rna212, rna212 (mRNA) Nannochloropsis gaditana

Overview
Namerna212
Unique Namerna212
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1643
Alignment locationCM002455.1:540655..541926 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g3.9785.mrna
Orig protein idgnl|cribi|Naga_100013g3.9785
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:540655..541926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g3gene203Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna212rna212-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30497.1cds212Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna212 ID=rna212|Name=rna212|organism=Nannochloropsis gaditana|type=mRNA|length=1643bp
CGGAGTCCTCTTCACTAGGCCCCCGCTCTCGGTCGCCATGATCTCTCCTG
TGCAAGGTCAATAACAAGAAAATCAGGGATGGATGCACATCGATAAGTTA
GTGCTGGTGCACTCGTGCAGAGATGATACATGCATCTGCTAGTTAGAGGG
CAGAATCATACTCTGTTCAGATTGTTGTGTTTCTTGTAGATCGAGAGGGC
AACAGCAGCCATATTTCACCCCCTTTAAAAGTCTTGCACAGAGTCATTTC
TATTGATTTCGTGCGGAACGTCAATTCTAGGTCGAGAAGGCAAGACGTGA
AGTATCAGATAGTGCGCTTTTTGTGGGCGGCAGCTGCAAGAAATGGAGTG
AAAGTGTGTTGAGCCACCCCTCACTGCATCGCGTGCATGGAACAAATGGC
GAGGCTCGGGATACACCTTTTTTGCTTCCTCATCTCAAGTCTTTCACTTC
TCGGTCGCGTACATTCCACCCATGCACAGACACACATACGTGGAAAAGAA
AACTATGGGGACGGAAGATGGCCGTTTTGATCCATTACTTTTAAACATTG
CGCAGCAGTGCCAAGGCATCGATGGCCTTCTAGAGGTCTTCCTGTCCTTT
TTGCGTCGCAAGACAGATTTCTACACGGGTGCCACGGCCAGTAAAGTTGA
AGAAACAATTTTAGCTGCCGTGCGAAAGCAAATGGGAATGGCAGAACGTA
CACAGCAGGAAGAACTTCGTACTCGTGAGGCAGAGGAGGCGCGACGTGAG
GAACGAATGCGAATGGCGAAATTGAAAGGAAAGGCGAACCAGAAAGCAAA
AGATTCGAATGCAGTGACAATGGACGCAGCTACGTCGTCGCACACTTCAC
AAACGAACGTTGTTGAGCTAGGTGCTGATGGTAGTTTCGACGTCGCATCA
ACCGCGGCGACTAAGGAACCGAAGGAGGAGAAGCCCAAACTTGACGCAGA
TGGCGAGGAGGAAAAGGAAGAAGCTCCTCCTGGGAACGGTGGTGCCACGG
ATCGGTACATTTGGACACAGCAACTGGCTGAAGTGACGATCAACGTTCCG
GTACCCGTGGGGACGCGCTCGCGCGACCTGAGCGTTGACATAGGGAAGAA
ACGATTGCGAGTCGCCCTCAAAGGGGGGCCAACGCTGGTCGAAGGAGAAC
TCTACAAGCCAATTAAGGTAGATGATTCATTTTGGACGCTAGAAGATGGG
CGTGAAGTGGTGATTAGCTTGCAAAAAGAGAACGGGATGGAGTGGTGGAA
ATGCGCGATCGCAGGCGACCCGGAAATTGATACGAGCAAGGTTTCGCCTG
AGAACTCGAAGCTGAGCGATTTAGATGCAGAGACGCGCCAGACAGTGGAA
AAAATGATGTTTGATCAGCGTCAGAAGCAGATGGGCCTGCCGACGTCAGA
TGAGCAGAAGAAAAGGGAGATGCTCGAGAAGTTCATGAAGCAGCATCCTG
AAATGGATTTCAGCGGCGCGACCATTAAGTGAGAGAGGATGACAGTCAGA
AGTGCCTTTCATAGAGGCATGAACGAGTCAAGAGAAGAAGTCATCTGGGC
GTTCACATTTGCTTCGATTCTTTTTCTTGATTTGCAACGACCGTGATAGC
GTTCAAGTTCTCGGTTTACAATTCCCTGTCAGGGGCCTGACCT
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protein sequence of rna212

>rna212-protein ID=rna212-protein|Name=rna212|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MMALVQKVCIVLLAVHTAHAFLLPRASLPPSTTALEQQVLRATGTSSTPQ
FNLRYGEPPPQEGEAERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAE
GRGAILAKYEDKDMDQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDG
PAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMA
EKLMAKESDLAPQTIDVDGHEVLVDQGN
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mRNA from alignment at CM002455.1:540655..541926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna212 ID=rna212|Name=rna212|organism=Nannochloropsis gaditana|type=mRNA|length=1272bp|location=Sequence derived from alignment at CM002455.1:540655..541926- (Nannochloropsis gaditana)
CATGGCATTTTCGTTCAATGCGCGGGAAACTCGTGCGCTGGAGTAGCAAC
AGTCCTCTAATCTCCTTTCCTGTGTGTAGGTGCCGTAGAAGCTGTGAGCT
ATCGTAATGATCGTCTAAGGTCTTGGAACTTTTCCCCTACCTCGATGCGC
ATTGCTTGTTGAAGTGCGCGACGTCGATTGAGCGGAGGGGGAGGCGATTC
CTGCCTCTTAGGGGCATTTTATAGCCTTAAAGCGCATCAACTTACGTGTA
CACCATCATTTACCAATGTAGATCAACAAGAGCATGATGGCGCTGGTACA
GAAGGTTTGCATCGTTTTGTTGGCAGTTCACACCGCTCACGCTTTTCTGC
TTCCGAGAGCTTCCTTGCCACCTTCCACGACTGCACTTGAACAGCAAGTA
CTGCGTGCTACTGGGACCTCGTCAACACCACAATTCAATCTGCGCTATGG
AGAGCCACCTCCACAAGAAGGCGAAGCTGAGCGTTTGAATCGACAAAAGC
GCTGGGAAGCGGAGTATCTAGCCTACGTCAAGGTAAGGCAAATCTGGGGG
AGATACGAGAGTGCTCAAGGGGCGGAAGGTGGATAAAAAGAGTCGCTCAA
TGACAAGCCGTGGCGTTGTAAAGTTCTGCTCAAAAATCACGGAGTACATC
GGACACAAATTTCTCTACAAATCACAGCGAAACGGTGCCCATTTGTGTGC
AATGAGCTGGCGGGGTTATCAGGCAGAAGGTCGAGGAGCGATTCTGGCCA
AGTACGAAGACAAGGATATGGACCAGGAGGGAAGGACGCTCAGCGAGATT
GATCGCGTGAGTGGTGTGCCGAGTATGTACGTGAGCCTTGCTCGATGGAT
GGAGAGTGGGCAGGCAGCAAAGGACGGACCTGCCCAGGCAGAGCGGCAGG
ACTTGCAACAAATCCTCGACCGTGTCATCTCATACGAGCCAGAGCGGGCT
TTCGTCGTGGTTTTCCAAGCGCATGGCCTCATGGGGGCTGACATTGTCAC
ACCCAATGTCTCCCCCCCAGACATGGCGGAGAAACTGATGGCGAAGGAAA
GCGACCTGGCCCCGCAGACCATTGACGTAGACGGACACGAGGTCCTGGTC
GACCAAGGAAACTGATTTCTGACGCGCGATACTCTGCCGAGACCGCAGTT
GTCTGGGGGTGTCAGAAGGTCAGGCCCCTGACAGGGAATTGTAAACCGAG
AACTTGAACGCTATCACGGTCGTTGCAAATCAAGAAAAAGAATCGAAGCA
AATGTGAACGCCCAGATGACTT
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Coding sequence (CDS) from alignment at CM002455.1:540655..541926-

>rna212 ID=rna212|Name=rna212|organism=Nannochloropsis gaditana|type=CDS|length=1374bp|location=Sequence derived from alignment at CM002455.1:540655..541926- (Nannochloropsis gaditana)
CGAAACGGTGCCCATTTGTGTGCAATGAGCTGGCGGGGTTATCAGGCAGA
AGGTCGAGGAGCGATTCTGGCCAAGTACGAAGACAAGGATATGGACCAGG
AGGGAAGGACGCTCAGCGAGATTGATCGCGTGAGTGGTGTGCCGAGTATG
TACGTGAGCCTTGCTCGATGGATGGAGAGTGGGCAGGCAGCAAAGGACGG
ACCTGCCCAGGCAGAGCGGCAGGACTTGCAACAAATCCTCGACCGTGTCA
TCTCATACGAGCCAGAGCGGGCTTTCGTCGTGGTTTTCCAAGCGCATGGC
CTCATGGGGGCTGACATTGTCACACCCAATGTCTCCCCCCCAGACATGGC
GGAGAAACTGATGGCGAAGGAAAGCGACCTGGCCCCGCAGACCATTGACG
TAGACGGACACGAGGTCCTGGTCGACCAAGGAAACTGAATGATGGCGCTG
GTACAGAAGGTTTGCATCGTTTTGTTGGCAGTTCACACCGCTCACGCTTT
TCTGCTTCCGAGAGCTTCCTTGCCACCTTCCACGACTGCACTTGAACAGC
AAGTACTGCGTGCTACTGGGACCTCGTCAACACCACAATTCAATCTGCGC
TATGGAGAGCCACCTCCACAAGAAGGCGAAGCTGAGCGTTTGAATCGACA
AAAGCGCTGGGAAGCGGAGTATCTAGCCTACGTCAAGCGAAACGGTGCCC
ATTTGTGTGCAATGAGCTGGCGGGGTTATCAGGCAGAAGGTCGAGGAGCG
ATTCTGGCCAAGTACGAAGACAAGGATATGGACCAGGAGGGAAGGACGCT
CAGCGAGATTGATCGCGTGAGTGGTGTGCCGAGTATGTACGTGAGCCTTG
CTCGATGGATGGAGAGTGGGCAGGCAGCAAAGGACGGACCTGCCCAGGCA
GAGCGGCAGGACTTGCAACAAATCCTCGACCGTGTCATCTCATACGAGCC
AGAGCGGGCTTTCGTCGTGGTTTTCCAAGCGCATGGCCTCATGGGGGCTG
ACATTGTCACACCCAATGTCTCCCCCCCAGACATGGCGGAGAAACTGATG
GCGAAGGAAAGCGACCTGGCCCCGCAGACCATTGACGTAGACGGACACGA
GGTCCTGGTCGACCAAGGAAACTGAATGATGGCGCTGGTACAGAAGGTTT
GCATCGTTTTGTTGGCAGTTCACACCGCTCACGCTTTTCTGCTTCCGAGA
GCTTCCTTGCCACCTTCCACGACTGCACTTGAACAGCAAGTACTGCGTGC
TACTGGGACCTCGTCAACACCACAATTCAATCTGCGCTATGGAGAGCCAC
CTCCACAAGAAGGCGAAGCTGAGCGTTTGAATCGACAAAAGCGCTGGGAA
GCGGAGTATCTAGCCTACGTCAAG
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Synonyms
Publications