EWM28524.1, cds2115 (CDS) Nannochloropsis gaditana

Overview
NameEWM28524.1
Unique Namecds2115
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:932646..932988 +
Alignment locationCM002458.1:933080..933188 +
Alignment locationCM002458.1:933395..933561 +
Alignment locationCM002458.1:933742..933806 +
Alignment locationCM002458.1:933904..934557 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28524.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g38.567.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:932646..932988 +
CM002458.1supercontigCM002458.1:933080..933188 +
CM002458.1supercontigCM002458.1:933395..933561 +
CM002458.1supercontigCM002458.1:933742..933806 +
CM002458.1supercontigCM002458.1:933904..934557 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28524.1 vs. NCBI_GenBank
Match: gi|585110942|gb|EWM28524.1| (hypothetical protein Naga_100009g38 [Nannochloropsis gaditana])

HSP 1 Score: 917.531 bits (2370), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0 
Query:    1 MDDGAFEAFASCRFGDAARLAAAELASQGKEQLDRKEDSPFSMNARDESTFLPCAPWNWEGDGRTDERRILIRLEEHCRRQDFPGESETAESELIVRSRLCAFLAQRFILVAMLSILLQCAFELKEEEQERLFIKHYTTQKNIPLPVALIWLRVCLTKGRFWNEAVRRAVTQLLAALHTEIHLMLPNGINGTKSPSKVSEFSHPLEGHAQPALTRVRSDSYLEDGVRQALVDACRAAIKRQRILMRQNARGNGKRGETQSLKHSTHPAPSTFPASCKRGNPPSSPQSSSGDVWSQSLSDRVLNAFGIKREDVDQQNSPFQEDSHRTRTSDEGDRCPSTHRATGGRAGQSWKHEQDGETCPDSNSGNSCILSRPLFVLQGGRIMRRMITSSPYQVLISVLGFVIIVLGYSIRRGLRLGNRPFKRFITRVLQRAVVILWLVGGKREA 445
            MDDGAFEAFASCRFGDAARLAAAELASQGKEQLDRKEDSPFSMNARDESTFLPCAPWNWEGDGRTDERRILIRLEEHCRRQDFPGESETAESELIVRSRLCAFLAQRFILVAMLSILLQCAFELKEEEQERLFIKHYTTQKNIPLPVALIWLRVCLTKGRFWNEAVRRAVTQLLAALHTEIHLMLPNGINGTKSPSKVSEFSHPLEGHAQPALTRVRSDSYLEDGVRQALVDACRAAIKRQRILMRQNARGNGKRGETQSLKHSTHPAPSTFPASCKRGNPPSSPQSSSGDVWSQSLSDRVLNAFGIKREDVDQQNSPFQEDSHRTRTSDEGDRCPSTHRATGGRAGQSWKHEQDGETCPDSNSGNSCILSRPLFVLQGGRIMRRMITSSPYQVLISVLGFVIIVLGYSIRRGLRLGNRPFKRFITRVLQRAVVILWLVGGKREA
Sbjct:    1 MDDGAFEAFASCRFGDAARLAAAELASQGKEQLDRKEDSPFSMNARDESTFLPCAPWNWEGDGRTDERRILIRLEEHCRRQDFPGESETAESELIVRSRLCAFLAQRFILVAMLSILLQCAFELKEEEQERLFIKHYTTQKNIPLPVALIWLRVCLTKGRFWNEAVRRAVTQLLAALHTEIHLMLPNGINGTKSPSKVSEFSHPLEGHAQPALTRVRSDSYLEDGVRQALVDACRAAIKRQRILMRQNARGNGKRGETQSLKHSTHPAPSTFPASCKRGNPPSSPQSSSGDVWSQSLSDRVLNAFGIKREDVDQQNSPFQEDSHRTRTSDEGDRCPSTHRATGGRAGQSWKHEQDGETCPDSNSGNSCILSRPLFVLQGGRIMRRMITSSPYQVLISVLGFVIIVLGYSIRRGLRLGNRPFKRFITRVLQRAVVILWLVGGKREA 445
[Close]
BLAST of EWM28524.1 vs. NCBI_GenBank
Match: gi|553188848|ref|XP_005854880.1| (hypothetical protein NGA_0378200, partial [Nannochloropsis gaditana CCMP526] >gi|422294188|gb|EKU21488.1| hypothetical protein NGA_0378200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 380.563 bits (976), Expect = 1.970e-129
Identity = 182/185 (98.38%), Postives = 185/185 (100.00%), Query Frame = 0 
Query:  245 MRQNARGNGKRGETQSLKHSTHPAPSTFPASCKRGNPPSSPQSSSGDVWSQSLSDRVLNAFGIKREDVDQQNSPFQEDSHRTRTSDEGDRCPSTHRATGGRAGQSWKHEQDGETCPDSNSGNSCILSRPLFVLQGGRIMRRMITSSPYQVLISVLGFVIIVLGYSIRRGLRLGNRPFKRFITRVL 429
            MRQNARGNGKRGETQSLKHSTHPAPSTFPASCKRGNPPSSPQSSSGDVWSQSLSDRVLNAFGIKREDVDQQNSPFQEDSHRTRTSDEGDRCPSTHRATGG+AGQSW+HEQDGETCPDSNSGNSCILSRPLFVLQGGRIMRRMI+SSPYQVLISVLGFVIIVLGYSIRRGLRLGNRPFKRFITRVL
Sbjct:    1 MRQNARGNGKRGETQSLKHSTHPAPSTFPASCKRGNPPSSPQSSSGDVWSQSLSDRVLNAFGIKREDVDQQNSPFQEDSHRTRTSDEGDRCPSTHRATGGKAGQSWQHEQDGETCPDSNSGNSCILSRPLFVLQGGRIMRRMISSSPYQVLISVLGFVIIVLGYSIRRGLRLGNRPFKRFITRVL 185
The following BLAST results are available for this feature:
BLAST of EWM28524.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110942|gb|EWM28524.1|0.000e+0100.00hypothetical protein Naga_100009g38 [Nannochlorops... [more]
gi|553188848|ref|XP_005854880.1|1.970e-12998.38hypothetical protein NGA_0378200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2123rna2123Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications