EWM28534.1, cds2117 (CDS) Nannochloropsis gaditana

Overview
NameEWM28534.1
Unique Namecds2117
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:937086..937179 -
Alignment locationCM002458.1:936799..936851 -
Alignment locationCM002458.1:936136..936648 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28534.1
Product3 -5 exoribonuclease csl4
Orig transcript idgnl|cribi|Naga_100009g36.577.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:937086..937179 -
CM002458.1supercontigCM002458.1:936799..936851 -
CM002458.1supercontigCM002458.1:936136..936648 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0000178exosome (RNase complex)
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR019495EXOSC1
IPR012340NA-bd_OB-fold
IPR025721Exosome_cplx_N_dom
Homology
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|585110952|gb|EWM28534.1| (3 -5 exoribonuclease csl4 [Nannochloropsis gaditana])

HSP 1 Score: 445.277 bits (1144), Expect = 3.508e-158
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query:    1 MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219
            MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD
Sbjct:    1 MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|553188845|ref|XP_005854879.1| (exosome complex component CSL4 [Nannochloropsis gaditana CCMP526] >gi|422294187|gb|EKU21487.1| exosome complex component CSL4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 350.132 bits (897), Expect = 7.158e-121
Identity = 171/176 (97.16%), Postives = 173/176 (98.30%), Query Frame = 0
Query:   44 ILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219
            ++   QILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD
Sbjct:   21 LINQGQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 196          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|299470812|emb|CBN78635.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 180.259 bits (456), Expect = 5.999e-54
Identity = 91/201 (45.27%), Postives = 130/201 (64.68%), Query Frame = 0
Query:   14 IAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214
            +  PG R+GR S +++GPGTY++G +IYAS++G         E   P L VS P +A A      + V+ VG  V  RV RI+++QA+VEI+ +G  VLR+  +GI++KED+   ++D+ E+ +  RPGDI+RARV+SLGDS QY+L TAE+ELGV +A+S            G +M+P+SW+ M  P TK  EPRK AKP
Sbjct:    4 VVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKRARA-----ADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKS----------AAGAIMIPISWQEMQCPTTKEKEPRKCAKP 189          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|375332113|gb|AFA52596.1| (hypothetical protein [Vaucheria litorea])

HSP 1 Score: 179.489 bits (454), Expect = 1.216e-53
Identity = 96/208 (46.15%), Postives = 132/208 (63.46%), Query Frame = 0
Query:   13 SIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQ-PEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSAKTD 219
            +   PGDRIGR   + SG GTY++G HIY+S++G IQ ++ PE   +LP+L V    K      G    +L VG VV  RV R+ +  A V+IL  G  VLR+ CQGII+KEDV   ++D++++ +CFRPGDIVR +V+SLG+SR Y+L T+  +LGV +ARS+           G V+VP+SWE M  P TKA E RK AKP  + +
Sbjct:    3 TTVCPGDRIGRCDEYTSGNGTYVRGPHIYSSLVGRIQKIEVPE---NLPVLTV----KGKKAVVGQ---ILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIRKEDVRSTEVDKVDMWKCFRPGDIVRTKVISLGNSRDYFLSTSGEDLGVSWARSE----------AGEVLVPISWEQMQCPKTKAVEFRKCAKPDNQQE 190          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|171693975|ref|XP_001911912.1| (hypothetical protein [Podospora anserina S mat+] >gi|170946936|emb|CAP73740.1| unnamed protein product [Podospora anserina S mat+] >gi|681096012|emb|CDP26141.1| Putative exoribonuclease CSL4 homolog [Podospora anserina S mat+])

HSP 1 Score: 160.999 bits (406), Expect = 5.800e-46
Identity = 95/221 (42.99%), Postives = 127/221 (57.47%), Query Frame = 0
Query:   13 SIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKE----------------GDLPMLRVSNPYK-ADADHAGAQN--VVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214
            ++A PG  +G  S +Q GPGT+I   +++AS++G + I QP K                  +LP + V+ P + A +DHAG +   V+  VG+VV  RV+RIT +QA V IL  G  VL    QG+I+ +DV   + DR++I   FRPGDIVRA V+SLGD   YYL TA +ELGV+ A S+           G  M PVSW+   DP T  TE RKVAKP
Sbjct:    7 TLAIPGQLLGSTSRYQPGPGTHIHNHNVHASLMGTVHIAQPAKAPGPVKRLTKITPAPAPAELPTISVTVPTRSAGSDHAGQKKREVLPEVGNVVLCRVIRITPRQAVVSILVCGDTVLDAEWQGLIRVQDVRATEKDRVKIYESFRPGDIVRAEVISLGDQANYYLSTARNELGVILATSE----------AGNAMHPVSWKEYRDPETGLTELRKVAKP 217          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1183456023|gb|ORY80082.1| (hypothetical protein LY90DRAFT_449542 [Neocallimastix californiae])

HSP 1 Score: 157.918 bits (398), Expect = 2.733e-45
Identity = 85/206 (41.26%), Postives = 124/206 (60.19%), Query Frame = 0
Query:   11 SDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQ-PEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPS 215
            S +I  PG ++G +  +  GPGTYI+  +IY+S LG I I   PEK+  LP + V             Q+++  V  +VT +++R+  K A + I+ +G+   +   QGII+ +DV   + D+++I R FRPGDIVRARV+SLGD   YYL TAE+ELGV++A+S +          G  M+P+SW+ MM P TK  E RK AKP+
Sbjct:    2 SATIVTPGKKLGNVQEYNVGPGTYIRNNYIYSSTLGEIYITNDPEKK--LPCISVV--------KEKEQSIIPEVDSIVTGKIIRVNPKMATLAIMVVGNKPCKDDFQGIIRVQDVRATEKDKVQIYRSFRPGDIVRARVISLGDRHSYYLTTAENELGVIFAQSIS----------GETMIPISWQQMMCPKTKVMEYRKCAKPN 187          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1026972680|ref|XP_016609699.1| (hypothetical protein SPPG_03458 [Spizellomyces punctatus DAOM BR117] >gi|907096006|gb|KND01660.1| hypothetical protein SPPG_03458 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 157.532 bits (397), Expect = 4.030e-45
Identity = 83/205 (40.49%), Postives = 123/205 (60.00%), Query Frame = 0
Query:   12 DSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPSA 216
            + I  PG R+     ++   GTY K   IYAS++G  QIL PEKEG+ P++ V+   +         N +  VG +VT R++R+    A + I+ +G+   ++  QG+I+ +DV   + D+++I + FRPGD+VRA VVSLGD+R YYL TA++ELGV++A+S            G  M+PVSWE M+ P TK  E RK AKP +
Sbjct:    2 NDIVTPGQRLAHAGDYKVSSGTYQKDDFIYASVVGISQILPPEKEGESPIITVTRHKEF--------NPIPDVGSIVTGRIIRVNQFSATMTIMVVGTAPCKENFQGVIRVQDVRATERDKVQIYKSFRPGDVVRAEVVSLGDARSYYLSTAKNELGVIFAQSM----------AGYTMIPVSWEEMICPKTKVVEHRKCAKPES 188          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1183330317|gb|ORX60057.1| (hypothetical protein BCR36DRAFT_316404 [Piromyces finnis])

HSP 1 Score: 156.377 bits (394), Expect = 1.196e-44
Identity = 85/205 (41.46%), Postives = 123/205 (60.00%), Query Frame = 0
Query:   11 SDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKPS 215
            S  I  PG ++G I  ++ GPGTYIK  +IYAS +G I I+  +    LP + V      D +    Q+V+  V  +VT +++R+  K A + I+ +G+   +   QGII+ +DV   + D+++I   FRPGDIVRARV+SLGD   YYL TAE+ELGV++A+S +          G  M+P+SW+ MM P TK  E RK AKP+
Sbjct:    2 STKIVTPGKKLGTIHEYEIGPGTYIKNNYIYASTVGEIYIIN-DSNKKLPCISVVK----DKE----QSVIPEVDSIVTGKIIRVNPKMATLAIMVVGNKPCKDDFQGIIRVQDVRSTEKDKVQIYNSFRPGDIVRARVISLGDRHSYYLTTAENELGVIFAQSIS----------GETMIPISWQQMMCPKTKVMEYRKCAKPN 187          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|1000223621|gb|KXJ92624.1| (hypothetical protein Micbo1qcDRAFT_117568 [Microdochium bolleyi])

HSP 1 Score: 156.762 bits (395), Expect = 1.513e-44
Identity = 90/216 (41.67%), Postives = 121/216 (56.02%), Query Frame = 0
Query:   14 IAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKE---------------GDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214
            +A PG  +G    +  GPGT+++  ++YAS+LG + + QP+K                G LP + VS P    A H   + V+  VG++V  RV RI  +QA V IL +G  VL    QGII+ +DV   + DR++I   FRPGDIVRA+V+SLGD   YYL TA +ELGV+ A S+           G  M PVSW+   DP T  +E RKVAKP
Sbjct:    4 VAVPGQHLGSTDKYIPGPGTHVRESNVYASLLGTVAVAQPDKAPGPAKRLNRIVSLQAGPLPTISVSRP--GAAAHEKQREVLPDVGNIVLCRVTRIQPRQATVAILVVGDTVLEADWQGIIRVQDVRATEKDRVKIYESFRPGDIVRAQVISLGDQANYYLATASNELGVIMATSE----------AGNTMYPVSWKEYKDPETGLSEARKVAKP 207          
BLAST of EWM28534.1 vs. NCBI_GenBank
Match: gi|971515031|dbj|GAQ83166.1| (exosome complex component CSL4 [Klebsormidium nitens])

HSP 1 Score: 156.377 bits (394), Expect = 1.818e-44
Identity = 90/206 (43.69%), Postives = 123/206 (59.71%), Query Frame = 0
Query:   12 DSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQP----EKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAK 213
            +++  PGD +GR+S + SG GT+++G HI ASI+G   I  P      +  LP++ V N  +  A        V   G  VT +V+RI  ++A  +IL +G   + Q   GII+++DV   +ID++EI   FRPGDIVRA V+SLGD+R YYL TA++ELGVV+A+S            G  MVPVSWE M  P TK  E RKVAK
Sbjct:    5 NAVKTPGDILGRVSEYTSGRGTHVRGDHICASIVGQQSISAPAAGASDKAQLPVIEVINGKERSA--------VPETGSTVTAKVVRIDHRKATADILCVGLRAVTQKFTGIIRQQDVRATEIDKVEIATSFRPGDIVRAEVLSLGDARAYYLSTAKNELGVVFAKSP----------AGVRMVPVSWEKMQCPKTKVIELRKVAK 192          
The following BLAST results are available for this feature:
BLAST of EWM28534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110952|gb|EWM28534.1|3.508e-158100.003 -5 exoribonuclease csl4 [Nannochloropsis gaditan... [more]
gi|553188845|ref|XP_005854879.1|7.158e-12197.16exosome complex component CSL4 [Nannochloropsis ga... [more]
gi|299470812|emb|CBN78635.1|5.999e-5445.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|375332113|gb|AFA52596.1|1.216e-5346.15hypothetical protein [Vaucheria litorea][more]
gi|171693975|ref|XP_001911912.1|5.800e-4642.99hypothetical protein [Podospora anserina S mat+] >... [more]
gi|1183456023|gb|ORY80082.1|2.733e-4541.26hypothetical protein LY90DRAFT_449542 [Neocallimas... [more]
gi|1026972680|ref|XP_016609699.1|4.030e-4540.49hypothetical protein SPPG_03458 [Spizellomyces pun... [more]
gi|1183330317|gb|ORX60057.1|1.196e-4441.46hypothetical protein BCR36DRAFT_316404 [Piromyces ... [more]
gi|1000223621|gb|KXJ92624.1|1.513e-4441.67hypothetical protein Micbo1qcDRAFT_117568 [Microdo... [more]
gi|971515031|dbj|GAQ83166.1|1.818e-4443.69exosome complex component CSL4 [Klebsormidium nite... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2125rna2125Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications