EWM28541.1, cds2113 (CDS) Nannochloropsis gaditana

Overview
NameEWM28541.1
Unique Namecds2113
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:931989..932372 -
Alignment locationCM002458.1:931638..931794 -
Alignment locationCM002458.1:931164..931405 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28541.1
Productpeptidyl-prolyl cis-trans fkbp-type
Orig transcript idgnl|cribi|Naga_100009g39.584.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:931989..932372 -
CM002458.1supercontigCM002458.1:931638..931794 -
CM002458.1supercontigCM002458.1:931164..931405 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|585110959|gb|EWM28541.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
            MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT
Sbjct:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|553188821|ref|XP_005854871.1| (hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526] >gi|422294179|gb|EKU21479.1| hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 259/260 (99.62%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
            MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSR+VRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT
Sbjct:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRDVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|585110960|gb|EWM28542.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 365.925 bits (938), Expect = 2.328e-126
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
            MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG
Sbjct:    1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|873242458|emb|CEL91697.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 176.022 bits (445), Expect = 6.367e-51
Identity = 104/243 (42.80%), Postives = 133/243 (54.73%), Query Frame = 0
Query:   22 FGCLVLFFT---ICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGD--IFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNS-IPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPK 258
            F   +L F    I   ++  F +     R      RR      PS        R   L +A +  TA  L +      V     +++EEARE+GE+K    E AKGPL++    V+YRE + G  D  + + GD  K++YQVYKGNGDY+FS GYGREF+ D  DTY   +G P+  IP   E  M GMRVG  RKI VPPELG+ TS   PEP TF GKRKL  H+NE L FEVE+++V  K
Sbjct:    4 FWIFLLAFNVIFILVIDIHAFSISHLHRRSPHPPHRRRPAATLPSTSMSAASTRRSHLSSAAVALTASLLPLAA----VAKSPPLSIEEAREIGERKREAEEAAKGPLLRSSKGVRYREPVKGPSDAPLCEKGDTCKVKYQVYKGNGDYVFSLGYGREFKQDRLDTYAIKYGDPDKKIPLAVEDAMSGMRVGSLRKILVPPELGFNTSNQRPEPDTFSGKRKLAVHINEPLLFEVELVKVNKK 242          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|971515230|dbj|GAQ82985.1| (FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Klebsormidium nitens])

HSP 1 Score: 125.946 bits (315), Expect = 2.928e-32
Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 0
Query:  125 PLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
            P++K+   VKYRE  +G G+  + GDLV + Y +Y+ +G Y+ S GYG+E ++DVGD + F  G    +P+G E G+ GM +GG+R+I VPP+LGW   G  P P +   +R+LL H NE L FE+E+++ +
Sbjct:   45 PIVKLPSGVKYRELAVGTGEALRPGDLVSVYYTIYRLSGLYIDSVGYGKEGKDDVGDAFTFELG-AGQVPQGVEQGVLGMCIGGRRRILVPPKLGWINDGVLPRPTSGAAERRLLRHTNEPLLFEIEIVKTK 175          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|1026768918|gb|OAE28947.1| (hypothetical protein AXG93_2960s1260 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 119.013 bits (297), Expect = 6.122e-29
Identity = 78/229 (34.06%), Postives = 120/229 (52.40%), Query Frame = 0
Query:   44 CIARDTSRNVRR------ACRRPTPSRGGGEDVD----RMDALKTAGMVATAGGLAIGGLPNLVEAKKII----NLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHM-NEFLQFEVEVIRVRP 257
            C A   SR +RR      A      S G  +DV+    R  + +    +    GL++  L + +   + +    N+++AR+ GEK   + E A+GP+I     +KYRE   G G     GD V I Y + + NG Y+ S GYG+E +NDVG+   F +G+   +P+  E GMEGMR G KR+I V PE GW      P P +F  +R+L   + ++ L  E+E+++V+P
Sbjct:   17 CSAASDSRGLRRRSSASGAILVSRSSIGNAQDVEANSSRFASRRQVIFLVAGAGLSMAPLHSALAGTEKVTLYSNIDDARKAGEKLREEKEAAEGPVIVSSTGIKYRELERGTGRPVATGDAVSIYYTISRLNGYYLDSMGYGKEGKNDVGEALKFEYGK-GLVPEAIEGGMEGMREGAKRRILVTPERGWVRPDLLPRPTSFFAERRLSERIASQALLIEIELVKVKP 244          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|159484031|ref|XP_001700064.1| (peptidyl-prolyl cis-trans isomerase, FKBP-type [Chlamydomonas reinhardtii] >gi|158282006|gb|EDP07760.1| peptidyl-prolyl cis-trans isomerase, FKBP-type [Chlamydomonas reinhardtii])

