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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100009g38.567.mrna |
| Orig protein id | gnl|cribi|Naga_100009g38.567 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:932646..934557 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2123 ID=rna2123|Name=rna2123|organism=Nannochloropsis gaditana|type=mRNA|length=1456bp
GTGACTGTAAATAAAATGTATTCTCGATTAGGAAGAGGTGGCGATACACG
GTTCTCGATCCTGCGTTTGACGTATCATCGCTTGTTGTGTTGAACATGGC
TGAGTGCAGGGGGGTTTCCTAGCTATCAAGTTAAAAATTTACCAACTCCA
ACAAATTGAAGCCTTACCTTTCATTTTTTTTGCACAATGTTCTCTCCAGA
ATTGAGAAACTATTAACGCCGTAACTATTCAGGTAGCTATGGAGCCATCG
CTGGCGTCAGGCCCCCATCGCAGACGCCGTGACGGCATAGTGCCGCATTT
TTTTGGGTGCCTCGTTCTCTTCTTTACCATTTGTGCATCAAATGTACTCT
GTTTTCGTGTGAAACCTTGTATTGCGCGGGATACCAGTCGAAATGTTCGA
CGAGCATGCAGGCGACCGACCCCCTCAAGAGGAGGTGGTGAAGATGTGGA
TAGGATGGACGCATTGAAAACAGCTGGAATGGTCGCTACTGCAGGAGGAC
TAGCCATCGGTGGTCTACCCAATCTGGTCGAGGCTAAAAAGATTATAAAT
TTGGAAGAAGCTCGGGAGCTGGGGGAAAAGAAAATGATAGATATTGAAAA
AGCGAAGGGGCCCTTGATCAAGGTGCGGGACAACGTCAAATATCGGGAAG
AACTCATCGGTAAGGGCGACATTTTCAAAGCGGGGGACCTGGTCAAGATC
CGCTACCAAGTGTACAAGGGCAACGGAGACTACATGTTCAGCACGGGGTA
CGGCCGCGAGTTCCAGAACGACGTAGGCGGTAGGTCTCCCATGGAATGCT
GGGTCGACATGGGCCACCAAGGGACGTGGGCGCCACATACCATACCGCGG
GCGTGAAAGGCGTGTGGATGGAGGAATGGAGACAAGGGGGGGCGCAATCT
CCTCGGCTCGTTGCACGCGACCGTCTGAGTGTCGTGCTGACGTGATCTCT
TTCCCGCCCTTCAATCCTCCTCCCGCTCATTCGTCCCACTCCCACCTGTT
CCCACCCCCAGACACCTACGATTTCACTTTTGGTCGGCCCAACTCCATCC
CCAAAGGCGCCGAGATCGGTATGGAGGGCATGCGCGTGGGCGGCAAACGC
AAGATCTCCGTCCCTCCCGAGCTAGGATGGCAGACATCTGGCGGTTTCCC
GGAACCCCAAACCTTCGGGGGAAAAAGAAAATTGCTGAATCACATGAACG
AGTTCTTGCAGTTCGAGGTGGAGGTGATCCGTGTTCGGCCAAAGAAGACA
TGAAGAGGGATGGAAAGTCCGTCTGGAGCGTAATTTGGCAGCTTTACGGG
GGCACGCACATCTATGTTTTCGAACGAAGGATTGCAAATCAGGTAGCGAT
AAGTTAGTGAATTGACAAAGAATTACTGACGAGTAATAAGAAACGCGTGA
CGCCTGTTGACATGATGTGCCTCACACCGCAAAATAAGCTTTAGGTCCTG
GCATCT back to topprotein sequence of rna2123 >rna2123-protein ID=rna2123-protein|Name=rna2123|organism=Nannochloropsis gaditana|type=polypeptide|length=445bp
MDDGAFEAFASCRFGDAARLAAAELASQGKEQLDRKEDSPFSMNARDEST
FLPCAPWNWEGDGRTDERRILIRLEEHCRRQDFPGESETAESELIVRSRL
CAFLAQRFILVAMLSILLQCAFELKEEEQERLFIKHYTTQKNIPLPVALI
WLRVCLTKGRFWNEAVRRAVTQLLAALHTEIHLMLPNGINGTKSPSKVSE
FSHPLEGHAQPALTRVRSDSYLEDGVRQALVDACRAAIKRQRILMRQNAR
GNGKRGETQSLKHSTHPAPSTFPASCKRGNPPSSPQSSSGDVWSQSLSDR
VLNAFGIKREDVDQQNSPFQEDSHRTRTSDEGDRCPSTHRATGGRAGQSW
KHEQDGETCPDSNSGNSCILSRPLFVLQGGRIMRRMITSSPYQVLISVLG
FVIIVLGYSIRRGLRLGNRPFKRFITRVLQRAVVILWLVGGKREA back to topmRNA from alignment at CM002458.1:932646..934557+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2123 ID=rna2123|Name=rna2123|organism=Nannochloropsis gaditana|type=mRNA|length=1912bp|location=Sequence derived from alignment at CM002458.1:932646..934557+ (Nannochloropsis gaditana)
ATGGACGATGGGGCTTTCGAAGCCTTTGCGTCGTGTCGCTTTGGGGACGC
AGCGCGTTTGGCCGCCGCAGAACTTGCTTCTCAGGGGAAAGAGCAGCTCG
ACCGGAAAGAGGATAGTCCTTTTTCGATGAATGCAAGGGATGAAAGTACT
TTTCTACCTTGCGCGCCGTGGAActgggaaggcgatgggcgtACGGATGA
GCGACGCATACTTATTAGACTTGAGGAGCATTGTCGAAGGCAAGACTTCC
CGGGGGAAAGCGAGACTGCGGAAAGCGAACTGATTGTCCGCAGTCGTTTG
TGTGCATTCCTTGCACAACGTTTTATACTAGTTGCCATGCTTTGTTAAGA
ATCCACAAGTATTGTGGATATGCGATAGTGAATCAAATATATTAAATAGT
CATGTTAACCCTCACAGGACTGACAAGTTGGCAGCCATCCTTCTGCAATG
CGCCTTTGAGctcaaggaagaagagcaggaacGCCTCTTCATCAAGCACT
ACACTACTCAAAAAAatattcctctccctgttGCTCTCATTTGGTGCGTT
TGATATCGTGTTTCTTGGGAGAAACGCAAATGTCGCATAAGCAGGGACCA
CTAGGATTCAATTGTCGTCTGCGCCGGATTATCCCTAGATTTTTGTTTCT
GTACGAAAAAAGTGCCGTCGTTATCTGTATAAATGCTATTTAATGCTTGT
TTTAAACCACCTCACTCACATAAATGTCCCGCTCATGTCTTCTCTACAGG
CTTCGAGTTTGTCTGACGAAGGGCCGCTTCTGGAATGAGGCGGTGCGACG
AGCGGTAACGCAATTGCTTGCAGCGTTACACACTGAAATACATTTAATGC
TGCCCAACGGTATCAATGGAACGAAGTCGCCATCTAAAGTATCGGAATTT
TCGCATCCTCTCGAAGGTGAGGATGAAGCCGATATATTCGAGGGAGTTCG
AAAGCACCTTTACGCACCaggagagcaagagaaagcatCATCGATGGCTA
AAAATAGTGAAGGGGTAAAGAAGCGTCTAGTAGCAGTACTGAGCATGTAC
AATCAAGTGATGGAGCTGCTGATATTGAAGATCATGCTGGAATCAGGACA
TGCGCAACCAGCACTTACAAGAGTACGGTCGGATTCATACCTGGAAGACG
GCGTGCGACAGGTACATTTGGATAGCATTGATACTGTAACGAATGCTTTA
TGGTTGCGTGAGTGTGACTTGGTACTGCAATGTGTAATTTTGATCGGTCT
ATCCACAGGCACTTGTAGACGCCTGCCGAGCCGCTATCAAAAGGCAACGG
ATCTTAATGCGCCAAAATGCCCGTGGAaatggaaagagaggagagactCA
AAGCTTGAAACATTCGACGCATCCGGCTCCCTCAACTTTCCCGGCTTCGT
GCAAGAGGGGCAACccaccgtcctccccacAGTCAAGCTCAGGGGATGTC
TGGTCACAGTCCTTGTCAGACAGAGTCCTGAATGCATTTGGGATTAAGCG
GGAGGACGTTGACCAACAAAATTCGCCATTTCAAGAGGATTCTCATCGCA
CCAGGACTAGTGACGAAGGAGACAGATGTCCCAGCACACACAGGGCAACT
GGAGGTAGAGCGGGACAGAGCTGGAAACATGAACAGGACGGAGAAACATG
CCCGGATTCGAACTCGGGGAACTCATGTATTCTTTCACGGCCTCTTTTTG
TGCTCCAGGGTGGTAGGATCATGAGGCGGATGattacctcctctccttac
CAGGTCCTGATCAGCGTTCTTGGTTTTGTTATCATAGTTCTGGGATACTC
CATCAGACGAGGTTTGAGACTGGGAAACCGCCCATTCAAGCGATTCATTA
CGCGGGTTTTGCAACGAGCCGTGGTAATTCTCTGGTTGGTGGGTGGCAAG
AGAGAGGcttga back to topCoding sequence (CDS) from alignment at CM002458.1:932646..934557+ >rna2123 ID=rna2123|Name=rna2123|organism=Nannochloropsis gaditana|type=CDS|length=6690bp|location=Sequence derived from alignment at CM002458.1:932646..934557+ (Nannochloropsis gaditana)
ATGGACGATGGGGCTTTCGAAGCCTTTGCGTCGTGTCGCTTTGGGGACGC
AGCGCGTTTGGCCGCCGCAGAACTTGCTTCTCAGGGGAAAGAGCAGCTCG
ACCGGAAAGAGGATAGTCCTTTTTCGATGAATGCAAGGGATGAAAGTACT
TTTCTACCTTGCGCGCCGTGGAActgggaaggcgatgggcgtACGGATGA
GCGACGCATACTTATTAGACTTGAGGAGCATTGTCGAAGGCAAGACTTCC
CGGGGGAAAGCGAGACTGCGGAAAGCGAACTGATTGTCCGCAGTCGTTTG
TGTGCATTCCTTGCACAACGTTTTATACTAGTTGCCATGCTTTCCATCCT
TCTGCAATGCGCCTTTGAGctcaaggaagaagagcaggaacGCCTCTTCA
TCAAGCACTACACTACTCAAAAAAatattcctctccctgttGCTCTCATT
TGGCTTCGAGTTTGTCTGACGAAGGGCCGCTTCTGGAATGAGGCGGTGCG
ACGAGCGGTAACGCAATTGCTTGCAGCGTTACACACTGAAATACATTTAA
TGCTGCCCAACGGTATCAATGGAACGAAGTCGCCATCTAAAGTATCGGAA
TTTTCGCATCCTCTCGAAGGACATGCGCAACCAGCACTTACAAGAGTACG
GTCGGATTCATACCTGGAAGACGGCGTGCGACAGGCACTTGTAGACGCCT
GCCGAGCCGCTATCAAAAGGCAACGGATCTTAATGCGCCAAAATGCCCGT
GGAaatggaaagagaggagagactCAAAGCTTGAAACATTCGACGCATCC
GGCTCCCTCAACTTTCCCGGCTTCGTGCAAGAGGGGCAACccaccgtcct
ccccacAGTCAAGCTCAGGGGATGTCTGGTCACAGTCCTTGTCAGACAGA
GTCCTGAATGCATTTGGGATTAAGCGGGAGGACGTTGACCAACAAAATTC
GCCATTTCAAGAGGATTCTCATCGCACCAGGACTAGTGACGAAGGAGACA
GATGTCCCAGCACACACAGGGCAACTGGAGGTAGAGCGGGACAGAGCTGG
AAACATGAACAGGACGGAGAAACATGCCCGGATTCGAACTCGGGGAACTC
ATGTATTCTTTCACGGCCTCTTTTTGTGCTCCAGGGTGGTAGGATCATGA
GGCGGATGattacctcctctccttacCAGGTCCTGATCAGCGTTCTTGGT
TTTGTTATCATAGTTCTGGGATACTCCATCAGACGAGGTTTGAGACTGGG
AAACCGCCCATTCAAGCGATTCATTACGCGGGTTTTGCAACGAGCCGTGG
TAATTCTCTGGTTGGTGGGTGGCAAGAGAGAGGcttgaATGGACGATGGG
GCTTTCGAAGCCTTTGCGTCGTGTCGCTTTGGGGACGCAGCGCGTTTGGC
CGCCGCAGAACTTGCTTCTCAGGGGAAAGAGCAGCTCGACCGGAAAGAGG
ATAGTCCTTTTTCGATGAATGCAAGGGATGAAAGTACTTTTCTACCTTGC
GCGCCGTGGAActgggaaggcgatgggcgtACGGATGAGCGACGCATACT
TATTAGACTTGAGGAGCATTGTCGAAGGCAAGACTTCCCGGGGGAAAGCG
AGACTGCGGAAAGCGAACTGATTGTCCGCAGTCGTTTGTGTGCATTCCTT
GCACAACGTTTTATACTAGTTGCCATGCTTTCCATCCTTCTGCAATGCGC
CTTTGAGctcaaggaagaagagcaggaacGCCTCTTCATCAAGCACTACA
CTACTCAAAAAAatattcctctccctgttGCTCTCATTTGGCTTCGAGTT
TGTCTGACGAAGGGCCGCTTCTGGAATGAGGCGGTGCGACGAGCGGTAAC
GCAATTGCTTGCAGCGTTACACACTGAAATACATTTAATGCTGCCCAACG
GTATCAATGGAACGAAGTCGCCATCTAAAGTATCGGAATTTTCGCATCCT
CTCGAAGGACATGCGCAACCAGCACTTACAAGAGTACGGTCGGATTCATA
CCTGGAAGACGGCGTGCGACAGGCACTTGTAGACGCCTGCCGAGCCGCTA
TCAAAAGGCAACGGATCTTAATGCGCCAAAATGCCCGTGGAaatggaaag
agaggagagactCAAAGCTTGAAACATTCGACGCATCCGGCTCCCTCAAC
TTTCCCGGCTTCGTGCAAGAGGGGCAACccaccgtcctccccacAGTCAA
GCTCAGGGGATGTCTGGTCACAGTCCTTGTCAGACAGAGTCCTGAATGCA
TTTGGGATTAAGCGGGAGGACGTTGACCAACAAAATTCGCCATTTCAAGA
GGATTCTCATCGCACCAGGACTAGTGACGAAGGAGACAGATGTCCCAGCA
CACACAGGGCAACTGGAGGTAGAGCGGGACAGAGCTGGAAACATGAACAG
GACGGAGAAACATGCCCGGATTCGAACTCGGGGAACTCATGTATTCTTTC
ACGGCCTCTTTTTGTGCTCCAGGGTGGTAGGATCATGAGGCGGATGatta
cctcctctccttacCAGGTCCTGATCAGCGTTCTTGGTTTTGTTATCATA
GTTCTGGGATACTCCATCAGACGAGGTTTGAGACTGGGAAACCGCCCATT
CAAGCGATTCATTACGCGGGTTTTGCAACGAGCCGTGGTAATTCTCTGGT
TGGTGGGTGGCAAGAGAGAGGcttgaATGGACGATGGGGCTTTCGAAGCC
TTTGCGTCGTGTCGCTTTGGGGACGCAGCGCGTTTGGCCGCCGCAGAACT
TGCTTCTCAGGGGAAAGAGCAGCTCGACCGGAAAGAGGATAGTCCTTTTT
CGATGAATGCAAGGGATGAAAGTACTTTTCTACCTTGCGCGCCGTGGAAc
tgggaaggcgatgggcgtACGGATGAGCGACGCATACTTATTAGACTTGA
GGAGCATTGTCGAAGGCAAGACTTCCCGGGGGAAAGCGAGACTGCGGAAA
GCGAACTGATTGTCCGCAGTCGTTTGTGTGCATTCCTTGCACAACGTTTT
ATACTAGTTGCCATGCTTTCCATCCTTCTGCAATGCGCCTTTGAGctcaa
ggaagaagagcaggaacGCCTCTTCATCAAGCACTACACTACTCAAAAAA
atattcctctccctgttGCTCTCATTTGGCTTCGAGTTTGTCTGACGAAG
GGCCGCTTCTGGAATGAGGCGGTGCGACGAGCGGTAACGCAATTGCTTGC
AGCGTTACACACTGAAATACATTTAATGCTGCCCAACGGTATCAATGGAA
CGAAGTCGCCATCTAAAGTATCGGAATTTTCGCATCCTCTCGAAGGACAT
GCGCAACCAGCACTTACAAGAGTACGGTCGGATTCATACCTGGAAGACGG
CGTGCGACAGGCACTTGTAGACGCCTGCCGAGCCGCTATCAAAAGGCAAC
GGATCTTAATGCGCCAAAATGCCCGTGGAaatggaaagagaggagagact
CAAAGCTTGAAACATTCGACGCATCCGGCTCCCTCAACTTTCCCGGCTTC
GTGCAAGAGGGGCAACccaccgtcctccccacAGTCAAGCTCAGGGGATG
TCTGGTCACAGTCCTTGTCAGACAGAGTCCTGAATGCATTTGGGATTAAG
CGGGAGGACGTTGACCAACAAAATTCGCCATTTCAAGAGGATTCTCATCG
CACCAGGACTAGTGACGAAGGAGACAGATGTCCCAGCACACACAGGGCAA
CTGGAGGTAGAGCGGGACAGAGCTGGAAACATGAACAGGACGGAGAAACA
TGCCCGGATTCGAACTCGGGGAACTCATGTATTCTTTCACGGCCTCTTTT
TGTGCTCCAGGGTGGTAGGATCATGAGGCGGATGattacctcctctcctt
acCAGGTCCTGATCAGCGTTCTTGGTTTTGTTATCATAGTTCTGGGATAC
TCCATCAGACGAGGTTTGAGACTGGGAAACCGCCCATTCAAGCGATTCAT
TACGCGGGTTTTGCAACGAGCCGTGGTAATTCTCTGGTTGGTGGGTGGCA
AGAGAGAGGcttgaATGGACGATGGGGCTTTCGAAGCCTTTGCGTCGTGT
CGCTTTGGGGACGCAGCGCGTTTGGCCGCCGCAGAACTTGCTTCTCAGGG
GAAAGAGCAGCTCGACCGGAAAGAGGATAGTCCTTTTTCGATGAATGCAA
GGGATGAAAGTACTTTTCTACCTTGCGCGCCGTGGAActgggaaggcgat
gggcgtACGGATGAGCGACGCATACTTATTAGACTTGAGGAGCATTGTCG
AAGGCAAGACTTCCCGGGGGAAAGCGAGACTGCGGAAAGCGAACTGATTG
TCCGCAGTCGTTTGTGTGCATTCCTTGCACAACGTTTTATACTAGTTGCC
ATGCTTTCCATCCTTCTGCAATGCGCCTTTGAGctcaaggaagaagagca
ggaacGCCTCTTCATCAAGCACTACACTACTCAAAAAAatattcctctcc
ctgttGCTCTCATTTGGCTTCGAGTTTGTCTGACGAAGGGCCGCTTCTGG
AATGAGGCGGTGCGACGAGCGGTAACGCAATTGCTTGCAGCGTTACACAC
TGAAATACATTTAATGCTGCCCAACGGTATCAATGGAACGAAGTCGCCAT
CTAAAGTATCGGAATTTTCGCATCCTCTCGAAGGACATGCGCAACCAGCA
CTTACAAGAGTACGGTCGGATTCATACCTGGAAGACGGCGTGCGACAGGC
ACTTGTAGACGCCTGCCGAGCCGCTATCAAAAGGCAACGGATCTTAATGC
GCCAAAATGCCCGTGGAaatggaaagagaggagagactCAAAGCTTGAAA
CATTCGACGCATCCGGCTCCCTCAACTTTCCCGGCTTCGTGCAAGAGGGG
CAACccaccgtcctccccacAGTCAAGCTCAGGGGATGTCTGGTCACAGT
CCTTGTCAGACAGAGTCCTGAATGCATTTGGGATTAAGCGGGAGGACGTT
GACCAACAAAATTCGCCATTTCAAGAGGATTCTCATCGCACCAGGACTAG
TGACGAAGGAGACAGATGTCCCAGCACACACAGGGCAACTGGAGGTAGAG
CGGGACAGAGCTGGAAACATGAACAGGACGGAGAAACATGCCCGGATTCG
AACTCGGGGAACTCATGTATTCTTTCACGGCCTCTTTTTGTGCTCCAGGG
TGGTAGGATCATGAGGCGGATGattacctcctctccttacCAGGTCCTGA
TCAGCGTTCTTGGTTTTGTTATCATAGTTCTGGGATACTCCATCAGACGA
GGTTTGAGACTGGGAAACCGCCCATTCAAGCGATTCATTACGCGGGTTTT
GCAACGAGCCGTGGTAATTCTCTGGTTGGTGGGTGGCAAGAGAGAGGctt
gaATGGACGATGGGGCTTTCGAAGCCTTTGCGTCGTGTCGCTTTGGGGAC
GCAGCGCGTTTGGCCGCCGCAGAACTTGCTTCTCAGGGGAAAGAGCAGCT
CGACCGGAAAGAGGATAGTCCTTTTTCGATGAATGCAAGGGATGAAAGTA
CTTTTCTACCTTGCGCGCCGTGGAActgggaaggcgatgggcgtACGGAT
GAGCGACGCATACTTATTAGACTTGAGGAGCATTGTCGAAGGCAAGACTT
CCCGGGGGAAAGCGAGACTGCGGAAAGCGAACTGATTGTCCGCAGTCGTT
TGTGTGCATTCCTTGCACAACGTTTTATACTAGTTGCCATGCTTTCCATC
CTTCTGCAATGCGCCTTTGAGctcaaggaagaagagcaggaacGCCTCTT
CATCAAGCACTACACTACTCAAAAAAatattcctctccctgttGCTCTCA
TTTGGCTTCGAGTTTGTCTGACGAAGGGCCGCTTCTGGAATGAGGCGGTG
CGACGAGCGGTAACGCAATTGCTTGCAGCGTTACACACTGAAATACATTT
AATGCTGCCCAACGGTATCAATGGAACGAAGTCGCCATCTAAAGTATCGG
AATTTTCGCATCCTCTCGAAGGACATGCGCAACCAGCACTTACAAGAGTA
CGGTCGGATTCATACCTGGAAGACGGCGTGCGACAGGCACTTGTAGACGC
CTGCCGAGCCGCTATCAAAAGGCAACGGATCTTAATGCGCCAAAATGCCC
GTGGAaatggaaagagaggagagactCAAAGCTTGAAACATTCGACGCAT
CCGGCTCCCTCAACTTTCCCGGCTTCGTGCAAGAGGGGCAACccaccgtc
ctccccacAGTCAAGCTCAGGGGATGTCTGGTCACAGTCCTTGTCAGACA
GAGTCCTGAATGCATTTGGGATTAAGCGGGAGGACGTTGACCAACAAAAT
TCGCCATTTCAAGAGGATTCTCATCGCACCAGGACTAGTGACGAAGGAGA
CAGATGTCCCAGCACACACAGGGCAACTGGAGGTAGAGCGGGACAGAGCT
GGAAACATGAACAGGACGGAGAAACATGCCCGGATTCGAACTCGGGGAAC
TCATGTATTCTTTCACGGCCTCTTTTTGTGCTCCAGGGTGGTAGGATCAT
GAGGCGGATGattacctcctctccttacCAGGTCCTGATCAGCGTTCTTG
GTTTTGTTATCATAGTTCTGGGATACTCCATCAGACGAGGTTTGAGACTG
GGAAACCGCCCATTCAAGCGATTCATTACGCGGGTTTTGCAACGAGCCGT
GGTAATTCTCTGGTTGGTGGGTGGCAAGAGAGAGGcttga back to top
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