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Properties
| Property Name | Value |
|---|
| Product | peptidyl-prolyl cis-trans fkbp-type |
| Orig transcript id | gnl|cribi|Naga_100009g39.585.mrna |
| Orig protein id | gnl|cribi|Naga_100009g39.585 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:930961..932610 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2122 ID=rna2122|Name=rna2122|organism=Nannochloropsis gaditana|type=mRNA|length=1224bp
GTGACTGTAAATAAAATGTATTCTCGATTAGGAAGAGGTGGCGATACACG
GTTCTCGATCCTGCGTTTGACGTATCATCGCTTGTTGTGTTGAACATGGC
TGAGTGCAGGGGGGTTTCCTAGCTATCAAGTTAAAAATTTACCAACTCCA
ACAAATTGAAGCCTTACCTTTCATTTTTTTTGCACAATGTTCTCTCCAGA
ATTGAGAAACTATTAACGCCGTAACTATTCAGGTAGCTATGGAGCCATCG
CTGGCGTCAGGCCCCCATCGCAGACGCCGTGACGGCATAGTGCCGCATTT
TTTTGGGTGCCTCGTTCTCTTCTTTACCATTTGTGCATCAAATGTACTCT
GTTTTCGTGTGAAACCTTGTATTGCGCGGGATACCAGTCGAAATGTTCGA
CGAGCATGCAGGCGACCGACCCCCTCAAGAGGAGGTGGTGAAGATGTGGA
TAGGATGGACGCATTGAAAACAGCTGGAATGGTCGCTACTGCAGGAGGAC
TAGCCATCGGTGGTCTACCCAATCTGGTCGAGGCTAAAAAGATTATAAAT
TTGGAAGAAGCTCGGGAGCTGGGGGAAAAGAAAATGATAGATATTGAAAA
AGCGAAGGGGCCCTTGATCAAGGTGCGGGACAACGTCAAATATCGGGAAG
AACTCATCGGTAAGGGCGACATTTTCAAAGCGGGGGACCTGGTCAAGATC
CGCTACCAAGTGTACAAGGGCAACGGAGACTACATGTTCAGCACGGGGTA
CGGCCGCGAGTTCCAGAACGACGTAGGCGACACCTACGATTTCACTTTTG
GTCGGCCCAACTCCATCCCCAAAGGCGCCGAGATCGGTATGGAGGGCATG
CGCGTGGGCGGCAAACGCAAGATCTCCGTCCCTCCCGAGCTAGGATGGCA
GACATCTGGCGGTTTCCCGGAACCCCAAACCTTCGGGGGAAAAAGAAAAT
TGCTGAATCACATGAACGAGTTCTTGCAGTTCGAGGTGGAGGTGATCCGT
GTTCGGCCAAAGAAGACATGAAGAGGGATGGAAAGTCCGTCTGGAGCGTA
ATTTGGCAGCTTTACGGGGGCACGCACATCTATGTTTTCGAACGAAGGAT
TGCAAATCAGGTAGCGATAAGTTAGTGAATTGACAAAGAATTACTGACGA
GTAATAAGAAACGCGTGACGCCTGTTGACATGATGTGCCTCACACCGCAA
AATAAGCTTTAGGTCCTGGCATCT back to topprotein sequence of rna2122 >rna2122-protein ID=rna2122-protein|Name=rna2122|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTS
RNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAK
KIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGD
LVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGTWAPH
TIPRA back to topmRNA from alignment at CM002458.1:930961..932610- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2122 ID=rna2122|Name=rna2122|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp|location=Sequence derived from alignment at CM002458.1:930961..932610- (Nannochloropsis gaditana)
GTGACTGTAAATAAAATGTATTCTCGATTAGGAAGAGGTGGCGATACACG
GTTCTCGATCCTGCGTTTGACGTATCATCGCTTGTTGTGTTGAACATGGC
TGAGTGCAGGGGGGTTTCCTAGCTATCAAGTTAAAAATTTACCAACTCCA
ACAAATTGAAGCCTTACCTTTCATTTTTTTTGCACAATGTTCTCTCCAGA
ATTGAGAAACTATTAACGCCGTAACTATTCAGGTAGCTATGGAGCCATCG
CTGGCGTCAGGCCCCCATCGCAGACGCCGTGACGGCATAGTGCCGCATTT
TTTTGGGTGCCTCGTTCTCTTCTTTACCATTTGTGCATCAAATGTACTCT
GTTTTCGTGTGAAACCTTGTATTGCGCGGGATACCAGTCGAAATGTTCGA
CGAGCATGCAGGCGACCGACCCCCTCAAGAGGAGGTGGTGAAGATGTGGA
TAGGATGGACGCATTGAAAACAGCTGGAATGGTCGCTACTGCAGGAGGAC
TAGCCATCGGTGGTCTACCCAATCTGGTCGAGGCTAAAAAGATTATAAAT
TTGGAAGAAGCTCGGGAGCTGGGGGAAAAGAAAATGATAGATATTGAAAA
AGCGAAGGGGCCCTTGATCAAGGTAATGCTTAGGTTCCCTTCAAATTATG
ATAGAGGTCGACAATTATCTCTCTTATAAGCTGGCATTGAGCCAGCTTTT
TATGGGTATAGAACATGATGAGCTTCACCAGCGTCGCTGGGCTCCTTTCG
TGGCATTCCTGTTAGCCGCCTATTATCCGTAACTTCTCCTTCCTTTTCCC
ATGTCACATTTCTCAGGTGCGGGACAACGTCAAATATCGGGAAGAACTCA
TCGGTAAGGGCGACATTTTCAAAGCGGGGGACCTGGTCAAGATCCGCTAC
CAAGTGTACAAGGGCAACGGAGACTACATGTTCAGCACGGGGTACGGCCG
CGAGTTCCAGAACGACGTAGGCGGTAGGTCTCCCATGGAATGCTGGGTCG
ACATGGGCCACCAAGGGACGTGGGCGCCACATACCATACCGCGGGCGTGA
AAGGCGTGTGGATGGAGGAATGGAGACAAGGGGGGGCGCAATCTCCTCGG
CTCGTTGCACGCGACCGTCTGAGTGTCGTGCTGACGTGATCTCTTTCCCG
CCCTTCAATCCTCCTCCCGCTCATTCGTCCCACTCCCACCTGTTCCCACC
CCCAGACACCTACGATTTCACTTTTGGTCGGCCCAACTCCATCCCCAAAG
GCGCCGAGATCGGTATGGAGGGCATGCGCGTGGGCGGCAAACGCAAGATC
TCCGTCCCTCCCGAGCTAGGATGGCAGACATCTGGCGGTTTCCCGGAACC
CCAAACCTTCGGGGGAAAAAGAAAATTGCTGAATCACATGAACGAGTTCT
TGCAGTTCGAGGTGGAGGTGATCCGTGTTCGGCCAAAGAAGACATGAAGA
GGGATGGAAAGTCCGTCTGGAGCGTAATTTGGCAGCTTTACGGGGGCACG
CACATCTATGTTTTCGAACGAAGGATTGCAAATCAGGTAGCGATAAGTTA
GTGAATTGACAAAGAATTACTGACGAGTAATAAGAAACGCGTGACGCCTG
TTGACATGATGTGCCTCACACCGCAAAATAAGCTTTAGGTCCTGGCATCT
back to topCoding sequence (CDS) from alignment at CM002458.1:930961..932610- >rna2122 ID=rna2122|Name=rna2122|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002458.1:930961..932610- (Nannochloropsis gaditana)
GTGCGGGACAACGTCAAATATCGGGAAGAACTCATCGGTAAGGGCGACAT
TTTCAAAGCGGGGGACCTGGTCAAGATCCGCTACCAAGTGTACAAGGGCA
ACGGAGACTACATGTTCAGCACGGGGTACGGCCGCGAGTTCCAGAACGAC
GTAGGCGGTAGGTCTCCCATGGAATGCTGGGTCGACATGGGCCACCAAGG
GACGTGGGCGCCACATACCATACCGCGGGCGTGAATGGAGCCATCGCTGG
CGTCAGGCCCCCATCGCAGACGCCGTGACGGCATAGTGCCGCATTTTTTT
GGGTGCCTCGTTCTCTTCTTTACCATTTGTGCATCAAATGTACTCTGTTT
TCGTGTGAAACCTTGTATTGCGCGGGATACCAGTCGAAATGTTCGACGAG
CATGCAGGCGACCGACCCCCTCAAGAGGAGGTGGTGAAGATGTGGATAGG
ATGGACGCATTGAAAACAGCTGGAATGGTCGCTACTGCAGGAGGACTAGC
CATCGGTGGTCTACCCAATCTGGTCGAGGCTAAAAAGATTATAAATTTGG
AAGAAGCTCGGGAGCTGGGGGAAAAGAAAATGATAGATATTGAAAAAGCG
AAGGGGCCCTTGATCAAGGTGCGGGACAACGTCAAATATCGGGAAGAACT
CATCGGTAAGGGCGACATTTTCAAAGCGGGGGACCTGGTCAAGATCCGCT
ACCAAGTGTACAAGGGCAACGGAGACTACATGTTCAGCACGGGGTACGGC
CGCGAGTTCCAGAACGACGTAGGCGGTAGGTCTCCCATGGAATGCTGGGT
CGACATGGGCCACCAAGGGACGTGGGCGCCACATACCATACCGCGGGCGT
GAATGGAGCCATCGCTGGCGTCAGGCCCCCATCGCAGACGCCGTGACGGC
ATAGTGCCGCATTTTTTTGGGTGCCTCGTTCTCTTCTTTACCATTTGTGC
ATCAAATGTACTCTGTTTTCGTGTGAAACCTTGTATTGCGCGGGATACCA
GTCGAAATGTTCGACGAGCATGCAGGCGACCGACCCCCTCAAGAGGAGGT
GGTGAAGATGTGGATAGGATGGACGCATTGAAAACAGCTGGAATGGTCGC
TACTGCAGGAGGACTAGCCATCGGTGGTCTACCCAATCTGGTCGAGGCTA
AAAAGATTATAAATTTGGAAGAAGCTCGGGAGCTGGGGGAAAAGAAAATG
ATAGATATTGAAAAAGCGAAGGGGCCCTTGATCAAG back to top
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