EWM28541.1, cds2113 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|585110959|gb|EWM28541.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana]) HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT
Sbjct: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|553188821|ref|XP_005854871.1| (hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526] >gi|422294179|gb|EKU21479.1| hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0 Identity = 259/260 (99.62%), Postives = 260/260 (100.00%), Query Frame = 0
Query: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSR+VRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT
Sbjct: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRDVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|585110960|gb|EWM28542.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana]) HSP 1 Score: 365.925 bits (938), Expect = 2.328e-126 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG
Sbjct: 1 MEPSLASGPHRRRRDGIVPHFFGCLVLFFTICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|873242458|emb|CEL91697.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 176.022 bits (445), Expect = 6.367e-51 Identity = 104/243 (42.80%), Postives = 133/243 (54.73%), Query Frame = 0
Query: 22 FGCLVLFFT---ICASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDRMDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGD--IFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNS-IPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPK 258
F +L F I ++ F + R RR PS R L +A + TA L + V +++EEARE+GE+K E AKGPL++ V+YRE + G D + + GD K++YQVYKGNGDY+FS GYGREF+ D DTY +G P+ IP E M GMRVG RKI VPPELG+ TS PEP TF GKRKL H+NE L FEVE+++V K
Sbjct: 4 FWIFLLAFNVIFILVIDIHAFSISHLHRRSPHPPHRRRPAATLPSTSMSAASTRRSHLSSAAVALTASLLPLAA----VAKSPPLSIEEAREIGERKREAEEAAKGPLLRSSKGVRYREPVKGPSDAPLCEKGDTCKVKYQVYKGNGDYVFSLGYGREFKQDRLDTYAIKYGDPDKKIPLAVEDAMSGMRVGSLRKILVPPELGFNTSNQRPEPDTFSGKRKLAVHINEPLLFEVELVKVNKK 242
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|971515230|dbj|GAQ82985.1| (FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Klebsormidium nitens]) HSP 1 Score: 125.946 bits (315), Expect = 2.928e-32 Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 0
Query: 125 PLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
P++K+ VKYRE +G G+ + GDLV + Y +Y+ +G Y+ S GYG+E ++DVGD + F G +P+G E G+ GM +GG+R+I VPP+LGW G P P + +R+LL H NE L FE+E+++ +
Sbjct: 45 PIVKLPSGVKYRELAVGTGEALRPGDLVSVYYTIYRLSGLYIDSVGYGKEGKDDVGDAFTFELG-AGQVPQGVEQGVLGMCIGGRRRILVPPKLGWINDGVLPRPTSGAAERRLLRHTNEPLLFEIEIVKTK 175
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|1026768918|gb|OAE28947.1| (hypothetical protein AXG93_2960s1260 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 119.013 bits (297), Expect = 6.122e-29 Identity = 78/229 (34.06%), Postives = 120/229 (52.40%), Query Frame = 0
Query: 44 CIARDTSRNVRR------ACRRPTPSRGGGEDVD----RMDALKTAGMVATAGGLAIGGLPNLVEAKKII----NLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHM-NEFLQFEVEVIRVRP 257
C A SR +RR A S G +DV+ R + + + GL++ L + + + + N+++AR+ GEK + E A+GP+I +KYRE G G GD V I Y + + NG Y+ S GYG+E +NDVG+ F +G+ +P+ E GMEGMR G KR+I V PE GW P P +F +R+L + ++ L E+E+++V+P
Sbjct: 17 CSAASDSRGLRRRSSASGAILVSRSSIGNAQDVEANSSRFASRRQVIFLVAGAGLSMAPLHSALAGTEKVTLYSNIDDARKAGEKLREEKEAAEGPVIVSSTGIKYRELERGTGRPVATGDAVSIYYTISRLNGYYLDSMGYGKEGKNDVGEALKFEYGK-GLVPEAIEGGMEGMREGAKRRILVTPERGWVRPDLLPRPTSFFAERRLSERIASQALLIEIELVKVKP 244
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|159484031|ref|XP_001700064.1| (peptidyl-prolyl cis-trans isomerase, FKBP-type [Chlamydomonas reinhardtii] >gi|158282006|gb|EDP07760.1| peptidyl-prolyl cis-trans isomerase, FKBP-type [Chlamydomonas reinhardtii]) HSP 1 Score: 117.087 bits (292), Expect = 2.733e-27 Identity = 62/149 (41.61%), Postives = 84/149 (56.38%), Query Frame = 0
Query: 124 GPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260
G L+ + ++YRE L G G G + ++ Y VY+ G ++FS GYG+E ++DVG TY F G PNS+P + GMR GGKR+I VPP LGW + P P TFGG R+L H +E L FE E++RVR + T
Sbjct: 164 GTLVTLPSGLQYRELLEGSGPEAALGSVCEVSYVVYRLASGAYYKYSSGGTPVFLFSLGYGKEGKDDVGQTYRFRLGDPNSLPAAVTPALVGMRQGGKRRILVPPRLGWVSDKVGPRPDTFGGGRRLEGHKDEPLLFEAELVRVRTQGT 312
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|302853938|ref|XP_002958481.1| (hypothetical protein VOLCADRAFT_108144 [Volvox carteri f. nagariensis] >gi|300256209|gb|EFJ40481.1| hypothetical protein VOLCADRAFT_108144 [Volvox carteri f. nagariensis]) HSP 1 Score: 112.464 bits (280), Expect = 3.736e-26 Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 0
Query: 124 GPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
G L+ + + ++YRE L G G G + +I Y VY+ G ++FS GYG+E ++DVG TY F G P+S+P + GMR GG+R++ VPP LGW P P TFGG+R+L+ H +E L FE E++RVR
Sbjct: 79 GTLVTLPNGLQYRELLEGTGPEATPGSICEITYIVYRLSSGAYYKYSSGGTPVFLFSLGYGQEGKDDVGQTYKFRLGEPSSLPAAVTPALVGMRQGGRRRVLVPPRLGWVDDKVGPRPDTFGGQRRLVGHKDEPLLFEAELVRVR 223
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|255080850|ref|XP_002503998.1| (predicted protein [Micromonas commoda] >gi|226519265|gb|ACO65256.1| predicted protein [Micromonas commoda]) HSP 1 Score: 106.301 bits (264), Expect = 1.305e-23 Identity = 58/147 (39.46%), Postives = 80/147 (54.42%), Query Frame = 0
Query: 124 GPLIKVRDNVKYREELIGKGDIFKA--GDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
G L+ + ++YRE G+ D A GD + I Y VY+ G +++S GYG E Q+DVG TY F G +++P + GMR GG+R++ VPP+LGW + P P TFG R+L NH E L FE E+ RVR
Sbjct: 114 GELVTLPSGIQYRELDEGRADGKTACKGDTLYILYTVYRLAPGAYFKYSSGGTPIFLWSRGYGNEGQDDVGATYRFVLGDSDAVPSAVAPALVGMREGGRRRVLVPPQLGWTSDAVGPRPATFGAGRRLENHKEEPLLFEAELTRVR 260
BLAST of EWM28541.1 vs. NCBI_GenBank
Match: gi|303271463|ref|XP_003055093.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226463067|gb|EEH60345.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 92.0485 bits (227), Expect = 4.357e-18 Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0
Query: 124 GPLIKVRDNVKYREELIGK--GDIFKAGDLVKIRYQVYK------------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVR 256
G L+ + ++YRE G+ G + GD + + Y+V++ G MFS GYG E Q+DVG+ Y F G + +P+G + GMR GGKR+I VPP GW P +FG R+L NH E L EV+V+R+R
Sbjct: 130 GVLVTMDSGLQYREMDEGRPSGKVAAKGDEMFVLYKVFRLAPGAYFKYSSGGTPILMFSQGYGYEGQDDVGEPYVFALGS-DGMPRGVSPALYGMREGGKRRILVPPNAGWVNDDVKPRAPSFGASRRLANHREEPLLVEVDVLRIR 275 The following BLAST results are available for this feature:
BLAST of EWM28541.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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