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Properties
| Property Name | Value |
|---|
| Product | 3 -5 exoribonuclease csl4 |
| Orig transcript id | gnl|cribi|Naga_100009g36.577.mrna |
| Orig protein id | gnl|cribi|Naga_100009g36.577 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:936136..937179 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2125 ID=rna2125|Name=rna2125|organism=Nannochloropsis gaditana|type=mRNA|length=873bp
ATGCTCTCTCCGTGCAGATCATCGATTGGCCTTTTCATGATCCTTGCCAC
TTTTATGCCGACTGCTGCCTTGTCTGCATTCATTCCTTCGTCGCCGACAT
CTATCAGCTCCATTGCGACCACGACGACCCTAAGATCCCGCAGCAACACG
GCGAGGCCAAGCATAAGCCTTGACTCCTTCTTTGGAAGGCGTCCACCGCG
ATCCACCACCACCACTGTTCCGTCTCCGCCCGCCACATCGATCATAATAT
CAGAAGTCTCTCGGCAAGACTTACGCCTAGCGGCATCGGTGTGCATTGAA
AGTTTTTTCGGCACGGCCGACCGCCTCAACCCTGTACGCTCCATGCAACT
TGCCACTCTCCTCGACGAGCAATGCGCGGACCTGCGCTCTCGCTTCGGAG
GTCGTGCGGTGGGAGGGTCCCTATATCTGCAGGCGGTGGACGCAGACGGG
GCAATGGTGGGATTTGTAGAGGTGGGAATCACACAATCCTTGAAATACGG
CATGGAGCAATACGGCGTGCCCGTGCGCGATGAGCGACCGTACCTGGCCA
ATCTATCGGTGCGACCAGCCTTGCGTCGGCAAGGTGTCGGTCGCCGGCTA
GTGCACGCATGCGAGGAGATGGTTCGAAGCTGGGGCTATGATGAGCTGAT
TCTGCAAGTGGAAGACAGCAACCAGCAGGCCCGCAATCTGTACCGAGACA
TGGGCTACATCGATTTATACACGGACGCGACGGGGCGTAAATATGAATTG
AGTGGAATGAGCATAAAGAACGTTAGGATCAACAAGGTAACGTTGCGGAA
GGCCTTGGTCCCTTCTGCGGCCAAGAATCCTTTTGCGGCGCTTTGGGGCC
AGCTCTCCATTTCGCAGGGGTAG back to topprotein sequence of rna2125 >rna2125-protein ID=rna2125-protein|Name=rna2125|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQI
LQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQA
YVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVV
SLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMD
PLTKATEPRKVAKPSAKTD back to topmRNA from alignment at CM002458.1:936136..937179- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2125 ID=rna2125|Name=rna2125|organism=Nannochloropsis gaditana|type=mRNA|length=1044bp|location=Sequence derived from alignment at CM002458.1:936136..937179- (Nannochloropsis gaditana)
ATGGATACAGTACCCTCAGCAATAAGCCCTTCAGACAGTATAGCCGCACC
AGGAGATCGAATCGGCCGCATTTCATCTCATCAATCAGGGCCAGGTAGGT
AAGCTTTCGGTACTGTCGTCGAATTTTTGTATTAGGCTAGCACGTTCAAA
TTACGAAAAGACATCAATCTTACACACATGGACACGCCTTAAGATTACCT
CCACGAGACCGGAACGGCGTCTTTATTCATTGCGAGGAAAAAACTGCGGA
AATGTGCTCTCATGTTTGAGTCTGCACAGATACTTTGTTCCAAAGCTCAC
AAACCCTTTCTCTCGATCTCTGTTGCAGGTACATATATTAAGGGTGGCCA
CATTTATGCAAGCATTTTGGGGAACATCCAGGTAAGGCGCGGTTGTTTGC
CGGCATTGTTTGGTTCTCTGCTGGCAGGGAATGTCTAAGATTATTCATTG
ATTGCTTAATTTATGGAAGCAACCCCCTGAGTGGTCCATACTCTCTATTG
ATAAGCATATTTTTTCATCAAATCGGGACAGATTCTTCAGCCCGAAAAAG
AGGGGGATCTACCCATGCTTCGGGTCAGCAATCCTTACAAAGCGGACGCC
GACCACGCGGGCGCCCAGAACGTCGTTCTCGCTGTGGGTCATGTGGTAAC
GACGCGGGTCCTGCGCATCACCAGCAAACAAGCCTACGTGGAAATCCTTG
CTCTGGGCAGTGTCGTTCTCCGACAGACCTGTCAGGGCATCATCAAGAAA
GAAGATGTGTCGGATCACGACATCGATCGCATCGAGATTCCTCGTTGCTT
CCGACCTGGAGACATTGTGAGGGCGCGTGTGGTGTCGCTTGGCGATAGTC
GGCAATACTACTTAAAGACGGCCGAGAGTGAGCTCGGAGTGGTGTATGCC
AGAAGTCAGACGCAGCTGGAGGAGGGCGGGGCGGAGGGAGGGGGGAGAGT
GATGGTGCCTGTGTCGTGGGAAGCCATGATGGACCCCTTGACTAAAGCAA
CAGAACCACGGAAGGTCGCCAAGCCTTCAGCAAAGACAGACTAG back to topCoding sequence (CDS) from alignment at CM002458.1:936136..937179- >rna2125 ID=rna2125|Name=rna2125|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at CM002458.1:936136..937179- (Nannochloropsis gaditana)
ATTCTTCAGCCCGAAAAAGAGGGGGATCTACCCATGCTTCGGGTCAGCAA
TCCTTACAAAGCGGACGCCGACCACGCGGGCGCCCAGAACGTCGTTCTCG
CTGTGGGTCATGTGGTAACGACGCGGGTCCTGCGCATCACCAGCAAACAA
GCCTACGTGGAAATCCTTGCTCTGGGCAGTGTCGTTCTCCGACAGACCTG
TCAGGGCATCATCAAGAAAGAAGATGTGTCGGATCACGACATCGATCGCA
TCGAGATTCCTCGTTGCTTCCGACCTGGAGACATTGTGAGGGCGCGTGTG
GTGTCGCTTGGCGATAGTCGGCAATACTACTTAAAGACGGCCGAGAGTGA
GCTCGGAGTGGTGTATGCCAGAAGTCAGACGCAGCTGGAGGAGGGCGGGG
CGGAGGGAGGGGGGAGAGTGATGGTGCCTGTGTCGTGGGAAGCCATGATG
GACCCCTTGACTAAAGCAACAGAACCACGGAAGGTCGCCAAGCCTTCAGC
AAAGACAGACTAGGTACATATATTAAGGGTGGCCACATTTATGCAAGCAT
TTTGGGGAACATCCAGATGGATACAGTACCCTCAGCAATAAGCCCTTCAG
ACAGTATAGCCGCACCAGGAGATCGAATCGGCCGCATTTCATCTCATCAA
TCAGGGCCAGATTCTTCAGCCCGAAAAAGAGGGGGATCTACCCATGCTTC
GGGTCAGCAATCCTTACAAAGCGGACGCCGACCACGCGGGCGCCCAGAAC
GTCGTTCTCGCTGTGGGTCATGTGGTAACGACGCGGGTCCTGCGCATCAC
CAGCAAACAAGCCTACGTGGAAATCCTTGCTCTGGGCAGTGTCGTTCTCC
GACAGACCTGTCAGGGCATCATCAAGAAAGAAGATGTGTCGGATCACGAC
ATCGATCGCATCGAGATTCCTCGTTGCTTCCGACCTGGAGACATTGTGAG
GGCGCGTGTGGTGTCGCTTGGCGATAGTCGGCAATACTACTTAAAGACGG
CCGAGAGTGAGCTCGGAGTGGTGTATGCCAGAAGTCAGACGCAGCTGGAG
GAGGGCGGGGCGGAGGGAGGGGGGAGAGTGATGGTGCCTGTGTCGTGGGA
AGCCATGATGGACCCCTTGACTAAAGCAACAGAACCACGGAAGGTCGCCA
AGCCTTCAGCAAAGACAGACTAGGTACATATATTAAGGGTGGCCACATTT
ATGCAAGCATTTTGGGGAACATCCAGATGGATACAGTACCCTCAGCAATA
AGCCCTTCAGACAGTATAGCCGCACCAGGAGATCGAATCGGCCGCATTTC
ATCTCATCAATCAGGGCCAGATTCTTCAGCCCGAAAAAGAGGGGGATCTA
CCCATGCTTCGGGTCAGCAATCCTTACAAAGCGGACGCCGACCACGCGGG
CGCCCAGAACGTCGTTCTCGCTGTGGGTCATGTGGTAACGACGCGGGTCC
TGCGCATCACCAGCAAACAAGCCTACGTGGAAATCCTTGCTCTGGGCAGT
GTCGTTCTCCGACAGACCTGTCAGGGCATCATCAAGAAAGAAGATGTGTC
GGATCACGACATCGATCGCATCGAGATTCCTCGTTGCTTCCGACCTGGAG
ACATTGTGAGGGCGCGTGTGGTGTCGCTTGGCGATAGTCGGCAATACTAC
TTAAAGACGGCCGAGAGTGAGCTCGGAGTGGTGTATGCCAGAAGTCAGAC
GCAGCTGGAGGAGGGCGGGGCGGAGGGAGGGGGGAGAGTGATGGTGCCTG
TGTCGTGGGAAGCCATGATGGACCCCTTGACTAAAGCAACAGAACCACGG
AAGGTCGCCAAGCCTTCAGCAAAGACAGACTAGGTACATATATTAAGGGT
GGCCACATTTATGCAAGCATTTTGGGGAACATCCAGATGGATACAGTACC
CTCAGCAATAAGCCCTTCAGACAGTATAGCCGCACCAGGAGATCGAATCG
GCCGCATTTCATCTCATCAATCAGGGCCAG back to top
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