rna2118, rna2118 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2118
Unique Name	rna2118
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1768
Alignment location	CM002458.1:925317..928068 +

Link to JBrowse

Properties


Property Name	Value
Product	zinc finger ccch domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100009g42.608.mrna
Orig protein id	gnl\|cribi\|Naga_100009g42.608
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:925317..928068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g42	gene2023	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2118	rna2118-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28565.1	cds2110	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:925317..928068+
coding sequence from alignment at CM002458.1:925317..928068+

mRNA sequence

>rna2118 ID=rna2118|Name=rna2118|organism=Nannochloropsis gaditana|type=mRNA|length=1768bp
AGCTTGTTTCGAGAAAGCCCTGCGAGGCGCACGCACTTGATGTTATAACC
AAGGATAATAGGGAGATCTTCGCTTGATTGACTTCCCTGACTTGCCAACT
CTTCCACATTTACGTGCATTTTTTGACAGATTTAGAGTTTTGCTCCATAA
TGCGTCGGATTCCGAAAGCCGCAACAGCAGTATCGTGCTGCCTAGTAGCC
CTGTGGTCCTACCCGACCATGGCTTGGACTTATCTTGCACCGCGCTCTAC
AATCGGTTCCAGCTGTGCTTCCAAAGATGCCATGTGCAGAGCCTTCTCCC
AGGGGACAGTGGTATCGGCCAGCAGCAGTCATTTGATCGATTCAAGCTCA
TTCAGGATGCGGGCAACCGCATCATCCCCGTTAGGGACGACAGTCCGCTC
GACGATCAATCAAAAAAGCGAACAATGTAAGTATGCCTGCACTTCGTTAT
GTAATTGTGCTACGCGGAAACGCGCGGTATTGCGTCCAAGTCGTCGGACG
CGGCTGTGGGCAACAGCACAGGATGCGGAGGAAGAGGGCTCGGAGGAGGG
GAAGAAGCGAGGGGACGAGACTGAAGACATGGATGTGGCCGCCGAGGAAG
GAGAAGGAGTGGAAGCCACTGAACAAAGTGAGGAGGAGGAGGCCGAAGAG
CTCTCCCCGGAGGACCAAGCTAAGGCCGCTTTGCGGGCGGAGTTGAAGGA
GTTGGAGAAGGAGTTAGCCAAGAAGCGGAATGAGCTGACAGAGGCCCAAG
ACCGGCTTAAAACTGTGGGGAAAGAGGGTTTTATGCGTCTTGCGGCCGAG
GTTGAGACATACAAACGCCGACGAGCGGACGGATTGACCTACGTGCGGGA
GGAAGCTGCGCAAGAAACCATGAAGCAACTGCTGCCGGTCTTCGACCTGA
TGGAGGAGCTGGAGGAGAGGTATGCGGACGTTTCCAGCGAGGCCTCTTTG
AAGGTGCTGAATGGGTACAAGAACCTCCTGCAGGTCTTTGTGGGCAAGGC
TGAGAGGCTGGGTGTCAAGGTCTTGGAGATCGGTAAGCTTCGAGACGGAC
GGCGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGG
ACGCACGATGTTTCTTTCTTGGCCGCCTTTGGCCTATCTTGGGCGACGAA
AAAGGAAACTTACATTTAAGGACCGATGGGGCAAGGTGTCGATGAGGAAC
AGGATTAATGATGCATGTATTGTCCAAGACTACGGTCATGCGGAAAAGAT
CACCTTGGAGAACTGAGACACCCCCAAAGCGCCCTCTCCTCCTCTACCTC
CCTCCTTTTCTCTCCTCCGCATCCCTTTTAATGTTACCTTCCTTCCTATC
CATCCGTACAGCGGCAGGTGATGCATATGACGAGGAGAGCATGGAGGTGG
GGGAGGTTGTGGTCGGGGAGGCGGACGGGGTGGTCGTGGAAGTGGAGCAG
AAAGGGTATCAGATCGGAGAGCGGGTGGCGCGACGGGCCAGGGTGAAGGT
GAGTGCCACGGAGGCCACGCTACAGAAGGCGAAGGAGGAGGAGAAGGAGG
AAGAGGGAGACAGCGAGGCGAAGGAGGACTCTGGCCAGGAGTAGGGGGCA
GCGGACGGCTTGAGCCTTGCGTGGCGAGGAGGAGAGGCGTGAGGCGATAT
CAAAGAGGGAGGCATGAGGAAATATGATGAGAGAGGAGCGGGGAGTATCG
CGCTTGTTGCTTATGGTCAGGGCATCCAAGACTCCGGTAGAAATGAATAA
CCGCTTTTAAGCTTGCCA

protein sequence of rna2118

>rna2118-protein ID=rna2118-protein|Name=rna2118|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKIC
DRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRD
SVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKA
QINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSD
PLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMV
GGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAK
ALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPD
FANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPG
PHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR

mRNA from alignment at CM002458.1:925317..928068+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2118 ID=rna2118|Name=rna2118|organism=Nannochloropsis gaditana|type=mRNA|length=2752bp|location=Sequence derived from alignment at CM002458.1:925317..928068+ (Nannochloropsis gaditana)
CACGGGCGTTGGATTGATATGGTTGTGATGTGCTCGAGGATGCCGGCGCG
GTGTCGCTCGAGACCTTGCGAGGGAATTGCTGTCTTCATTCATAGGAGCA
GTATCAGGACTACCTCACCCCGGCGTGCATCCCTTTGACGAGACAGGCGG
GCGACCATGGGGGAACGAGGCATGCAAATAAAGGCGGATTTGAATaagga
aggatgggaatCGAGTGACTTCCCTTTGGTATGCGAGACGTGTCTGGGGG
ACAATCCCTACGTCCGCATGACCAAGGAACCTGCGGGCAAGGCTTGCAAG
ATATGTGACAGGCCATTCACCATTTTTCGGTGGCGCCCGGGGGCCAAGGC
CCGCTTCAAGAAGACGGAGGTGTGCCAAACTTGTGCGAAAATGAAGAACG
TCTGCCAAACTTGTGTTCTGGATTTGACTTACGGCTTGCCCGTTCAAGTA
CGGGACTCTGTCTTGGCGGAAGCAGCGGccgctggggagggaggagcagc
atcATATGCGATGACAGTCCCGCAAAGTGACACAAACAAGCAATGGTTTG
CCGGTCAACACGATAGAATGGTTGCAGAAGGCCATGCTGATTCGTACGGC
AAGGCTCAAATCAACGAAAAACTCATGCGGTTGTCTCGAGCCCAACCGTA
CTACAAGCGAAATTTGCCGCACAAATGCACGTTCTATGCCAAGGGAGAGT
GCACACGTGGGGACCGTTGTCCATTTTTGTAAGTACTATAGATGATAGCC
GAGCTTAAGCCAAAGGGACAGCCCTTTTGTGTGTGCGTGTGCAttgtggg
ggggaagggaaaggggcaaaGTCTTTTGAAGATGGAAGATGGCAGGGGAA
GCCAGAACTCCTCAGGCGAGACGTGTCGTGCATACGAGTGTCTTATCCCG
TAGTCCTGGATGTGATTCACTGGATTCGATCCCCGAGGCACTCGCCTTCT
CTTTACGCAGCCATTGTGGCGGCACGGCCATGATTACACTTCTTTCATCT
CGGCGTGGGGTCGGGGGCGTCTTCGGCTCGAGTCCCTACCAGTCTTCATC
CCCTTTTCAAGGGATGGAGCAGGCTGGCGATTCGCTGGGGTCGTCCTCCT
TTGTGTGCCCCGTGCTCCGTACGGGGGATTCGTGCCCCGGGTGGGGATTG
AAACGCGACCATACTCTCTGAGCCTGtcgtcattcgcgccatttcccagc
cctttcctttctcttcgccCGGGATCATCCGACCGTACCAGCAGTCTGTA
CCTACAAAGGCCTCCATTTgatgcttcttcctttttccctcttctttgca
gGCATGAGATGCCCACGTCCCGCAGTGATCCCCTGGCCAACCAGAACATC
AAAGACCGCTTCTACGGGCAGGACGACCCCGTGGCCCAGAAAATGTTGGG
CCGGGCGGCatcgaaggagaaagaggaccaGGCACCCCTGATCCCGCCCA
CGGACCCCGAGATCAAGACGCTGATGGtcggggggatggaggggggggcg
gtcaCGGAGACGGAGATGCGCGAAGCTTTTTACGGCTTTGGAGAGGTGGC
CGGCGTCCGCATGGTCCCGGCCAAGCACCTTGCCTTTGTCGAGTACACCA
CCCgtgaggcggcggaggcggcggcaaaGGCCCTGCACAACAACCTTACG
TTGCAAGGGCTACGTTTGCGTGTGTCCTGGGCCCTTCGACCGGCGGGCTC
TGGCCCCTTCAATCCAGGCACTGGCACGGGGAGCTTCGCCAGTgcgggcg
gcgcgggccCCCTTGGCGCCCCACCGGACTTCGCAAATCAACCTGTCAGC
ACGATGGCAGGGCagtcccttcctttgccaccGCCTCAGCCTCTGAATTT
CCCGCCTggaccctcgccctcttcttgGGTACCCGGGAGCAAcacgcttc
cccctcctggtGGCTATCCGCCACCCGGGCCTCACCCAGGGCAAGGTGGC
GTGCGAGgtcccccctctctgcctcccccgcAGCAGGTAGGCATTtgggg
aaggcgaagagggaaggaatgtcTTGGCCGTGCGGGTctaggaaggagga
tgtgatGATTCATAACCAGCTACTCTGAAACAAGCTTTTAGTCGGCTTAA
CAAAACCGTGTAGTAATCTTCAGATATCTCGAACTACTAGATGGGCTGAT
CCTCTCTCGACAGAATGTTGGACGCGTAGAGCTGCTGCTCTTCGTATGGC
ATATTTGAGAAATTTCTTGTCACAACTTTCCGTCTCGTTCGCTCTTACAT
GCCTTACATGATTCCAACAGCCGTATTATCCCTCTATGGATCCTCAACGT
ATGGGCGCACGACTTCCGCCTCAGAACCAAGCTGCTTCCTCCGGTCCTAG
GGACCGCTGAGTTTGAATGAAAGGAGAGACAAAGGCTGATGAAAGGAGAG
CTGTGAACCTCGCGAGGACGGGATCGACAGGGCTTGCCCCGTCAAAGAAG
CGGATACCTGGATTTGTACAGATATCGAGGCTCATATTTTACAGTTTGTA
CTATGGTCGCAATTAAATGGATGGCGATGTGTGCGATGAACCATTGACTA
GAGAAAAGATAGAAATTGGGTGCCTTGACACATCTTTGTCTTTTGTTTTT
CGCGCTCCTGCAGAGAGGTCGCTTACACCCACTGGTGTGTTCTTAGTTCC
TCACGAAGTCCACGAGGATTCAACCACTAGCTTCTACATACGGCCATCAA
CGTTCAATTACATCAAACTTTTGAATTTACTATGATTGCATTATATCACA
TC

Coding sequence (CDS) from alignment at CM002458.1:925317..928068+

>rna2118 ID=rna2118|Name=rna2118|organism=Nannochloropsis gaditana|type=CDS|length=4041bp|location=Sequence derived from alignment at CM002458.1:925317..928068+ (Nannochloropsis gaditana)
ATGGGGGAACGAGGCATGCAAATAAAGGCGGATTTGAATaaggaaggatg
ggaatCGAGTGACTTCCCTTTGGTATGCGAGACGTGTCTGGGGGACAATC
CCTACGTCCGCATGACCAAGGAACCTGCGGGCAAGGCTTGCAAGATATGT
GACAGGCCATTCACCATTTTTCGGTGGCGCCCGGGGGCCAAGGCCCGCTT
CAAGAAGACGGAGGTGTGCCAAACTTGTGCGAAAATGAAGAACGTCTGCC
AAACTTGTGTTCTGGATTTGACTTACGGCTTGCCCGTTCAAGTACGGGAC
TCTGTCTTGGCGGAAGCAGCGGccgctggggagggaggagcagcatcATA
TGCGATGACAGTCCCGCAAAGTGACACAAACAAGCAATGGTTTGCCGGTC
AACACGATAGAATGGTTGCAGAAGGCCATGCTGATTCGTACGGCAAGGCT
CAAATCAACGAAAAACTCATGCGGTTGTCTCGAGCCCAACCGTACTACAA
GCGAAATTTGCCGCACAAATGCACGTTCTATGCCAAGGGAGAGTGCACAC
GTGGGGACCGTTGTCCATTTTTGCATGAGATGCCCACGTCCCGCAGTGAT
CCCCTGGCCAACCAGAACATCAAAGACCGCTTCTACGGGCAGGACGACCC
CGTGGCCCAGAAAATGTTGGGCCGGGCGGCatcgaaggagaaagaggacc
aGGCACCCCTGATCCCGCCCACGGACCCCGAGATCAAGACGCTGATGGtc
ggggggatggaggggggggcggtcaCGGAGACGGAGATGCGCGAAGCTTT
TTACGGCTTTGGAGAGGTGGCCGGCGTCCGCATGGTCCCGGCCAAGCACC
TTGCCTTTGTCGAGTACACCACCCgtgaggcggcggaggcggcggcaaaG
GCCCTGCACAACAACCTTACGTTGCAAGGGCTACGTTTGCGTGTGTCCTG
GGCCCTTCGACCGGCGGGCTCTGGCCCCTTCAATCCAGGCACTGGCACGG
GGAGCTTCGCCAGTgcgggcggcgcgggccCCCTTGGCGCCCCACCGGAC
TTCGCAAATCAACCTGTCAGCACGATGGCAGGGCagtcccttcctttgcc
accGCCTCAGCCTCTGAATTTCCCGCCTggaccctcgccctcttcttgGG
TACCCGGGAGCAAcacgcttccccctcctggtGGCTATCCGCCACCCGGG
CCTCACCCAGGGCAAGGTGGCGTGCGAGgtcccccctctctgcctccccc
gcAGCAGCCGTATTATCCCTCTATGGATCCTCAACGTATGGGCGCACGAC
TTCCGCCTCAGAACCAAGCTGCTTCCTCCGGTCCTAGGGACCGCTGAATG
GGGGAACGAGGCATGCAAATAAAGGCGGATTTGAATaaggaaggatggga
atCGAGTGACTTCCCTTTGGTATGCGAGACGTGTCTGGGGGACAATCCCT
ACGTCCGCATGACCAAGGAACCTGCGGGCAAGGCTTGCAAGATATGTGAC
AGGCCATTCACCATTTTTCGGTGGCGCCCGGGGGCCAAGGCCCGCTTCAA
GAAGACGGAGGTGTGCCAAACTTGTGCGAAAATGAAGAACGTCTGCCAAA
CTTGTGTTCTGGATTTGACTTACGGCTTGCCCGTTCAAGTACGGGACTCT
GTCTTGGCGGAAGCAGCGGccgctggggagggaggagcagcatcATATGC
GATGACAGTCCCGCAAAGTGACACAAACAAGCAATGGTTTGCCGGTCAAC
ACGATAGAATGGTTGCAGAAGGCCATGCTGATTCGTACGGCAAGGCTCAA
ATCAACGAAAAACTCATGCGGTTGTCTCGAGCCCAACCGTACTACAAGCG
AAATTTGCCGCACAAATGCACGTTCTATGCCAAGGGAGAGTGCACACGTG
GGGACCGTTGTCCATTTTTGCATGAGATGCCCACGTCCCGCAGTGATCCC
CTGGCCAACCAGAACATCAAAGACCGCTTCTACGGGCAGGACGACCCCGT
GGCCCAGAAAATGTTGGGCCGGGCGGCatcgaaggagaaagaggaccaGG
CACCCCTGATCCCGCCCACGGACCCCGAGATCAAGACGCTGATGGtcggg
gggatggaggggggggcggtcaCGGAGACGGAGATGCGCGAAGCTTTTTA
CGGCTTTGGAGAGGTGGCCGGCGTCCGCATGGTCCCGGCCAAGCACCTTG
CCTTTGTCGAGTACACCACCCgtgaggcggcggaggcggcggcaaaGGCC
CTGCACAACAACCTTACGTTGCAAGGGCTACGTTTGCGTGTGTCCTGGGC
CCTTCGACCGGCGGGCTCTGGCCCCTTCAATCCAGGCACTGGCACGGGGA
GCTTCGCCAGTgcgggcggcgcgggccCCCTTGGCGCCCCACCGGACTTC
GCAAATCAACCTGTCAGCACGATGGCAGGGCagtcccttcctttgccacc
GCCTCAGCCTCTGAATTTCCCGCCTggaccctcgccctcttcttgGGTAC
CCGGGAGCAAcacgcttccccctcctggtGGCTATCCGCCACCCGGGCCT
CACCCAGGGCAAGGTGGCGTGCGAGgtcccccctctctgcctcccccgcA
GCAGCCGTATTATCCCTCTATGGATCCTCAACGTATGGGCGCACGACTTC
CGCCTCAGAACCAAGCTGCTTCCTCCGGTCCTAGGGACCGCTGAATGGGG
GAACGAGGCATGCAAATAAAGGCGGATTTGAATaaggaaggatgggaatC
GAGTGACTTCCCTTTGGTATGCGAGACGTGTCTGGGGGACAATCCCTACG
TCCGCATGACCAAGGAACCTGCGGGCAAGGCTTGCAAGATATGTGACAGG
CCATTCACCATTTTTCGGTGGCGCCCGGGGGCCAAGGCCCGCTTCAAGAA
GACGGAGGTGTGCCAAACTTGTGCGAAAATGAAGAACGTCTGCCAAACTT
GTGTTCTGGATTTGACTTACGGCTTGCCCGTTCAAGTACGGGACTCTGTC
TTGGCGGAAGCAGCGGccgctggggagggaggagcagcatcATATGCGAT
GACAGTCCCGCAAAGTGACACAAACAAGCAATGGTTTGCCGGTCAACACG
ATAGAATGGTTGCAGAAGGCCATGCTGATTCGTACGGCAAGGCTCAAATC
AACGAAAAACTCATGCGGTTGTCTCGAGCCCAACCGTACTACAAGCGAAA
TTTGCCGCACAAATGCACGTTCTATGCCAAGGGAGAGTGCACACGTGGGG
ACCGTTGTCCATTTTTGCATGAGATGCCCACGTCCCGCAGTGATCCCCTG
GCCAACCAGAACATCAAAGACCGCTTCTACGGGCAGGACGACCCCGTGGC
CCAGAAAATGTTGGGCCGGGCGGCatcgaaggagaaagaggaccaGGCAC
CCCTGATCCCGCCCACGGACCCCGAGATCAAGACGCTGATGGtcgggggg
atggaggggggggcggtcaCGGAGACGGAGATGCGCGAAGCTTTTTACGG
CTTTGGAGAGGTGGCCGGCGTCCGCATGGTCCCGGCCAAGCACCTTGCCT
TTGTCGAGTACACCACCCgtgaggcggcggaggcggcggcaaaGGCCCTG
CACAACAACCTTACGTTGCAAGGGCTACGTTTGCGTGTGTCCTGGGCCCT
TCGACCGGCGGGCTCTGGCCCCTTCAATCCAGGCACTGGCACGGGGAGCT
TCGCCAGTgcgggcggcgcgggccCCCTTGGCGCCCCACCGGACTTCGCA
AATCAACCTGTCAGCACGATGGCAGGGCagtcccttcctttgccaccGCC
TCAGCCTCTGAATTTCCCGCCTggaccctcgccctcttcttgGGTACCCG
GGAGCAAcacgcttccccctcctggtGGCTATCCGCCACCCGGGCCTCAC
CCAGGGCAAGGTGGCGTGCGAGgtcccccctctctgcctcccccgcAGCA
GCCGTATTATCCCTCTATGGATCCTCAACGTATGGGCGCACGACTTCCGC
CTCAGAACCAAGCTGCTTCCTCCGGTCCTAGGGACCGCTGA

Synonyms

Publications