EWM28542.1, cds2114 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|585110960|gb|EWM28542.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana]) HSP 1 Score: 423.705 bits (1088), Expect = 3.874e-150 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGTWAPHTIPRA 205
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGTWAPHTIPRA
Sbjct: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGTWAPHTIPRA 205
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|585110959|gb|EWM28541.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana]) HSP 1 Score: 365.925 bits (938), Expect = 1.836e-126 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG
Sbjct: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|553188821|ref|XP_005854871.1| (hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526] >gi|422294179|gb|EKU21479.1| hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 363.999 bits (933), Expect = 1.183e-125 Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSR+VRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG
Sbjct: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRDVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|873242458|emb|CEL91697.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 94.7449 bits (234), Expect = 3.222e-20 Identity = 62/162 (38.27%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 27 LFFTICASNVLCFRVKPCIARDTSRNVRRAC-----RRPT---PSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGD--IFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQND 178
+ + A NV+ V A S RR+ RRP PS R L +A + TA L + V +++EEARE+GE+K E AKGPL++ V+YRE + G D + + GD K++YQVYKGNGDY+FS GYGREF+ D
Sbjct: 4 FWIFLLAFNVIFILVIDIHAFSISHLHRRSPHPPHRRRPAATLPSTSMSAASTRRSHLSSAAVALTASLLPLAA----VAKSPPLSIEEAREIGERKREAEEAAKGPLLRSSKGVRYREPVKGPSDAPLCEKGDTCKVKYQVYKGNGDYVFSLGYGREFKQD 161
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|1026768918|gb|OAE28947.1| (hypothetical protein AXG93_2960s1260 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 66.2402 bits (160), Expect = 1.025e-9 Identity = 49/151 (32.45%), Postives = 74/151 (49.01%), Query Frame = 0
Query: 44 CIARDTSRNVRR------ACRRPTPSRGGGEDVD----RMDALKTAGMVATAGGLAIGGLPNLVEAKKII----NLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
C A SR +RR A S G +DV+ R + + + GL++ L + + + + N+++AR+ GEK + E A+GP+I +KYRE G G GD V I Y + + NG Y+ S GYG+E +NDVG
Sbjct: 17 CSAASDSRGLRRRSSASGAILVSRSSIGNAQDVEANSSRFASRRQVIFLVAGAGLSMAPLHSALAGTEKVTLYSNIDDARKAGEKLREEKEAAEGPVIVSSTGIKYRELERGTGRPVATGDAVSIYYTISRLNGYYLDSMGYGKEGKNDVG 167
BLAST of EWM28542.1 vs. NCBI_GenBank
Match: gi|971515230|dbj|GAQ82985.1| (FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Klebsormidium nitens]) HSP 1 Score: 58.5362 bits (140), Expect = 2.821e-7 Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 0
Query: 125 PLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGGRSPMECWVDMGHQGT 196
P++K+ VKYRE +G G+ + GDLV + Y +Y+ +G Y+ S GYG+E ++DVG E QG
Sbjct: 45 PIVKLPSGVKYRELAVGTGEALRPGDLVSVYYTIYRLSGLYIDSVGYGKEGKDDVGDAFTFELGAGQVPQGV 116 The following BLAST results are available for this feature:
BLAST of EWM28542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|