rna2130, rna2130 (mRNA) Nannochloropsis gaditana

Overview
Namerna2130
Unique Namerna2130
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length210
Alignment locationCM002458.1:947394..948719 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g31.651.mrna
Orig protein idgnl|cribi|Naga_100009g31.651
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:947394..948719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g31gene2034Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28608.1cds2122Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2130rna2130-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2130 ID=rna2130|Name=rna2130|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGTGCGGCAACAATATCTTAGAATTTAGCGCTCATGGCATACATTGGAA
TATACAACTTAACGTTCATAAAGTGACAAACCAAAAGTGTTATCTGTGTA
CTAAGGGTGACCTCAAGCATTGCTCTCGATGCATTTTTTGGGAAGCGCTT
TTCGAGCTTCTGCTGAGGAGGAATACCCAACCTGTATGTGACTTTGCATG
TCTTTGTTAA
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protein sequence of rna2130

>rna2130-protein ID=rna2130-protein|Name=rna2130|organism=Nannochloropsis gaditana|type=polypeptide|length=441bp
MTSHLHDHTQSRNRVTNGDVNDKRLNQDGAGQESTEQAHHQQHGAHKDSD
GRPRLIKIVLTGGPCGGKTTSLARLSEFFRTHGFRVFTVPEAATTLWSNG
VALADILGSNETQYWFQDAVLDFQIHLEDGMERIARSLGRPSVILCDRGT
LDGAAYVSKELWEELVKKKGLELLSIREGRYDAIFHLVTAAMGAEPFYSL
LTNVTRTESPGFAREVDMKTQGVWNGHPRHYVIDNSTDFEGKLARVQDEA
ARLVGLPQLPRGADRWFLRKKPKPDSFTVPFEKTQVRKVYLMNVGRPLPD
GRKVSVEYNYVEERSQDGSVAYAHTSKQRLDDGHEAELKRIIDAREFYSR
STTMADPSRKEVFQTRYSFLWAQQAFVVIHHHSDAKTKFGPELFTLRRQA
KGGIPEFPPFLDVGEHIEDEDGLFPFPTRPSPTKSNTTSMK
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mRNA from alignment at CM002458.1:947394..948719-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2130 ID=rna2130|Name=rna2130|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp|location=Sequence derived from alignment at CM002458.1:947394..948719- (Nannochloropsis gaditana)
ATGACCAGCCATCTTCACGATCACACCCAGTCACGAAACCGTGTCACGAA
TGGCGATGTAAATGACAAACGGCTTAACCAAGATGGTGCTGGACAAGAAA
GCACGGAACAAGCTCACCATCAGCAGCATGGAGCCCATAAAGATAGCGAC
GGACGACCCCGACTCATAAAGATTGTCCTCACTGGGGGACCCTGCGGTGG
TAAAACCACGTCGCTTGCCCGCTTGTCGGAATTCTTCCGCACGCACGGCT
TTCGTGTGTTTACCGTCCCTGAAGCTGCGACGACCCTGTGGTCGAACGGC
GTTGCACTCGCGGATATCTTGGGTTCGAATGAGACCCAGTATTGGTTCCA
GGATGCAGTGCTTGATTTTCAGATCCATCTCGAAGATGGAATGGAGCGAA
TAGCCCGCTCTTTAGGAAGGCCATCGGTAATACTGTGTGATCGGGGCACT
CTGGATGGCGCGGCCTACGTCAGCAAGGAACTTTGGGAAGAATTAGTTAA
GAAGAAAGGCCTCGAGCTTTTGAGCATTCGTGAAGGTAGATATGATGCAA
TCTTCCATTTGGTGACTGCGGCAATGGGTGCGGAACCTTTCTACTCTTTG
CTGACCAATGTGACCCGCACGGAGTCTCCTGGGTTCGCGCGAGAAGTAGA
CATGAAGACGCAGGGTGTGTGGAACGGGCACCCTCGGCATTACGTCATTG
ACAATTCTACTGACTTTGAGGGGAAACTCGCTCGGGTCCAAGATGAAGCG
GCTCGCCTGGTGGGACTACCACAGCTGCCTCGTGGTGCGGATAGGTGGTT
TTTGCGAAAAAAGCCAAAGCCGGATTCTTTTACCGTGCCTTTTGAAAAAA
CCCAGGTCCGTAAGGTGTATTTGATGAACGTTGGCCGGCCTCTGCCAGAC
GGCAGGAAAGTAAGCGTTGAGTACAATTACGTTGAGGAGAGGTCTCAAGA
TGGATCTGTGGCCTATGCGCACACCAGCAAGCAACGCTTGGATGATGGAC
ACGAGGCAGAATTGAAACGAATCATCGACGCACGCGAGTTTTACTCTCGC
AGTACCACAATGGCTGATCCATCCAGGAAGGAGGTCTTTCAAACACGGTA
TTCATTTTTATGGGCACAACAAGCGTTTGTGGTAATCCACCATCATTCAG
ACGCCAAGACAAAGTTTGGACCTGAACTTTTCACGTTACGCCGGCAGGCA
AAAGGTGGAATCCCAGAGTTCCCGCCTTTTCTGGACGTTGGAGAGCACAT
CGAGGATGAAGATGGACTCTTTCCTTTTCCCACGCGGCCATCACCGACAA
AGAGTAATACAACATCAATGAAATAG
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Coding sequence (CDS) from alignment at CM002458.1:947394..948719-

>rna2130 ID=rna2130|Name=rna2130|organism=Nannochloropsis gaditana|type=CDS|length=1326bp|location=Sequence derived from alignment at CM002458.1:947394..948719- (Nannochloropsis gaditana)
ATGACCAGCCATCTTCACGATCACACCCAGTCACGAAACCGTGTCACGAA
TGGCGATGTAAATGACAAACGGCTTAACCAAGATGGTGCTGGACAAGAAA
GCACGGAACAAGCTCACCATCAGCAGCATGGAGCCCATAAAGATAGCGAC
GGACGACCCCGACTCATAAAGATTGTCCTCACTGGGGGACCCTGCGGTGG
TAAAACCACGTCGCTTGCCCGCTTGTCGGAATTCTTCCGCACGCACGGCT
TTCGTGTGTTTACCGTCCCTGAAGCTGCGACGACCCTGTGGTCGAACGGC
GTTGCACTCGCGGATATCTTGGGTTCGAATGAGACCCAGTATTGGTTCCA
GGATGCAGTGCTTGATTTTCAGATCCATCTCGAAGATGGAATGGAGCGAA
TAGCCCGCTCTTTAGGAAGGCCATCGGTAATACTGTGTGATCGGGGCACT
CTGGATGGCGCGGCCTACGTCAGCAAGGAACTTTGGGAAGAATTAGTTAA
GAAGAAAGGCCTCGAGCTTTTGAGCATTCGTGAAGGTAGATATGATGCAA
TCTTCCATTTGGTGACTGCGGCAATGGGTGCGGAACCTTTCTACTCTTTG
CTGACCAATGTGACCCGCACGGAGTCTCCTGGGTTCGCGCGAGAAGTAGA
CATGAAGACGCAGGGTGTGTGGAACGGGCACCCTCGGCATTACGTCATTG
ACAATTCTACTGACTTTGAGGGGAAACTCGCTCGGGTCCAAGATGAAGCG
GCTCGCCTGGTGGGACTACCACAGCTGCCTCGTGGTGCGGATAGGTGGTT
TTTGCGAAAAAAGCCAAAGCCGGATTCTTTTACCGTGCCTTTTGAAAAAA
CCCAGGTCCGTAAGGTGTATTTGATGAACGTTGGCCGGCCTCTGCCAGAC
GGCAGGAAAGTAAGCGTTGAGTACAATTACGTTGAGGAGAGGTCTCAAGA
TGGATCTGTGGCCTATGCGCACACCAGCAAGCAACGCTTGGATGATGGAC
ACGAGGCAGAATTGAAACGAATCATCGACGCACGCGAGTTTTACTCTCGC
AGTACCACAATGGCTGATCCATCCAGGAAGGAGGTCTTTCAAACACGGTA
TTCATTTTTATGGGCACAACAAGCGTTTGTGGTAATCCACCATCATTCAG
ACGCCAAGACAAAGTTTGGACCTGAACTTTTCACGTTACGCCGGCAGGCA
AAAGGTGGAATCCCAGAGTTCCCGCCTTTTCTGGACGTTGGAGAGCACAT
CGAGGATGAAGATGGACTCTTTCCTTTTCCCACGCGGCCATCACCGACAA
AGAGTAATACAACATCAATGAAATAG
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Synonyms
Publications