rna2127, rna2127 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2127
Unique Name	rna2127
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3692
Alignment location	CM002458.1:941434..943815 +

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic translation initiation factor 2a
Orig transcript id	gnl\|cribi\|Naga_100009g34.615.mrna
Orig protein id	gnl\|cribi\|Naga_100009g34.615
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:941434..943815 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g34	gene2031	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2127	rna2127-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28572.1	cds2119	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:941434..943815+
coding sequence from alignment at CM002458.1:941434..943815+

mRNA sequence

>rna2127 ID=rna2127|Name=rna2127|organism=Nannochloropsis gaditana|type=mRNA|length=3692bp
CATTATTTTCCAGGATACATAGAGTTATGCAAGCAATACTTATTTATTTT
TGAGTCGTGCTTTATCATTATCACAGGAGTCGAAAGGAGAAGTTTCCGCC
AAGCTGCGAGAGAGGACCTTCCAGCTACATGAGAAATGGTCATGCACTCG
ACCTCCTCCCCGCCTGCGCGGGAGGTCGCCTCTGCTTCCCTCTTGTGGAC
TATGAACGCGGATGGGTCGCGGGACATGGAAGAGGAGGAAGAAGATGAGG
TGGCTAGTCCACAGACCCTATTGCGCCGTATTCTTTCATGTGATTCCTGT
GATATGACCCTCGGCTTTGAGTCCCTCTCTTTCAACCAGCTCTTGAGTCT
GCAGGCAAGCAATGAATTGCGAGACTTTGCCGATGAGTTTGATTCTGTAA
CATACGCCTTATTCTTTCAACTCTTATGTGCTGCCTGGAAAGATGGACGA
CCAGATGTCGTATGCATCACAGAGGGCCTTCTCTCCTACGTGATGGCCAT
GCCAGAGTACAATTCCCACACTGCCTCGGAGGCAGTCTCTCCTGAGCTCC
TGCGTTCCGTCATCTCCCGTTTTGACGGAGCACCCGAAAAGGAACACGCC
TTCCTGCGCGATTTTTTGCATTTATTGTACCGAGATGCTTTGAAATTCCG
GCCGTTGCTTCGTGCACTGCTCGCACGCTTTCTGGCCGCCTTCATTCACA
CCGGGAAGAAAACGATGGCCGTGGCGCCGGTGCTGGAGGTCCTCGGCCAT
GTCATCAAGGGCTTTGCCTCTCCTCTCACCAGCATTCATCGCCGCTTATT
TGTGTCCCTTCTCCTCCCCCTCCACGAAAACAACGACATGTACGAATGGC
GGGACCAGCTCCCCGTCATCCAGCTCTATCACGAGCCGCTCGTTTTCTGC
CTCACACAGTATCTGGAGAGAGACCGCGGGTCTTTCGCCCTTCCCATCTT
AAGGCAGCTCTTGAAAAGCTGGCCGGAGAAATTTGAGAGCAATTCGGCCA
AGGAAGTTCTTTGCCTGCACGAATTGGGCGCCCTCCTCCATTATTTCTCC
GATCACGACTTCGCCGAGGCCCTTCCCCTTCTGCTCCCACGCTTATCGCA
CTGCCTCGCCTCCGATCACAGCCGTTGTGTGGAAAAGGCACTGATTCTCT
GGAAGGATGAGGCGATGGTTGGCTTTACTATGCGATTTGCCTCTCAAGTG
ATCCGCGCATTGTTCCGGAGCGTGTACCGCGACGGCGAGAAACACTGGAA
CGTGACAGTGAACAAGATGAGGGTCTTAGTCTTAAAGACATTCCAAGAGG
CCGACGGGGACGTGTTCGCGGAGGTGGCAAGCAGAGAGGGTAGTAGGAGG
AGACGAGAGGACGACGGGCGGGACAAAGGCGAGGGAGTAGGGAAGAAAGC
GACTCCCGCAGTGTCGTCCAGCGCACACATGCCTCCTCCGCCCCGCGCCC
CGGCCTCCCTGTACGCGCAAGACGCAGCAGGATGGAAACCTCCACGTCGC
ACATCTGCCACCGTCCCTGGAGGACAGCGGCGGCAGCCCCCGGTGACTAT
CACGGGAATGGCGCCCTGGACCAAGCGCGAGGGCGTGGCCTCTGATCGAC
TGCGGGGGGGTCTGGAGCATTGGGGGCGTCAACAGCAGCCGCAGCCTCCG
GTGGTCGTCACAGGCGTGGCTCCCTGGGCGATGGACTCCAATGTCGGGTA
CCTCGGGCCTGGGAGGACGGTCGAGGGCGGCGGCAAGAGCAGGAATATGG
GCCACCGAAGATTGTCGGCACAGCCACCCCCTCGGACCAGCTTGCCCCCC
CCGTGGAGCAGCCAGTCCGACAGCCCCCTGTCGCAGCCGATGGAAGAGTC
TGACGGAAGACGGGGGCAAATTGACGCAGTTTTGGAAGAGGAGGAAGGAG
AGGCAGAAGATGGGTTGAGGGAGGTGGAGGGGGAGGTAGGAATGGGGCGG
GGAGGAAGGCTTGCGTCAGAGGGGGGGGGCCCTAGGACTTCGCAGGCCAC
CACGAACACGCGCAGCAAGCCGATAGATCCAGACGAATCCACTGCACGGG
GCTCGACAATCCACGCCGCCCTCGAAGGCGGGAGGGAGGGCCTCGAGCGT
GTGCTGGGCTTTATGGAGGAGTTCCGACCGGCCTCGTCCTCGGAGGGGCA
AGCCTGGTACAAGCTGCAGTTGGAGCCCACGCCCACGTTGCTCCCAGAGA
TGCGGTTCCACGACCTGGTTTTCGGCCATGACTTGGGATCGGGTGCCTTT
AGCACGGTGCGGTACGCCCGGCACGTGACCAAGGACAAGACGAGGAGCGA
CTGGGCGGAGTTCGCCGTGAAAGTCATTGACACCGCGCGCCTGGTCGAGC
TGGGGTATGAAGCATGTGTGAACCGAGAAATCGCGGTCTTGCGCCTCTTG
TCCCACCCCGGGATTGCTCGGATGGTTTCTTCCTTCCGATGGCGCGACGG
CGTGTATCTGGTCTTGGAGTACGCGAGTAAAGGTGACTTGCACTCCTACT
TAGTCGCCCGCGGCTCCCTGGACGAGGACTCGGTGCGTTTCGTGGCAGGG
GAGGTGGTGGCCGCCCTGTGCTCCGTGCATGAGGCCGGCTTTGTCTACGG
TGATTTGAAGCCGGAGAACGTGGTGATCACCGAATCGGGACACGTGAAAG
TCACCGACTTTGGTGCGTGTCGCCCTCTCACGCCAGCGGCTCGGGCTACT
TTGCGCGCCAGTCGTCACGCGATTCAGCAGCTCCGGGATGGAGACTGGCG
TTCGGCAAAAGGCTTGGTTGCGGCGGGAGGAGAGAGGACTGGCATGGGGA
ACGAAGTAGGTCCACGGGCAGTGCAGCCACCCGGGGGAGGCGCGGAAGGC
AGGGGCAGAGGCCCTGAAGGAGGCCAGGGTAGCCCCCCGAGGAGCCCCGA
GGAGCATGGGCAGGACGGGGGGGGGAGAAGGAAGAGGAGGATGGGCGGAT
TGAGGGTACCTTTGCCTACCTTCCTCCCGAGGTGGTCCGGGACGGGGCGG
TGCCTGACGCGCTGAGTGACTCGTGGGCCTTGGGCTGCTTGCTCTTCCAA
CTGTTGATGGGTCGCCCACCCGTGTTCACTGAGCACGATACAAGCCCGGA
TACGGACATCAGAGAGCGCGTTGTACGCTTTGCAGAAGGGCAAAAGGTTA
ATGGAGACTTCGTCTTTGGAGAAGCTTTCCTGAACACAAGCAGGACTGCC
CTTACTCTCAGCGACGACGTAAAAAGCCTGATAAAATCCCTGCTTAAAGT
TGAGCGAAACGAGCGCATCCCCGTCGAAGCCGCCGCCAAGCATGCTTTTT
TCACAAATCATGGTGTAAATGTGCATTTACTGTACCAAGGACCTGCAGTT
CAATTAGTTCACGGGGCAGCCGGGCCCACGCCAGATGCAGCATGGAATCG
ACGCCAATTTTCAGCAATCTGGGCGCCTTTACCTGGGAAGTATAATTTTG
TTTCCAAATCGTACACACTGGGTCCTATTGGAGAGACAGACATTGAGCGT
GACTCACTATTCTGTTACGAAAACAATAAGCTTTTGGAGGAAGAAAAAGG
AAAGACGCCTGAAAGGTGTAACATCGGTCTGCCCCTGCCACCCAAGAGAC
CTGACGGAAGGTAAAGATATGAGATACCTTAGTAAGCACGCATGAACGTA
TTTTCAAATTGTACAAAGAATTTACTCTCTGTGATTTCATGC

protein sequence of rna2127

>rna2127-protein ID=rna2127-protein|Name=rna2127|organism=Nannochloropsis gaditana|type=polypeptide|length=646bp
MTAPPQAVKILLRSKAGVHLQELTTGENGLPVLTPAPDEALGKPVPGDLT
EFCGDGSAVAIVTSTPTKSLRVVDVETGNVRWTVEGRNIQALSFSPQGTF
LLTWERLASGGAPQPGSSTATSQSGSTAHTTPETATAGIKGNLLVWRSEN
GVLVAGFTQKTFRKPEWPTLQWTPDESLCFRATATDVHVYPGQEPGTASP
EKFAVSGGGMASLRVSPNASPPHRVACFFPEAKGKPASVRIYQYPHFGVA
LASKSFFKAQEAHLRWSPNGLAVLIHTHTDVDTSGVSYYGSTGLYLLHAD
GKYEVTVPLPKEGPISDAKWAPAGPAQFIVLAGRMPAAATLYNIKAEPIF
EFGQAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCS
VGYGWSPCGRYFMTATLAPRMNVDNAVKLFKYNGAGPLHKAEFEDATLFD
ASFRPAAGGVFPDRPATPPRKGMEGDSSTTVPPPSKPKTAYRPPGSTGAL
AALIRAERDALSGPKKVAAGKGGGNSAYGAPGQPYIPGLAPAGATTNGES
KNTARNKARKEKKKAAEQALRAQAEAEAERIRKEQAAAALVAAEDPVKRR
KAVQKKLKQIEELKARAMGGEKLNDDQQNKLATEASLVEELAKLEV

mRNA from alignment at CM002458.1:941434..943815+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2127 ID=rna2127|Name=rna2127|organism=Nannochloropsis gaditana|type=mRNA|length=2382bp|location=Sequence derived from alignment at CM002458.1:941434..943815+ (Nannochloropsis gaditana)
cgacGCGACAGGTGACCGCAAACAGCACACACGTGCGGAGACAGTCTCAT
TGTCATTGTGTTTGCCTCTGTAGGAGCAGCTTAAATTCGTGGGCACGGGT
CAGTAAAGGACTTTCGGTGATATTTTCGTTTCCCCCTGAGAACGTTGTGG
ACAGTGTCCATGTTAccctcttcgcttcctcgATCTGACCGCTTAATAAT
GTACTAAATTGCATCAAAACTTACCGTGCAGCTTGTCTATGACCGCTCCG
CCTCAAGCAGTCAAAATTTTACTGCGTAGTAAGGCTGGGGTGCACCTTCA
GGAGCTTACCACTGGAGAAAATGGTCTACCCGTCCTCACACCAGCACCCG
ACGAAGCCCTTGGCAAGCCTGTGCCTGGGGACTTGACTGAGTTTTGCGGG
GATGGCAGTGCCGTGGCTATAGTAACCTCGACTCCAACTAAAAGTTTACG
AGTTGTTGACGTGGAGACGGGAAACGTGCGGTGGACCGTCGAAGGACGGA
ATATTCAAGCACtatccttttccccccagggaaccttcctcctcacctgg
GAGCGTCTGGCTTCAGGGGGCGCACCGCAGCCAGGCAGTAGTACTGCAAC
CAGTCAAAGTGGCAGCACGGCACACACTACTCCTGAGACTGCCACTGCCG
GTATTAAGGGTAATTTACTGGTGTGGCGTTCAGAAAACGGTGTACTAGTG
GCCGGTTTCACGCAAAAAACCTTCCGTAAACCTGAATGGCCCACTTTGCA
ATGGACACCGGATGAGAGCCTGTGTTTCCGCGCCACTGCCACTGATGTTC
ATGTCTATCCTGGGCAAGAGCCAGGGACGGCTTCTCCAGAAAAGTTTGCG
GTgtccgggggagggatggcttCCCTCCGCGTCAGTCCCAACGCCTCCCC
GCCTCATCGTGTGGCCTGTTTCTTTCCGGAAGCCAAAGGTAAACCCGCCT
CCGTCCGCATCTATCAATATCCGCATTTTGGGGTGGCTTTAGCGTCCAAA
AGCTTCTTCAAGGCCCAAGAAGCCCACCTGCGCTGGTCTCCCAACGGGCT
AGCCGTCCTGATCCACACACACACGGATGTGGACACCTCGGGCGTGTCTT
ACTATGGATCTACAGGCCTCTACCTGCTACATGCGGATGGAAAATACGAG
GTCACGGTGCCTTTACCCAAGGAGGGCCCGATCTCTGATGCGAAGTGGGC
GCCAGCGGGGCCGGCGCAATTTATTGTCTTGGCCGGGCGGATGCCGGCAG
CCGCCACGTTGTACAACATCAAGGCGGAGCCAATCTTTGAATTCGGTCAA
GCACATCGCAACACCGTCAGTTTCAGCCCGCACGGACGTTTCGTTGTGCT
AGCAGGGTTTGGTAATTTGGCCGGCGAAATGGACTTCTGGGACCGGAACA
AGCAGAAGCTCATGGGCAGGAACACGTCACATTGCAGTGTGGGCTATGGA
TGGAGTCCCTGCGGTCGTTACTTTATGACGGCCACTTTGGCGCCCCGTAT
GAATGTGGATAACGCCGTGAAGCTCTTCAAGTACAATGGAGCAGGGCCTC
TGCACAAGGCAGAATTTGAGGATGCGACTTTGTTCGACGCCAGCTTCAGG
CCAGCGGCAGGGGGAGTGTTCCCCGACCGACCCGCGACACCGCCTCgcaa
gggaatggagggggatAGCTCAACGACGGTGCCACCACCTTCGAAGCCAA
AAACTGCGTATCGACCACCGGGCTCCACTGGGGCACTGGCTGCGTTGATT
CGTGCGGAGCGCGATGCCTTGTCGGGACCGAAAAAAGTGGCCGCAGGGAA
AGGTGGAGGTAATAGTGCATATGGTGCACCCGGACAGCCTTACATACCCG
GCCTAGCGCCAGCGGGAGCGACAACAAATGGAGAGAGCAAAAATACTGCG
AGAAACAAggcgcggaaggagaagaaaaaggcagcTGAGCAAGCATTGAG
GGCACAGGCCGAAGCTGAGGCGGAGAGGATAAGGAAAGAACAAGCAGCTG
CAGCTCTTGTAGCAGCGGAAGATCCAGtcaagagaaggaaagctgtCCAG
AAGAAGCTCAAGCAGATAGAGGAATTGAAGGCCCGGGCAATGGGTGGGGA
AAAGTTGAACGATGATCAGCAAAACAAGTTGGCTACAGAGGCGTCTCTAG
TCGAAGAGCTTGCCAAGCTCGAGGTATAATGGCGGTGGTAATCGCGCCAG
TAGAAAAAAGTAATCAAAAGGGTACCAAGGAATTAATTGAATAGGTTTTA
CTTGGCGTTATTATTTTCTAAGCTATGATCTTTGACTTGAACAAAAGCGG
taaaaaggcaggaaagaaagggtctCTAGAGGCACGGCAAACACGGCGAA
ATTACTCAGCTGGTGGACAATCAGAAATTTGA

Coding sequence (CDS) from alignment at CM002458.1:941434..943815+

>rna2127 ID=rna2127|Name=rna2127|organism=Nannochloropsis gaditana|type=CDS|length=1941bp|location=Sequence derived from alignment at CM002458.1:941434..943815+ (Nannochloropsis gaditana)
ATGACCGCTCCGCCTCAAGCAGTCAAAATTTTACTGCGTAGTAAGGCTGG
GGTGCACCTTCAGGAGCTTACCACTGGAGAAAATGGTCTACCCGTCCTCA
CACCAGCACCCGACGAAGCCCTTGGCAAGCCTGTGCCTGGGGACTTGACT
GAGTTTTGCGGGGATGGCAGTGCCGTGGCTATAGTAACCTCGACTCCAAC
TAAAAGTTTACGAGTTGTTGACGTGGAGACGGGAAACGTGCGGTGGACCG
TCGAAGGACGGAATATTCAAGCACtatccttttccccccagggaaccttc
ctcctcacctggGAGCGTCTGGCTTCAGGGGGCGCACCGCAGCCAGGCAG
TAGTACTGCAACCAGTCAAAGTGGCAGCACGGCACACACTACTCCTGAGA
CTGCCACTGCCGGTATTAAGGGTAATTTACTGGTGTGGCGTTCAGAAAAC
GGTGTACTAGTGGCCGGTTTCACGCAAAAAACCTTCCGTAAACCTGAATG
GCCCACTTTGCAATGGACACCGGATGAGAGCCTGTGTTTCCGCGCCACTG
CCACTGATGTTCATGTCTATCCTGGGCAAGAGCCAGGGACGGCTTCTCCA
GAAAAGTTTGCGGTgtccgggggagggatggcttCCCTCCGCGTCAGTCC
CAACGCCTCCCCGCCTCATCGTGTGGCCTGTTTCTTTCCGGAAGCCAAAG
GTAAACCCGCCTCCGTCCGCATCTATCAATATCCGCATTTTGGGGTGGCT
TTAGCGTCCAAAAGCTTCTTCAAGGCCCAAGAAGCCCACCTGCGCTGGTC
TCCCAACGGGCTAGCCGTCCTGATCCACACACACACGGATGTGGACACCT
CGGGCGTGTCTTACTATGGATCTACAGGCCTCTACCTGCTACATGCGGAT
GGAAAATACGAGGTCACGGTGCCTTTACCCAAGGAGGGCCCGATCTCTGA
TGCGAAGTGGGCGCCAGCGGGGCCGGCGCAATTTATTGTCTTGGCCGGGC
GGATGCCGGCAGCCGCCACGTTGTACAACATCAAGGCGGAGCCAATCTTT
GAATTCGGTCAAGCACATCGCAACACCGTCAGTTTCAGCCCGCACGGACG
TTTCGTTGTGCTAGCAGGGTTTGGTAATTTGGCCGGCGAAATGGACTTCT
GGGACCGGAACAAGCAGAAGCTCATGGGCAGGAACACGTCACATTGCAGT
GTGGGCTATGGATGGAGTCCCTGCGGTCGTTACTTTATGACGGCCACTTT
GGCGCCCCGTATGAATGTGGATAACGCCGTGAAGCTCTTCAAGTACAATG
GAGCAGGGCCTCTGCACAAGGCAGAATTTGAGGATGCGACTTTGTTCGAC
GCCAGCTTCAGGCCAGCGGCAGGGGGAGTGTTCCCCGACCGACCCGCGAC
ACCGCCTCgcaagggaatggagggggatAGCTCAACGACGGTGCCACCAC
CTTCGAAGCCAAAAACTGCGTATCGACCACCGGGCTCCACTGGGGCACTG
GCTGCGTTGATTCGTGCGGAGCGCGATGCCTTGTCGGGACCGAAAAAAGT
GGCCGCAGGGAAAGGTGGAGGTAATAGTGCATATGGTGCACCCGGACAGC
CTTACATACCCGGCCTAGCGCCAGCGGGAGCGACAACAAATGGAGAGAGC
AAAAATACTGCGAGAAACAAggcgcggaaggagaagaaaaaggcagcTGA
GCAAGCATTGAGGGCACAGGCCGAAGCTGAGGCGGAGAGGATAAGGAAAG
AACAAGCAGCTGCAGCTCTTGTAGCAGCGGAAGATCCAGtcaagagaagg
aaagctgtCCAGAAGAAGCTCAAGCAGATAGAGGAATTGAAGGCCCGGGC
AATGGGTGGGGAAAAGTTGAACGATGATCAGCAAAACAAGTTGGCTACAG
AGGCGTCTCTAGTCGAAGAGCTTGCCAAGCTCGAGGTATAA

Synonyms

Publications