EWM28534.1, cds2117 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|585110952|gb|EWM28534.1| (3 -5 exoribonuclease csl4 [Nannochloropsis gaditana]) HSP 1 Score: 445.277 bits (1144), Expect = 3.508e-158 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query: 1 MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219
MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD
Sbjct: 1 MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|553188845|ref|XP_005854879.1| (exosome complex component CSL4 [Nannochloropsis gaditana CCMP526] >gi|422294187|gb|EKU21487.1| exosome complex component CSL4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 350.132 bits (897), Expect = 7.158e-121 Identity = 171/176 (97.16%), Postives = 173/176 (98.30%), Query Frame = 0
Query: 44 ILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219
++ QILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD
Sbjct: 21 LINQGQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 196
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|299470812|emb|CBN78635.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 180.259 bits (456), Expect = 5.999e-54 Identity = 91/201 (45.27%), Postives = 130/201 (64.68%), Query Frame = 0
Query: 14 IAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214
+ PG R+GR S +++GPGTY++G +IYAS++G E P L VS P +A A + V+ VG V RV RI+++QA+VEI+ +G VLR+ +GI++KED+ ++D+ E+ + RPGDI+RARV+SLGDS QY+L TAE+ELGV +A+S G +M+P+SW+ M P TK EPRK AKP
Sbjct: 4 VVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKRARA-----ADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKS----------AAGAIMIPISWQEMQCPTTKEKEPRKCAKP 189
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|375332113|gb|AFA52596.1| (hypothetical protein [Vaucheria litorea]) HSP 1 Score: 179.489 bits (454), Expect = 1.216e-53 Identity = 96/208 (46.15%), Postives = 132/208 (63.46%), Query Frame = 0
Query: 13 SIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQ-PEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219
+ PGDRIGR + SG GTY++G HIY+S++G IQ ++ PE +LP+L V K G +L VG VV RV R+ + A V+IL G VLR+ CQGII+KEDV ++D++++ +CFRPGDIVR +V+SLG+SR Y+L T+ +LGV +ARS+ G V+VP+SWE M P TKA E RK AKP + +
Sbjct: 3 TTVCPGDRIGRCDEYTSGNGTYVRGPHIYSSLVGRIQKIEVPE---NLPVLTV----KGKKAVVGQ---ILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIRKEDVRSTEVDKVDMWKCFRPGDIVRTKVISLGNSRDYFLSTSGEDLGVSWARSE----------AGEVLVPISWEQMQCPKTKAVEFRKCAKPDNQQE 190
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|171693975|ref|XP_001911912.1| (hypothetical protein [Podospora anserina S mat+] >gi|170946936|emb|CAP73740.1| unnamed protein product [Podospora anserina S mat+] >gi|681096012|emb|CDP26141.1| Putative exoribonuclease CSL4 homolog [Podospora anserina S mat+]) HSP 1 Score: 160.999 bits (406), Expect = 5.800e-46 Identity = 95/221 (42.99%), Postives = 127/221 (57.47%), Query Frame = 0
Query: 13 SIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKE----------------GDLPMLRVSNPYK-ADADHAGAQN--VVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214
++A PG +G S +Q GPGT+I +++AS++G + I QP K +LP + V+ P + A +DHAG + V+ VG+VV RV+RIT +QA V IL G VL QG+I+ +DV + DR++I FRPGDIVRA V+SLGD YYL TA +ELGV+ A S+ G M PVSW+ DP T TE RKVAKP
Sbjct: 7 TLAIPGQLLGSTSRYQPGPGTHIHNHNVHASLMGTVHIAQPAKAPGPVKRLTKITPAPAPAELPTISVTVPTRSAGSDHAGQKKREVLPEVGNVVLCRVIRITPRQAVVSILVCGDTVLDAEWQGLIRVQDVRATEKDRVKIYESFRPGDIVRAEVISLGDQANYYLSTARNELGVILATSE----------AGNAMHPVSWKEYRDPETGLTELRKVAKP 217
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1183456023|gb|ORY80082.1| (hypothetical protein LY90DRAFT_449542 [Neocallimastix californiae]) HSP 1 Score: 157.918 bits (398), Expect = 2.733e-45 Identity = 85/206 (41.26%), Postives = 124/206 (60.19%), Query Frame = 0
Query: 11 SDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQ-PEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPS 215
S +I PG ++G + + GPGTYI+ +IY+S LG I I PEK+ LP + V Q+++ V +VT +++R+ K A + I+ +G+ + QGII+ +DV + D+++I R FRPGDIVRARV+SLGD YYL TAE+ELGV++A+S + G M+P+SW+ MM P TK E RK AKP+
Sbjct: 2 SATIVTPGKKLGNVQEYNVGPGTYIRNNYIYSSTLGEIYITNDPEKK--LPCISVV--------KEKEQSIIPEVDSIVTGKIIRVNPKMATLAIMVVGNKPCKDDFQGIIRVQDVRATEKDKVQIYRSFRPGDIVRARVISLGDRHSYYLTTAENELGVIFAQSIS----------GETMIPISWQQMMCPKTKVMEYRKCAKPN 187
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1026972680|ref|XP_016609699.1| (hypothetical protein SPPG_03458 [Spizellomyces punctatus DAOM BR117] >gi|907096006|gb|KND01660.1| hypothetical protein SPPG_03458 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 157.532 bits (397), Expect = 4.030e-45 Identity = 83/205 (40.49%), Postives = 123/205 (60.00%), Query Frame = 0
Query: 12 DSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSA 216
+ I PG R+ ++ GTY K IYAS++G QIL PEKEG+ P++ V+ + N + VG +VT R++R+ A + I+ +G+ ++ QG+I+ +DV + D+++I + FRPGD+VRA VVSLGD+R YYL TA++ELGV++A+S G M+PVSWE M+ P TK E RK AKP +
Sbjct: 2 NDIVTPGQRLAHAGDYKVSSGTYQKDDFIYASVVGISQILPPEKEGESPIITVTRHKEF--------NPIPDVGSIVTGRIIRVNQFSATMTIMVVGTAPCKENFQGVIRVQDVRATERDKVQIYKSFRPGDVVRAEVVSLGDARSYYLSTAKNELGVIFAQSM----------AGYTMIPVSWEEMICPKTKVVEHRKCAKPES 188
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1183330317|gb|ORX60057.1| (hypothetical protein BCR36DRAFT_316404 [Piromyces finnis]) HSP 1 Score: 156.377 bits (394), Expect = 1.196e-44 Identity = 85/205 (41.46%), Postives = 123/205 (60.00%), Query Frame = 0
Query: 11 SDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPS 215
S I PG ++G I ++ GPGTYIK +IYAS +G I I+ + LP + V D + Q+V+ V +VT +++R+ K A + I+ +G+ + QGII+ +DV + D+++I FRPGDIVRARV+SLGD YYL TAE+ELGV++A+S + G M+P+SW+ MM P TK E RK AKP+
Sbjct: 2 STKIVTPGKKLGTIHEYEIGPGTYIKNNYIYASTVGEIYIIN-DSNKKLPCISVVK----DKE----QSVIPEVDSIVTGKIIRVNPKMATLAIMVVGNKPCKDDFQGIIRVQDVRSTEKDKVQIYNSFRPGDIVRARVISLGDRHSYYLTTAENELGVIFAQSIS----------GETMIPISWQQMMCPKTKVMEYRKCAKPN 187
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1000223621|gb|KXJ92624.1| (hypothetical protein Micbo1qcDRAFT_117568 [Microdochium bolleyi]) HSP 1 Score: 156.762 bits (395), Expect = 1.513e-44 Identity = 90/216 (41.67%), Postives = 121/216 (56.02%), Query Frame = 0
Query: 14 IAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKE---------------GDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214
+A PG +G + GPGT+++ ++YAS+LG + + QP+K G LP + VS P A H + V+ VG++V RV RI +QA V IL +G VL QGII+ +DV + DR++I FRPGDIVRA+V+SLGD YYL TA +ELGV+ A S+ G M PVSW+ DP T +E RKVAKP
Sbjct: 4 VAVPGQHLGSTDKYIPGPGTHVRESNVYASLLGTVAVAQPDKAPGPAKRLNRIVSLQAGPLPTISVSRP--GAAAHEKQREVLPDVGNIVLCRVTRIQPRQATVAILVVGDTVLEADWQGIIRVQDVRATEKDRVKIYESFRPGDIVRAQVISLGDQANYYLATASNELGVIMATSE----------AGNTMYPVSWKEYKDPETGLSEARKVAKP 207
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|971515031|dbj|GAQ83166.1| (exosome complex component CSL4 [Klebsormidium nitens]) HSP 1 Score: 156.377 bits (394), Expect = 1.818e-44 Identity = 90/206 (43.69%), Postives = 123/206 (59.71%), Query Frame = 0
Query: 12 DSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQP----EKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAK 213
+++ PGD +GR+S + SG GT+++G HI ASI+G I P + LP++ V N + A V G VT +V+RI ++A +IL +G + Q GII+++DV +ID++EI FRPGDIVRA V+SLGD+R YYL TA++ELGVV+A+S G MVPVSWE M P TK E RKVAK
Sbjct: 5 NAVKTPGDILGRVSEYTSGRGTHVRGDHICASIVGQQSISAPAAGASDKAQLPVIEVINGKERSA--------VPETGSTVTAKVVRIDHRKATADILCVGLRAVTQKFTGIIRQQDVRATEIDKVEIATSFRPGDIVRAEVLSLGDARAYYLSTAKNELGVVFAKSP----------AGVRMVPVSWEKMQCPKTKVIELRKVAK 192 The following BLAST results are available for this feature:
BLAST of EWM28534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|