EWM30497.1, cds212 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM30497.1 vs. NCBI_GenBank
Match: gi|585113161|gb|EWM30497.1| (hypothetical protein Naga_100013g3 [Nannochloropsis gaditana]) HSP 1 Score: 472.626 bits (1215), Expect = 1.024e-168 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query: 1 MMALVQKVCIVLLAVHTAHAFLLPRASLPPSTTALEQQVLRATGTSSTPQFNLRYGEPPPQEGEAERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDMDQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKESDLAPQTIDVDGHEVLVDQGN 228
MMALVQKVCIVLLAVHTAHAFLLPRASLPPSTTALEQQVLRATGTSSTPQFNLRYGEPPPQEGEAERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDMDQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKESDLAPQTIDVDGHEVLVDQGN
Sbjct: 1 MMALVQKVCIVLLAVHTAHAFLLPRASLPPSTTALEQQVLRATGTSSTPQFNLRYGEPPPQEGEAERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDMDQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKESDLAPQTIDVDGHEVLVDQGN 228
BLAST of EWM30497.1 vs. NCBI_GenBank
Match: gi|299116277|emb|CBN76085.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 149.058 bits (375), Expect = 2.078e-40 Identity = 98/232 (42.24%), Postives = 124/232 (53.45%), Query Frame = 0
Query: 3 ALVQKVCIVLLAVHTAHAFLLP--RASLPPSTTALEQQVLRATGTSSTPQFNLRYGEPPPQEGE------------AERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDMDQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKES-DLAPQTIDVDG 219
A++ C L A A AFLLP RA L TA +V+ A G F P P +E L+ WE EY AY+KR G +LC+MSW G+Q GRGAI A Y+D + + L+E D+ G+PSMYV L + ES +AA G E DL QI+ RV Y PER FVVVFQA G+MGADIV PNVSPP+MA+ ++ + P +DG
Sbjct: 67 AVIAYCC--LSAPFLAEAFLLPPARAGLAQRETAATARVMAAKG------FGKSVEPPSPAPATTGGEEGGGKAPGSEGLSGVGSWEKEYKAYIKRTGQYLCSMSWEGHQEMGRGAIFANYDDARKEDK---LNETDKFGGIPSMYVPLTEF-ESMKAA--GQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVSTMPSDTGLDG 284
BLAST of EWM30497.1 vs. NCBI_GenBank
Match: gi|873235732|emb|CEL99908.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 95.9005 bits (237), Expect = 1.297e-20 Identity = 66/207 (31.88%), Postives = 105/207 (50.72%), Query Frame = 0
Query: 16 HTAHAFLLPRASLPPSTT-ALEQQVLRATG------TSSTPQFNLRYGEPPPQEGEAERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDMDQE-----GRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKESDL 210
H+A AF+ P A L P + LRA G T P+F YG + + +Q+ WE Y V+ +G CA +W GY+ GRGA++ +E K + T ++ ++ P+MY ++ +K ++ E L Q+ R+ SY+P + FVVVFQ+ GLMGADIV PN++P + A ++ +E++L
Sbjct: 39 HSAGAFI-PVADLSPRRRFSRHGSSLRAAGEGFGPKTERRPRFQFSYGG-----SQLTPMEQQQLWEKSYQENVRASGFSWCAQAWMGYEKMGRGAVMVYHELKQEGEGEGGDGAATATKATKMDVAPTMYAPAEKF------SKKAGSREEESHLAQVRRRLDSYDPHKEFVVVFQSSGLMGADIVKPNMAPAEAA-RIYKEENNL 232 The following BLAST results are available for this feature:
BLAST of EWM30497.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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