HSP 1 Score: 117.087 bits (292), Expect = 2.733e-27
Identity = 62/149 (41.61%), Postives = 84/149 (56.38%), Query Frame = 0
Query:  124 GPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
            G L+ +   ++YRE L G G     G + ++ Y VY+            G   ++FS GYG+E ++DVG TY F  G PNS+P      + GMR GGKR+I VPP LGW +    P P TFGG R+L  H +E L FE E++RVR + T
Sbjct:  164 GTLVTLPSGLQYRELLEGSGPEAALGSVCEVSYVVYRLASGAYYKYSSGGTPVFLFSLGYGKEGKDDVGQTYRFRLGDPNSLPAAVTPALVGMRQGGKRRILVPPRLGWVSDKVGPRPDTFGGGRRLEGHKDEPLLFEAELVRVRTQGT 312          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|302853938|ref|XP_002958481.1| (hypothetical protein VOLCADRAFT_108144 [Volvox carteri f. nagariensis] >gi|300256209|gb|EFJ40481.1| hypothetical protein VOLCADRAFT_108144 [Volvox carteri f. nagariensis])

HSP 1 Score: 112.464 bits (280), Expect = 3.736e-26
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 0
Query:  124 GPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
            G L+ + + ++YRE L G G     G + +I Y VY+            G   ++FS GYG+E ++DVG TY F  G P+S+P      + GMR GG+R++ VPP LGW      P P TFGG+R+L+ H +E L FE E++RVR
Sbjct:   79 GTLVTLPNGLQYRELLEGTGPEATPGSICEITYIVYRLSSGAYYKYSSGGTPVFLFSLGYGQEGKDDVGQTYKFRLGEPSSLPAAVTPALVGMRQGGRRRVLVPPRLGWVDDKVGPRPDTFGGQRRLVGHKDEPLLFEAELVRVR 223          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|255080850|ref|XP_002503998.1| (predicted protein [Micromonas commoda] >gi|226519265|gb|ACO65256.1| predicted protein [Micromonas commoda])

HSP 1 Score: 106.301 bits (264), Expect = 1.305e-23
Identity = 58/147 (39.46%), Postives = 80/147 (54.42%), Query Frame = 0
Query:  124 GPLIKVRDNVKYREELIGKGDIFKA--GDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
            G L+ +   ++YRE   G+ D   A  GD + I Y VY+            G   +++S GYG E Q+DVG TY F  G  +++P      + GMR GG+R++ VPP+LGW +    P P TFG  R+L NH  E L FE E+ RVR
Sbjct:  114 GELVTLPSGIQYRELDEGRADGKTACKGDTLYILYTVYRLAPGAYFKYSSGGTPIFLWSRGYGNEGQDDVGATYRFVLGDSDAVPSAVAPALVGMREGGRRRVLVPPQLGWTSDAVGPRPATFGAGRRLENHKEEPLLFEAELTRVR 260          
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|303271463|ref|XP_003055093.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226463067|gb|EEH60345.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 92.0485 bits (227), Expect = 4.357e-18
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0
Query:  124 GPLIKVRDNVKYREELIGK--GDIFKAGDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
            G L+ +   ++YRE   G+  G +   GD + + Y+V++            G    MFS GYG E Q+DVG+ Y F  G  + +P+G    + GMR GGKR+I VPP  GW      P   +FG  R+L NH  E L  EV+V+R+R
Sbjct:  130 GVLVTMDSGLQYREMDEGRPSGKVAAKGDEMFVLYKVFRLAPGAYFKYSSGGTPILMFSQGYGYEGQDDVGEPYVFALGS-DGMPRGVSPALYGMREGGKRRILVPPNAGWVNDDVKPRAPSFGASRRLANHREEPLLVEVDVLRIR 275          
The following BLAST results are available for this feature:
BLAST of EWM28541.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110959|gb|EWM28541.1|0.000e+0100.00peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
gi|553188821|ref|XP_005854871.1|0.000e+099.62hypothetical protein NGA_0377200 [Nannochloropsis ... [more]
gi|585110960|gb|EWM28542.1|2.328e-126100.00peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
gi|873242458|emb|CEL91697.1|6.367e-5142.80unnamed protein product [Vitrella brassicaformis C... [more]
gi|971515230|dbj|GAQ82985.1|2.928e-3243.18FKBP-type peptidyl-prolyl cis-trans isomerase fami... [more]
gi|1026768918|gb|OAE28947.1|6.122e-2934.06hypothetical protein AXG93_2960s1260 [Marchantia p... [more]
gi|159484031|ref|XP_001700064.1|2.733e-2741.61peptidyl-prolyl cis-trans isomerase, FKBP-type [Ch... [more]
gi|302853938|ref|XP_002958481.1|3.736e-2640.69hypothetical protein VOLCADRAFT_108144 [Volvox car... [more]
gi|255080850|ref|XP_002503998.1|1.305e-2339.46predicted protein [Micromonas commoda] >gi|2265192... [more]
gi|303271463|ref|XP_003055093.1|4.357e-1837.41predicted protein [Micromonas pusilla CCMP1545] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2121rna2121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications