rna2124, rna2124 (mRNA) Nannochloropsis gaditana

Overview
Namerna2124
Unique Namerna2124
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1338
Alignment locationCM002458.1:934914..935786 +

Link to JBrowse

Properties
Property NameValue
Productgcn5-related n-acetyltransferase
Orig transcript idgnl|cribi|Naga_100009g37.574.mrna
Orig protein idgnl|cribi|Naga_100009g37.574
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:934914..935786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g37gene2028Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2124rna2124-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28531.1cds2116Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2124 ID=rna2124|Name=rna2124|organism=Nannochloropsis gaditana|type=mRNA|length=1338bp
ATGGACGATGGGGCTTTCGAAGCCTTTGCGTCGTGTCGCTTTGGGGACGC
AGCGCGTTTGGCCGCCGCAGAACTTGCTTCTCAGGGGAAAGAGCAGCTCG
ACCGGAAAGAGGATAGTCCTTTTTCGATGAATGCAAGGGATGAAAGTACT
TTTCTACCTTGCGCGCCGTGGAACTGGGAAGGCGATGGGCGTACGGATGA
GCGACGCATACTTATTAGACTTGAGGAGCATTGTCGAAGGCAAGACTTCC
CGGGGGAAAGCGAGACTGCGGAAAGCGAACTGATTGTCCGCAGTCGTTTG
TGTGCATTCCTTGCACAACGTTTTATACTAGTTGCCATGCTTTCCATCCT
TCTGCAATGCGCCTTTGAGCTCAAGGAAGAAGAGCAGGAACGCCTCTTCA
TCAAGCACTACACTACTCAAAAAAATATTCCTCTCCCTGTTGCTCTCATT
TGGCTTCGAGTTTGTCTGACGAAGGGCCGCTTCTGGAATGAGGCGGTGCG
ACGAGCGGTAACGCAATTGCTTGCAGCGTTACACACTGAAATACATTTAA
TGCTGCCCAACGGTATCAATGGAACGAAGTCGCCATCTAAAGTATCGGAA
TTTTCGCATCCTCTCGAAGGACATGCGCAACCAGCACTTACAAGAGTACG
GTCGGATTCATACCTGGAAGACGGCGTGCGACAGGCACTTGTAGACGCCT
GCCGAGCCGCTATCAAAAGGCAACGGATCTTAATGCGCCAAAATGCCCGT
GGAAATGGAAAGAGAGGAGAGACTCAAAGCTTGAAACATTCGACGCATCC
GGCTCCCTCAACTTTCCCGGCTTCGTGCAAGAGGGGCAACCCACCGTCCT
CCCCACAGTCAAGCTCAGGGGATGTCTGGTCACAGTCCTTGTCAGACAGA
GTCCTGAATGCATTTGGGATTAAGCGGGAGGACGTTGACCAACAAAATTC
GCCATTTCAAGAGGATTCTCATCGCACCAGGACTAGTGACGAAGGAGACA
GATGTCCCAGCACACACAGGGCAACTGGAGGTAGAGCGGGACAGAGCTGG
AAACATGAACAGGACGGAGAAACATGCCCGGATTCGAACTCGGGGAACTC
ATGTATTCTTTCACGGCCTCTTTTTGTGCTCCAGGGTGGTAGGATCATGA
GGCGGATGATTACCTCCTCTCCTTACCAGGTCCTGATCAGCGTTCTTGGT
TTTGTTATCATAGTTCTGGGATACTCCATCAGACGAGGTTTGAGACTGGG
AAACCGCCCATTCAAGCGATTCATTACGCGGGTTTTGCAACGAGCCGTGG
TAATTCTCTGGTTGGTGGGTGGCAAGAGAGAGGCTTGA
back to top

protein sequence of rna2124

>rna2124-protein ID=rna2124-protein|Name=rna2124|organism=Nannochloropsis gaditana|type=polypeptide|length=290bp
MLSPCRSSIGLFMILATFMPTAALSAFIPSSPTSISSIATTTTLRSRSNT
ARPSISLDSFFGRRPPRSTTTTVPSPPATSIIISEVSRQDLRLAASVCIE
SFFGTADRLNPVRSMQLATLLDEQCADLRSRFGGRAVGGSLYLQAVDADG
AMVGFVEVGITQSLKYGMEQYGVPVRDERPYLANLSVRPALRRQGVGRRL
VHACEEMVRSWGYDELILQVEDSNQQARNLYRDMGYIDLYTDATGRKYEL
SGMSIKNVRINKVTLRKALVPSAAKNPFAALWGQLSISQG
back to top

mRNA from alignment at CM002458.1:934914..935786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2124 ID=rna2124|Name=rna2124|organism=Nannochloropsis gaditana|type=mRNA|length=873bp|location=Sequence derived from alignment at CM002458.1:934914..935786+ (Nannochloropsis gaditana)
ATGCTCTCTCCGTGCAGATCATCGATTGGCCTTTTCATGATCCTTGCCAC
TTTTATGCCGACTGCTGCCTTGTCTGCATTCATTCCTTCGTCGCCGACAT
CTATCAGCTCCATTGCGACCACGACGACCCTAAGATCCCGCAGCAACACG
GCGAGGCCAAGCATAAGCCTTGACTCCTTCTTTGGAAGGCGTCCACCGCg
atccaccaccaccactgTTCCGTCTCCGCCCGCCACATCGATCATAATAT
CAGAAGTCTCTCGGCAAGACTTACGCCTAGCGGCATCGGTGTGCATTGAA
AGTTTTTTCGGCACGGCCGACCGCCTCAACCCTGTACGCTCCATGCAACT
TGCCACTCTCCTCGACGAGCAATGCGCGGACCTGCGCTCTCGCTTCGGAG
GTCGTGCGGTGGGAGGGTCCCTATATctgcaggcggtggacgcAGACGGG
GCAATGGTGGGATTTGTAGAGGTGGGAATCACACAATCCTTGAAATACGG
CATGGAGCAATACGGCGTGCCCGTGCGCGATGAGCGACCGTACCTGGCCA
ATCTATCGGTGCGACCAGCCTTGCGTCGGCAAGGTGTCGGTCGCCGGCTA
GTGCACGCATGCGAGGAGATGGTTCGAAGCTGGGGCTATGATGAGCTGAT
TCTGCAAGTGGAAGACAGCAACCAGCAGGCCCGCAATCTGTACCGAGACA
TGGGCTACATCGATTTATACACGGACGCGACGGGGCGTAAATATGAATTG
AGTGGAATGAGCATAAAGAACGTTAGGATCAACAAGGTAACGTTGCGGAA
GGCCTTGGTCCCTTCTGCGGCCAAGAATCCTTTTGCGGCGCTTTGGGGCC
AGCTCTCCATTTCGCAGGGGTAG
back to top

Coding sequence (CDS) from alignment at CM002458.1:934914..935786+

>rna2124 ID=rna2124|Name=rna2124|organism=Nannochloropsis gaditana|type=CDS|length=873bp|location=Sequence derived from alignment at CM002458.1:934914..935786+ (Nannochloropsis gaditana)
ATGCTCTCTCCGTGCAGATCATCGATTGGCCTTTTCATGATCCTTGCCAC
TTTTATGCCGACTGCTGCCTTGTCTGCATTCATTCCTTCGTCGCCGACAT
CTATCAGCTCCATTGCGACCACGACGACCCTAAGATCCCGCAGCAACACG
GCGAGGCCAAGCATAAGCCTTGACTCCTTCTTTGGAAGGCGTCCACCGCg
atccaccaccaccactgTTCCGTCTCCGCCCGCCACATCGATCATAATAT
CAGAAGTCTCTCGGCAAGACTTACGCCTAGCGGCATCGGTGTGCATTGAA
AGTTTTTTCGGCACGGCCGACCGCCTCAACCCTGTACGCTCCATGCAACT
TGCCACTCTCCTCGACGAGCAATGCGCGGACCTGCGCTCTCGCTTCGGAG
GTCGTGCGGTGGGAGGGTCCCTATATctgcaggcggtggacgcAGACGGG
GCAATGGTGGGATTTGTAGAGGTGGGAATCACACAATCCTTGAAATACGG
CATGGAGCAATACGGCGTGCCCGTGCGCGATGAGCGACCGTACCTGGCCA
ATCTATCGGTGCGACCAGCCTTGCGTCGGCAAGGTGTCGGTCGCCGGCTA
GTGCACGCATGCGAGGAGATGGTTCGAAGCTGGGGCTATGATGAGCTGAT
TCTGCAAGTGGAAGACAGCAACCAGCAGGCCCGCAATCTGTACCGAGACA
TGGGCTACATCGATTTATACACGGACGCGACGGGGCGTAAATATGAATTG
AGTGGAATGAGCATAAAGAACGTTAGGATCAACAAGGTAACGTTGCGGAA
GGCCTTGGTCCCTTCTGCGGCCAAGAATCCTTTTGCGGCGCTTTGGGGCC
AGCTCTCCATTTCGCAGGGGTAG
back to top
Synonyms
Publications