rna2119, rna2119 (mRNA) Nannochloropsis gaditana

Overview
Namerna2119
Unique Namerna2119
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1895
Alignment locationCM002458.1:927875..929517 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g41.575.mrna
Orig protein idgnl|cribi|Naga_100009g41.575
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:927875..929517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g41gene2024Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28532.1cds2111Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2119rna2119-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2119 ID=rna2119|Name=rna2119|organism=Nannochloropsis gaditana|type=mRNA|length=1895bp
CACGGGCGTTGGATTGATATGGTTGTGATGTGCTCGAGGATGCCGGCGCG
GTGTCGCTCGAGACCTTGCGAGGGAATTGCTGTCTTCATTCATAGGAGCA
GTATCAGGACTACCTCACCCCGGCGTGCATCCCTTTGACGAGACAGGCGG
GCGACCATGGGGGAACGAGGCATGCAAATAAAGGCGGATTTGAATAAGGA
AGGATGGGAATCGAGTGACTTCCCTTTGGTATGCGAGACGTGTCTGGGGG
ACAATCCCTACGTCCGCATGACCAAGGAACCTGCGGGCAAGGCTTGCAAG
ATATGTGACAGGCCATTCACCATTTTTCGGTGGCGCCCGGGGGCCAAGGC
CCGCTTCAAGAAGACGGAGGTGTGCCAAACTTGTGCGAAAATGAAGAACG
TCTGCCAAACTTGTGTTCTGGATTTGACTTACGGCTTGCCCGTTCAAGTA
CGGGACTCTGTCTTGGCGGAAGCAGCGGCCGCTGGGGAGGGAGGAGCAGC
ATCATATGCGATGACAGTCCCGCAAAGTGACACAAACAAGCAATGGTTTG
CCGGTCAACACGATAGAATGGTTGCAGAAGGCCATGCTGATTCGTACGGC
AAGGCTCAAATCAACGAAAAACTCATGCGGTTGTCTCGAGCCCAACCGTA
CTACAAGCGAAATTTGCCGCACAAATGCACGTTCTATGCCAAGGGAGAGT
GCACACGTGGGGACCGTTGTCCATTTTTGCATGAGATGCCCACGTCCCGC
AGTGATCCCCTGGCCAACCAGAACATCAAAGACCGCTTCTACGGGCAGGA
CGACCCCGTGGCCCAGAAAATGTTGGGCCGGGCGGCATCGAAGGAGAAAG
AGGACCAGGCACCCCTGATCCCGCCCACGGACCCCGAGATCAAGACGCTG
ATGGTCGGGGGGATGGAGGGGGGGGCGGTCACGGAGACGGAGATGCGCGA
AGCTTTTTACGGCTTTGGAGAGGTGGCCGGCGTCCGCATGGTCCCGGCCA
AGCACCTTGCCTTTGTCGAGTACACCACCCGTGAGGCGGCGGAGGCGGCG
GCAAAGGCCCTGCACAACAACCTTACGTTGCAAGGGCTACGTTTGCGTGT
GTCCTGGGCCCTTCGACCGGCGGGCTCTGGCCCCTTCAATCCAGGCACTG
GCACGGGGAGCTTCGCCAGTGCGGGCGGCGCGGGCCCCCTTGGCGCCCCA
CCGGACTTCGCAAATCAACCTGTCAGCACGATGGCAGGGCAGTCCCTTCC
TTTGCCACCGCCTCAGCCTCTGAATTTCCCGCCTGGACCCTCGCCCTCTT
CTTGGGTACCCGGGAGCAACACGCTTCCCCCTCCTGGTGGCTATCCGCCA
CCCGGGCCTCACCCAGGGCAAGGTGGCGTGCGAGGTCCCCCCTCTCTGCC
TCCCCCGCAGCAGCCGTATTATCCCTCTATGGATCCTCAACGTATGGGCG
CACGACTTCCGCCTCAGAACCAAGCTGCTTCCTCCGGTCCTAGGGACCGC
TGAGTTTGAATGAAAGGAGAGACAAAGGCTGATGAAAGGAGAGCTGTGAA
CCTCGCGAGGACGGGATCGACAGGGCTTGCCCCGTCAAAGAAGCGGATAC
CTGGATTTGTACAGATATCGAGGCTCATATTTTACAGTTTGTACTATGGT
CGCAATTAAATGGATGGCGATGTGTGCGATGAACCATTGACTAGAGAAAA
GATAGAAATTGGGTGCCTTGACACATCTTTGTCTTTTGTTTTTCGCGCTC
CTGCAGAGAGGTCGCTTACACCCACTGGTGTGTTCTTAGTTCCTCACGAA
GTCCACGAGGATTCAACCACTAGCTTCTACATACGGCCATCAACGTTCAA
TTACATCAAACTTTTGAATTTACTATGATTGCATTATATCACATC
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protein sequence of rna2119

>rna2119-protein ID=rna2119-protein|Name=rna2119|organism=Nannochloropsis gaditana|type=polypeptide|length=408bp
MAQKTLFYATGILFWATSSTAALNSMAAAGGAVPAQTLALLGQLTLASVA
LSATTEDVHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTST
DCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQC
EEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGY
KISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEG
LTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFC
PDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGL
YALAGGISFMCLLLLTVSILQKQGHVRGQAEAADAADAGKTNVSSPAVSP
VASPIDKI
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mRNA from alignment at CM002458.1:927875..929517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2119 ID=rna2119|Name=rna2119|organism=Nannochloropsis gaditana|type=mRNA|length=1643bp|location=Sequence derived from alignment at CM002458.1:927875..929517- (Nannochloropsis gaditana)
AAATTAAGTAATTGTGACGGATAGGCTTTATCACAGGAATGGTGTGTTAC
GTTTATAGGAATGCCTTAAACACTGCTCGGGATATGTTCCCTCGAGTCTG
CACGCAGGGACTTCGTCGATGCAAAGCATGCCTTACTCCTTGTGTCTCAC
TTATTTTATCCTTCGATCCCTTCCGAAGAAATGGCACAGAAGACACTATT
TTATGCAACAGGCATCCTTTTTTGGGCTACCAGCAGTACGGCTGCTTTAA
ATTCCATGGCTGCTGCAGGAGGTGCCGTACCCGCCCAGACATTGGCCCTG
CTTGGTCAGTTGACCCTTGCTTCTGTGGCGCTCTCAGCCACGACTGAAGA
CGTGCATGCACAAATGGCACCTGCTTCGCAGGATGATTGCAACTCGTTCA
TGACATTGTTGTTGGGACCTCTGACCACAGAATGTGCAGAGCTGGCTCGA
GATCTTCAAACAGTAGCCACGACCAGCACGGACTGCAAGCGCGTTTACGA
TTTTTCAAAGCCCAAATTGGACGGTATGTGCTCTAACAAATGTTATCCAA
CTATGGTGCGTGCTTTGGACGGTATGGCAAAAGCTGGCTGTTCTGCTGAC
GGTGTCACGAAGATGATGTGCGACCAATGCGAGGAGGGCACGGCCTGTGT
CGAGGGCGTGTGCCGGCCACTGTGTTCGGCCACGAAGCCGTGCGCTTGCA
ACGATGAGTGTGTGAATGGATCATGCCAGTCGTCGGACCAAGGTGGCTTG
CAGCGTACGGATATGGGCACATTTGGGTACAAAATATCGCTGGAGCACTT
GTGCCTGAAGGCCCCACTGGCGCTTCCAGACACGGACGCCCCAGATGCCA
GCACGGCTGCAAAGGAGCAGCAGATGGCGTTGGCCAAGGAGGACTACTGC
TTTTCAAGCGTGTTCAATGCCTTGGAAGGGTTGACACCCGATGTCTGCGA
TAAGCTGGCCGCCACGGGATGTTGCGCCGGGACAGTAATGCAATACGGAG
TGACATGTGGGCTGGCGAACGATACGGTGAAACTCAACGGGGGGGCACCC
ATGCAACTGACTGCTTTGGCCAATTTCTGCCCCGATGTGGACTTTAAAAC
CAAATGCAGCAATGCTCCTGCGTACGCGGACGGCATGTGTAAGGTCGGGT
ACGTGGACGGCCCGGGGACCGAACTGCCCTTCCCAAGCCTGGCAAGCTTC
GCCCGTGGAAGTTTTGACATGGCGGGGCTTTATGCCCTGGCTGGGGGTAT
CTCTTTCATGTGCCTCCTTTTGTTGACGGTGTCGATTCTCCAGAAACAAG
GGCACGTCCGGGGTCAAGCCGAGGCGGCGGACGCGGCAGATGCGGGGAAG
ACGAATGTCTCCTCACCCGCGGTTTCACCCGTAGCCTCCCCCATCGACAA
GATATAGATTTCGGCAACGGGCACATGGACAGTAGAATTCACCGGTGATG
ATGTGATATAATGCAATCATAGTAAATTCAAAAGTTTGATGTAATTGAAC
GTTGATGGCCGTATGTAGAAGCTAGTGGTTGAATCCTCGTGGACTTCGTG
AGGAACTAAGAACACACCAGTGGGTGTAAGCGACCTCTCTGCAGGAGCGC
GAAAAACAAAAGACAAAGATGTGTCAAGGCACCCAATTTCTAT
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Coding sequence (CDS) from alignment at CM002458.1:927875..929517-

>rna2119 ID=rna2119|Name=rna2119|organism=Nannochloropsis gaditana|type=CDS|length=1227bp|location=Sequence derived from alignment at CM002458.1:927875..929517- (Nannochloropsis gaditana)
ATGGCACAGAAGACACTATTTTATGCAACAGGCATCCTTTTTTGGGCTAC
CAGCAGTACGGCTGCTTTAAATTCCATGGCTGCTGCAGGAGGTGCCGTAC
CCGCCCAGACATTGGCCCTGCTTGGTCAGTTGACCCTTGCTTCTGTGGCG
CTCTCAGCCACGACTGAAGACGTGCATGCACAAATGGCACCTGCTTCGCA
GGATGATTGCAACTCGTTCATGACATTGTTGTTGGGACCTCTGACCACAG
AATGTGCAGAGCTGGCTCGAGATCTTCAAACAGTAGCCACGACCAGCACG
GACTGCAAGCGCGTTTACGATTTTTCAAAGCCCAAATTGGACGGTATGTG
CTCTAACAAATGTTATCCAACTATGGTGCGTGCTTTGGACGGTATGGCAA
AAGCTGGCTGTTCTGCTGACGGTGTCACGAAGATGATGTGCGACCAATGC
GAGGAGGGCACGGCCTGTGTCGAGGGCGTGTGCCGGCCACTGTGTTCGGC
CACGAAGCCGTGCGCTTGCAACGATGAGTGTGTGAATGGATCATGCCAGT
CGTCGGACCAAGGTGGCTTGCAGCGTACGGATATGGGCACATTTGGGTAC
AAAATATCGCTGGAGCACTTGTGCCTGAAGGCCCCACTGGCGCTTCCAGA
CACGGACGCCCCAGATGCCAGCACGGCTGCAAAGGAGCAGCAGATGGCGT
TGGCCAAGGAGGACTACTGCTTTTCAAGCGTGTTCAATGCCTTGGAAGGG
TTGACACCCGATGTCTGCGATAAGCTGGCCGCCACGGGATGTTGCGCCGG
GACAGTAATGCAATACGGAGTGACATGTGGGCTGGCGAACGATACGGTGA
AACTCAACGGGGGGGCACCCATGCAACTGACTGCTTTGGCCAATTTCTGC
CCCGATGTGGACTTTAAAACCAAATGCAGCAATGCTCCTGCGTACGCGGA
CGGCATGTGTAAGGTCGGGTACGTGGACGGCCCGGGGACCGAACTGCCCT
TCCCAAGCCTGGCAAGCTTCGCCCGTGGAAGTTTTGACATGGCGGGGCTT
TATGCCCTGGCTGGGGGTATCTCTTTCATGTGCCTCCTTTTGTTGACGGT
GTCGATTCTCCAGAAACAAGGGCACGTCCGGGGTCAAGCCGAGGCGGCGG
ACGCGGCAGATGCGGGGAAGACGAATGTCTCCTCACCCGCGGTTTCACCC
GTAGCCTCCCCCATCGACAAGATATAG
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Synonyms
Publications