EWM28532.1, cds2111 (CDS) Nannochloropsis gaditana

Overview
NameEWM28532.1
Unique Namecds2111
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:928111..929337 -

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Properties
Property NameValue
Protein idEWM28532.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g41.575.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:928111..929337 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28532.1 vs. NCBI_GenBank
Match: gi|585110950|gb|EWM28532.1| (hypothetical protein Naga_100009g41 [Nannochloropsis gaditana])

HSP 1 Score: 825.469 bits (2131), Expect = 0.000e+0
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0 
Query:    1 MAQKTLFYATGILFWATSSTAALNSMAAAGGAVPAQTLALLGQLTLASVALSATTEDVHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKQGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408
            MAQKTLFYATGILFWATSSTAALNSMAAAGGAVPAQTLALLGQLTLASVALSATTEDVHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKQGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI
Sbjct:    1 MAQKTLFYATGILFWATSSTAALNSMAAAGGAVPAQTLALLGQLTLASVALSATTEDVHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKQGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408
[Close]
BLAST of EWM28532.1 vs. NCBI_GenBank
Match: gi|553188827|ref|XP_005854873.1| (hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526] >gi|422294181|gb|EKU21481.1| hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 823.157 bits (2125), Expect = 0.000e+0
Identity = 406/408 (99.51%), Postives = 408/408 (100.00%), Query Frame = 0 
Query:    1 MAQKTLFYATGILFWATSSTAALNSMAAAGGAVPAQTLALLGQLTLASVALSATTEDVHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKQGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408
            MAQKTLFYATGILFWATSSTAALNSMA+AGGAVPAQTLALLGQLTLASVALSATTEDVHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQK+GHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI
Sbjct:    1 MAQKTLFYATGILFWATSSTAALNSMASAGGAVPAQTLALLGQLTLASVALSATTEDVHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKRGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408
[Close]
BLAST of EWM28532.1 vs. NCBI_GenBank
Match: gi|585106652|gb|EWM25017.1| (hypothetical protein Naga_100068g6 [Nannochloropsis gaditana])

HSP 1 Score: 166.007 bits (419), Expect = 2.740e-43
Identity = 88/263 (33.46%), Postives = 135/263 (51.33%), Query Frame = 0 
Query:   59 HAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGL-TPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMC 320
            H +   A+ ++C +F+   L P   EC ++A+ +  +     +CK  YDFS+  +  +C+N+C+  + + L  M+ AGCSA  + K  C++C  G  CV   CR +CS + PC C+  C +G+C       +   DMG  GYKI+LE+LC  +P                        ++YCF+ +F  L  L     C K+   GCC GTV  +   C  +NDT+  + G+ + LT L  FCP++DFKT C+NAP    G C
Sbjct:  162 HGRRLGATDEECGAFLAASLAPHLWECFDMAQTVLNLVKQE-NCKTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSA-SILKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACESGACIPPKNSEVTVNDMGVNGYKIALEYLCTTSP----------------------TNKNYCFADIFGVLNALDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTSAGS-ISLTDLQQFCPEIDFKTPCANAPPLEPGAC 399
The following BLAST results are available for this feature:
BLAST of EWM28532.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110950|gb|EWM28532.1|0.000e+0100.00hypothetical protein Naga_100009g41 [Nannochlorops... [more]
gi|553188827|ref|XP_005854873.1|0.000e+099.51hypothetical protein NGA_0377400 [Nannochloropsis ... [more]
gi|585106652|gb|EWM25017.1|2.740e-4333.46hypothetical protein Naga_100068g6 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2119rna2119Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications