EWM28542.1, cds2114 (CDS) Nannochloropsis gaditana

Overview
NameEWM28542.1
Unique Namecds2114
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:931989..932372 -
Alignment locationCM002458.1:931561..931794 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28542.1
Productpeptidyl-prolyl cis-trans fkbp-type
Orig transcript idgnl|cribi|Naga_100009g39.585.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:931989..932372 -
CM002458.1supercontigCM002458.1:931561..931794 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|585110960|gb|EWM28542.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 423.705 bits (1088), Expect = 3.874e-150
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGTWAPHTIPRA 205
            MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGTWAPHTIPRA
Sbjct:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGTWAPHTIPRA 205          
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|585110959|gb|EWM28541.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 365.925 bits (938), Expect = 1.836e-126
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
            MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG
Sbjct:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180          
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|553188821|ref|XP_005854871.1| (hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526] >gi|422294179|gb|EKU21479.1| hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 363.999 bits (933), Expect = 1.183e-125
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
            MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSR+VRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG
Sbjct:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRDVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180          
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|873242458|emb|CEL91697.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 94.7449 bits (234), Expect = 3.222e-20
Identity = 62/162 (38.27%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   27 LFFTICASNVLCFRVKPCIARDTSRNVRRAC-----RRPT---PSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGD--IFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQND 178
             +  + A NV+   V    A   S   RR+      RRP    PS        R   L +A +  TA  L +      V     +++EEARE+GE+K    E AKGPL++    V+YRE + G  D  + + GD  K++YQVYKGNGDY+FS GYGREF+ D
Sbjct:    4 FWIFLLAFNVIFILVIDIHAFSISHLHRRSPHPPHRRRPAATLPSTSMSAASTRRSHLSSAAVALTASLLPLAA----VAKSPPLSIEEAREIGERKREAEEAAKGPLLRSSKGVRYREPVKGPSDAPLCEKGDTCKVKYQVYKGNGDYVFSLGYGREFKQD 161          
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|1026768918|gb|OAE28947.1| (hypothetical protein AXG93_2960s1260 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 66.2402 bits (160), Expect = 1.025e-9
Identity = 49/151 (32.45%), Postives = 74/151 (49.01%), Query Frame = 0
Query:   44 CIARDTSRNVRR------ACRRPTPSRGGGEDVD----RMDALKTAGMVATAGGLAIGGLPNLVEAKKII----NLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
            C A   SR +RR      A      S G  +DV+    R  + +    +    GL++  L + +   + +    N+++AR+ GEK   + E A+GP+I     +KYRE   G G     GD V I Y + + NG Y+ S GYG+E +NDVG
Sbjct:   17 CSAASDSRGLRRRSSASGAILVSRSSIGNAQDVEANSSRFASRRQVIFLVAGAGLSMAPLHSALAGTEKVTLYSNIDDARKAGEKLREEKEAAEGPVIVSSTGIKYRELERGTGRPVATGDAVSIYYTISRLNGYYLDSMGYGKEGKNDVG 167          
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|971515230|dbj|GAQ82985.1| (FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Klebsormidium nitens])

HSP 1 Score: 58.5362 bits (140), Expect = 2.821e-7
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  125 PLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGT 196
            P++K+   VKYRE  +G G+  + GDLV + Y +Y+ +G Y+ S GYG+E ++DVG     E       QG 
Sbjct:   45 PIVKLPSGVKYRELAVGTGEALRPGDLVSVYYTIYRLSGLYIDSVGYGKEGKDDVGDAFTFELGAGQVPQGV 116          
The following BLAST results are available for this feature:
BLAST of EWM28542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585110960|gb|EWM28542.1|3.874e-150100.00peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
gi|585110959|gb|EWM28541.1|1.836e-126100.00peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
gi|553188821|ref|XP_005854871.1|1.183e-12599.44hypothetical protein NGA_0377200 [Nannochloropsis ... [more]
gi|873242458|emb|CEL91697.1|3.222e-2038.27unnamed protein product [Vitrella brassicaformis C... [more]
gi|1026768918|gb|OAE28947.1|1.025e-932.45hypothetical protein AXG93_2960s1260 [Marchantia p... [more]
gi|971515230|dbj|GAQ82985.1|2.821e-738.89FKBP-type peptidyl-prolyl cis-trans isomerase fami... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2122rna2122Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications