%), Query Frame = 0
Query:   11 AVAAFLIIFWGYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYA-----LANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVL-PMHVLSFAVYLTLLGLCGILDH------------------------------------SGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
            +VA F     GY+ L++ +   +Y  R  +  SWK Q    R I   +      A   G  R+                  YA     L   A          +GR P+HA FA+ NL++++LFA  TAE T RG  S      P +     ++  +L           WQS  EYYWHR MH   +Y+R HK+HH YK+P PFDD++I PLEA GY  ILYS A V   + + SF  Y+ ++G+CGI+DH                                    +G D+ +  VY +RFHD+HH   + N+ FPF F+D LHGT+
Sbjct:   39 SVAVFAAQLLGYVALSSIVEFAYYHRRRGDETSWKCQP---RAIRPGDGDGDGDAHRRGSSRK-----------------KYAWGLPLLDLFASSSSSSSSSSRGRHPKHATFASLNLLVSALFAGATAEATARGHSSLTSWTAPPLTSLVALVKIIL-----------WQSVLEYYWHRAMHAPRLYKRLHKYHHHYKSPRPFDDLFIHPLEAAGYCAILYSSAFVCGEVPIASFLAYMAIMGVCGIIDHCGVRFRVGFGFGFGERNGCGDGDGEKKSISKTITETTGADIGV-EVYASRFHDLHHERFDVNYAFPFAFMDALHGTF 334          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|669154826|ref|XP_008612975.1| (hypothetical protein SDRG_08854 [Saprolegnia diclina VS20] >gi|530735510|gb|EQC33752.1| hypothetical protein SDRG_08854 [Saprolegnia diclina VS20])

HSP 1 Score: 153.68 bits (387), Expect = 1.004e-41
Identity = 91/196 (46.43%), Postives = 120/196 (61.22%), Query Frame = 0
Query:  101 PWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
            P P  R  + +AP H      NL++AS+FA+L AEG +RG+        P  L     I   +G + L      +++  EYYWHR +H    Y   HK HH YK+P PFDDMY+ P+E + YY++LY P  V  MH+ SF +Y+ L+GL G+LDHSGI VR+P VYDTR H+IHH   N N+GFPF + D LHGTY
Sbjct:   53 PSPSPRS-QPKAPDHTALTLFNLLVASVFAMLAAEGHMRGLSRMSFGPSPAPL----TIALEVGLACL------FENTVEYYWHRFLHTRAAYAHVHKVHHHYKSPRPFDDMYMHPVEGMAYYWVLYGPPYVFAMHMHSFCIYMALMGLFGLLDHSGIPVRIPLVYDTRDHEIHHRRVNYNYGFPFQYFDFLHGTY 237          
BLAST of EWM28613.1 vs. NCBI_GenBank
Match: gi|1173956195|gb|OQS03047.1| (sterol desaturase [Thraustotheca clavata])

HSP 1 Score: 153.68 bits (387), Expect = 1.062e-41
Identity = 79/200 (39.50%), Postives = 115/200 (57.50%), Query Frame = 0
Query:  101 PWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWLLGESWLVVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTYRKES 300
            P P  R  + +A  H      NL++AS+ A++ AE  +RG+        P +L        +LG+   V  +  +++  EYYWHR +H    Y   HK HH YK   PFDDMY+ P E   YY ILY P  V  MH+ SFA+Y+ L+ + G++DHSG+  ++  VY++  HD+HH+  N N+GFPF +LD++HGTY   S
Sbjct:   50 PSPLPR-FQPKAENHEALTLLNLLMASVLAMIAAECHIRGLSYMDFDSLPSILT-------ILGQ---VSLAFVFENTIEYYWHRFLHLRWPYAIIHKVHHHYKKTRPFDDMYMHPFEGFAYYCILYGPPFVFHMHIGSFAIYMILMAVFGVMDHSGVQFQIKHVYNSTDHDVHHARFNFNYGFPFQYLDIVHGTYLSPS 238          
The following BLAST results are available for this feature:
BLAST of EWM28613.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111031|gb|EWM28613.1|0.000e+0100.00c-4 sterol methyl oxidase [Nannochloropsis gaditan... [more]
gi|813152323|ref|XP_012201229.1|2.447e-5344.19hypothetical protein SPRG_20243 [Saprolegnia paras... [more]
gi|1173937170|gb|OQR88019.1|1.288e-5046.43sterol desaturase [Achlya hypogyna][more]
gi|255071383|ref|XP_002507773.1|1.830e-5046.97C-4 sterol methyl oxidase [Micromonas commoda] >gi... [more]
gi|145356368|ref|XP_001422404.1|1.171e-4637.25predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|551674742|ref|XP_005840126.1|1.527e-4634.69sterol desaturase [Guillardia theta CCMP2712] >gi|... [more]
gi|612392345|ref|XP_007511693.1|9.255e-4537.25predicted protein [Bathycoccus prasinos] >gi|41298... [more]
gi|303273318|ref|XP_003056020.1|1.362e-4332.93predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|669154826|ref|XP_008612975.1|1.004e-4146.43hypothetical protein SDRG_08854 [Saprolegnia dicli... [more]
gi|1173956195|gb|OQS03047.1|1.062e-4139.50sterol desaturase [Thraustotheca clavata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2131rna2131Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications