rna2121, rna2121 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2121
Unique Name	rna2121
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1466
Alignment location	CM002458.1:930961..932610 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans fkbp-type
Orig transcript id	gnl\|cribi\|Naga_100009g39.584.mrna
Orig protein id	gnl\|cribi\|Naga_100009g39.584
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:930961..932610 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g39	gene2026	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2121	rna2121-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28541.1	cds2113	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:930961..932610-
coding sequence from alignment at CM002458.1:930961..932610-

mRNA sequence

>rna2121 ID=rna2121|Name=rna2121|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp
GCGGCCTTACATTTTTACAAACACTGTATCTTACCTGCTTTCCTTACATC
AGGTAAATGACGCATGGAAATGGAACTTGAAAGGGACTGGTTGTCGGAAG
GCTACTGTAAAGGTGGTACAGGGAGAATTGGGGCCCAAGAAGAGGAGGTG
TGGGACCAGAATTGCGCCACCGATTGCGGCCATTATGGACCACAGACATC
TAAATATACCTCCTTTCAACCGCACCGAGCCATTCCAATGATTAGCTTTG
TGCGCGGTAAAACCCGGTATGCAGACCCGAAGGACGTTGATGGGGATTTC
AATCATGACAACGATCGTCATCCTGCTCCGGGCCCGGCATCAGACGACGT
GTGCCCGTCAACTTTGTACGCGGAGCTGATAGCACGGCCAGGTGAAGAGC
CCGACGTCAGTATATTAAATGATAACGATATTAGCATACTCCCGACGCGG
AAGCGGCGAAGAAGGCCCTGCGAACGACCCCAGCGAACGCCCTTGGGCTC
GAGTGCGACAGCGGCTTCATCACTGACGGGGGACCAAAATGACCGCATTG
AAGAAAATGAGAGGCCCTACTACAAAATGGTGCATGGTGAACGAAAAGCC
GTGGAACCTTGCGTAACTTTGATCTCCGCAAGCGCGAGCAGCCCCGTCAT
TTTTATCGTAGATGAGGACGACTCCGAGAAGGAGACATCTGGCCACGCCA
CCATTTCCGCCTTCGACTGCCTGGTGTGTGGCGAACGGGTGACCTCCACC
GACCGTGCTACACACGAACGAAGTACCCTTCACACATTCAACGCCAAGAA
AAGAGTTTCTTGCGGTCGTATCATGCTTCCAGAAAGCAATCGCGGCGTGC
AATTATTGGCCCGTCTGGGGTGGAAGGAGGACACGGGACTGGGCAAACAT
GCTCAGGGGTCCGTGCAGCCGGTCAAATCGATTCTGAAACTTGATCGGAC
ATGCCTAGGGCACCAGCCGCTTCCTCCTGCACGCGTGACGCATTTCCCAA
GCCACGACGCGGGGCAGGCAGCCCGAGCCCGCGATGGGAAAAGTCGGGCG
CAACGGAAAGTGGAGGAGGTCGAGCGACGAGTGCACGAAGGGAGGGCGGC
GGCCCGGGAGGGATTTGTCCTTTCCAAGAAAGGGGAGCGTTGCGAGACGG
CCAGGGGAAGAAGAAGGCGCTTGGAAAAAGAGAAAGAGAGTTGGTCGAGG
ATTTCGGCGGCCCTAAATCAGGAATAAAGAGGAATTACGCGGAAGACGCA
ATGCTCTTGTCTGTTGAGTGAGGAAGCAAAGAATGTACATAGAGATAGAT
GCCAGGACCTAAAGCTTATTTTGCGGTGTGAGGCACATCATGTCAACAGG
CGTCACGCGTTTCTTATTACTCGTCAGTAATTCTTTGTCAATTCACTAAC
TTATCGCTACCTGATTTGCAATCCTTCGTTCGAAAACATAGATGTGCGTG
CCCCCGTAAAGCTGCC

protein sequence of rna2121

>rna2121-protein ID=rna2121-protein|Name=rna2121|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTS
RNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAK
KIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGD
LVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIG
MEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEV
EVIRVRPKKT

mRNA from alignment at CM002458.1:930961..932610-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2121 ID=rna2121|Name=rna2121|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp|location=Sequence derived from alignment at CM002458.1:930961..932610- (Nannochloropsis gaditana)
GTGACTGTAAATAAAATGTATTCTCGATTAGGAAGAGGTGGCGATACACG
GTTCTCGATCCTGCGTTTGACGTATCATCGCTTGTTGTGTTGAACATGGC
TGAGTGCAGGGGGGTTTCCTAGCTATCAAGTTAAAAATTTACCAACTCCA
ACAAATTGAAGCCTTACCTTTCATTTTTTTTGCACAATGTTCTCTCCAGA
ATTGAGAAACTATTAACGCCGTAACTATTCAGGTAGCTATGGAGCCATCG
CTGGCGTCAGGCCCCCATCGCAGACGCCGTGACGGCATAGTGCCGCATTT
TTTTGGGTGCCTCGTTCTCTTCTTTACCATTTGTGCATCAAATGTACTCT
GTTTTCGTGTGAAACCTTGTATTGCGCGGGATACCAGTCGAAATGTTCGA
CGAGCATGCAGGCGACCGACCCCCTCAAGAGGAGGTGGTGAAGATGTGGA
TAGGATGGACGCATTGAAAACAGCTGGAATGGTCGCTACTGCAGGAGGAC
TAGCCATCGGTGGTCTACCCAATCTGGTCGAGGCTAAAAAGATTATAAAT
TTGGAAGAAGCTCGGGAGCTGGGGGAAAAGAAAATGATAGATATTGAAAA
AGCGAAGGGGCCCTTGATCAAGGTAATGCTTAGGTTCCCTTCAAATTATG
ATAGAGGTCGACAATTATCTCTCTTATAAGCTGGCATTGAGCCAGCTTTT
TATGGGTATAGAACATGATGAGCTTCACCAGCGTCGCTGGGCTCCTTTCG
TGGCATTCCTGTTAGCCGCCTATTATCCGTAACTTCTCCTTCCTTTTCCC
ATGTCACATTTCTCAGGTGCGGGACAACGTCAAATATCGGGAAGAACTCA
TCGGTAAGGGCGACATTTTCAAAGCGGGGGACCTGGTCAAGATCCGCTAC
CAAGTGTACAAGGGCAACGGAGACTACATGTTCAGCACGGGGTACGGCCG
CGAGTTCCAGAACGACGTAGGCGGTAGGTCTCCCATGGAATGCTGGGTCG
ACATGGGCCACCAAGGGACGTGGGCGCCACATACCATACCGCGGGCGTGA
AAGGCGTGTGGATGGAGGAATGGAGACAAGGGGGGGCGCAATCTCCTCGG
CTCGTTGCACGCGACCGTCTGAGTGTCGTGCTGACGTGATCTCTTTCCCG
CCCTTCAATCCTCCTCCCGCTCATTCGTCCCACTCCCACCTGTTCCCACC
CCCAGACACCTACGATTTCACTTTTGGTCGGCCCAACTCCATCCCCAAAG
GCGCCGAGATCGGTATGGAGGGCATGCGCGTGGGCGGCAAACGCAAGATC
TCCGTCCCTCCCGAGCTAGGATGGCAGACATCTGGCGGTTTCCCGGAACC
CCAAACCTTCGGGGGAAAAAGAAAATTGCTGAATCACATGAACGAGTTCT
TGCAGTTCGAGGTGGAGGTGATCCGTGTTCGGCCAAAGAAGACATGAAGA
GGGATGGAAAGTCCGTCTGGAGCGTAATTTGGCAGCTTTACGGGGGCACG
CACATCTATGTTTTCGAACGAAGGATTGCAAATCAGGTAGCGATAAGTTA
GTGAATTGACAAAGAATTACTGACGAGTAATAAGAAACGCGTGACGCCTG
TTGACATGATGTGCCTCACACCGCAAAATAAGCTTTAGGTCCTGGCATCT

Coding sequence (CDS) from alignment at CM002458.1:930961..932610-

>rna2121 ID=rna2121|Name=rna2121|organism=Nannochloropsis gaditana|type=CDS|length=2349bp|location=Sequence derived from alignment at CM002458.1:930961..932610- (Nannochloropsis gaditana)
ACACCTACGATTTCACTTTTGGTCGGCCCAACTCCATCCCCAAAGGCGCC
GAGATCGGTATGGAGGGCATGCGCGTGGGCGGCAAACGCAAGATCTCCGT
CCCTCCCGAGCTAGGATGGCAGACATCTGGCGGTTTCCCGGAACCCCAAA
CCTTCGGGGGAAAAAGAAAATTGCTGAATCACATGAACGAGTTCTTGCAG
TTCGAGGTGGAGGTGATCCGTGTTCGGCCAAAGAAGACATGAGTGCGGGA
CAACGTCAAATATCGGGAAGAACTCATCGGTAAGGGCGACATTTTCAAAG
CGGGGGACCTGGTCAAGATCCGCTACCAAGTGTACAAGGGCAACGGAGAC
TACATGTTCAGCACGGGGTACGGCCGCGAGTTCCAGAACGACGTAGGCGA
TGGAGCCATCGCTGGCGTCAGGCCCCCATCGCAGACGCCGTGACGGCATA
GTGCCGCATTTTTTTGGGTGCCTCGTTCTCTTCTTTACCATTTGTGCATC
AAATGTACTCTGTTTTCGTGTGAAACCTTGTATTGCGCGGGATACCAGTC
GAAATGTTCGACGAGCATGCAGGCGACCGACCCCCTCAAGAGGAGGTGGT
GAAGATGTGGATAGGATGGACGCATTGAAAACAGCTGGAATGGTCGCTAC
TGCAGGAGGACTAGCCATCGGTGGTCTACCCAATCTGGTCGAGGCTAAAA
AGATTATAAATTTGGAAGAAGCTCGGGAGCTGGGGGAAAAGAAAATGATA
GATATTGAAAAAGCGAAGGGGCCCTTGATCAAGACACCTACGATTTCACT
TTTGGTCGGCCCAACTCCATCCCCAAAGGCGCCGAGATCGGTATGGAGGG
CATGCGCGTGGGCGGCAAACGCAAGATCTCCGTCCCTCCCGAGCTAGGAT
GGCAGACATCTGGCGGTTTCCCGGAACCCCAAACCTTCGGGGGAAAAAGA
AAATTGCTGAATCACATGAACGAGTTCTTGCAGTTCGAGGTGGAGGTGAT
CCGTGTTCGGCCAAAGAAGACATGAGTGCGGGACAACGTCAAATATCGGG
AAGAACTCATCGGTAAGGGCGACATTTTCAAAGCGGGGGACCTGGTCAAG
ATCCGCTACCAAGTGTACAAGGGCAACGGAGACTACATGTTCAGCACGGG
GTACGGCCGCGAGTTCCAGAACGACGTAGGCGATGGAGCCATCGCTGGCG
TCAGGCCCCCATCGCAGACGCCGTGACGGCATAGTGCCGCATTTTTTTGG
GTGCCTCGTTCTCTTCTTTACCATTTGTGCATCAAATGTACTCTGTTTTC
GTGTGAAACCTTGTATTGCGCGGGATACCAGTCGAAATGTTCGACGAGCA
TGCAGGCGACCGACCCCCTCAAGAGGAGGTGGTGAAGATGTGGATAGGAT
GGACGCATTGAAAACAGCTGGAATGGTCGCTACTGCAGGAGGACTAGCCA
TCGGTGGTCTACCCAATCTGGTCGAGGCTAAAAAGATTATAAATTTGGAA
GAAGCTCGGGAGCTGGGGGAAAAGAAAATGATAGATATTGAAAAAGCGAA
GGGGCCCTTGATCAAGACACCTACGATTTCACTTTTGGTCGGCCCAACTC
CATCCCCAAAGGCGCCGAGATCGGTATGGAGGGCATGCGCGTGGGCGGCA
AACGCAAGATCTCCGTCCCTCCCGAGCTAGGATGGCAGACATCTGGCGGT
TTCCCGGAACCCCAAACCTTCGGGGGAAAAAGAAAATTGCTGAATCACAT
GAACGAGTTCTTGCAGTTCGAGGTGGAGGTGATCCGTGTTCGGCCAAAGA
AGACATGAGTGCGGGACAACGTCAAATATCGGGAAGAACTCATCGGTAAG
GGCGACATTTTCAAAGCGGGGGACCTGGTCAAGATCCGCTACCAAGTGTA
CAAGGGCAACGGAGACTACATGTTCAGCACGGGGTACGGCCGCGAGTTCC
AGAACGACGTAGGCGATGGAGCCATCGCTGGCGTCAGGCCCCCATCGCAG
ACGCCGTGACGGCATAGTGCCGCATTTTTTTGGGTGCCTCGTTCTCTTCT
TTACCATTTGTGCATCAAATGTACTCTGTTTTCGTGTGAAACCTTGTATT
GCGCGGGATACCAGTCGAAATGTTCGACGAGCATGCAGGCGACCGACCCC
CTCAAGAGGAGGTGGTGAAGATGTGGATAGGATGGACGCATTGAAAACAG
CTGGAATGGTCGCTACTGCAGGAGGACTAGCCATCGGTGGTCTACCCAAT
CTGGTCGAGGCTAAAAAGATTATAAATTTGGAAGAAGCTCGGGAGCTGGG
GGAAAAGAAAATGATAGATATTGAAAAAGCGAAGGGGCCCTTGATCAAG

Synonyms

Publications