EWM28565.1, cds2110 (CDS) Nannochloropsis gaditana

Overview
NameEWM28565.1
Unique Namecds2110
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:925473..926044 +
Alignment locationCM002458.1:926618..927302 +
Alignment locationCM002458.1:927587..927676 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28565.1
Productzinc finger ccch domain-containing protein
Orig transcript idgnl|cribi|Naga_100009g42.608.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:925473..926044 +
CM002458.1supercontigCM002458.1:926618..927302 +
CM002458.1supercontigCM002458.1:927587..927676 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
IPR000571Znf_CCCH
Homology
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|585110983|gb|EWM28565.1| (zinc finger ccch domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 0
Query:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448
            MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR
Sbjct:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|553188839|ref|XP_005854877.1| (pre-mRNA-splicing factor RBM22/SLT11 [Nannochloropsis gaditana CCMP526] >gi|422294185|gb|EKU21485.1| pre-mRNA-splicing factor RBM22/SLT11 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 447/448 (99.78%), Postives = 447/448 (99.78%), Query Frame = 0
Query:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448
            MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALR AGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR
Sbjct:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRQAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|298710981|emb|CBJ32288.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 382.104 bits (980), Expect = 5.930e-125
Identity = 185/325 (56.92%), Postives = 236/325 (72.62%), Query Frame = 0
Query:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSG 325
            MGERG Q+K   NK+ WE SDFP+VCETCLGDNPYVRMTKEP GKACKIC+RP+T+FRW+ G   R K T++CQTCAK+KN CQTCVLDL YGLPV+VRD  LAE             + VP SD N+++    H++ +AEG  + Y    +N+KL+R++R+ PYYKRN PHKC+FYAKGEC RG +CPFLHEMPT R+DPLA+QNI+DRFYGQDDPVA KM+ R     ++D   L PP D  I +L +G M    +T  ++R+AFY FGE+  +R+VP K  AFV++TTR+AAEAAA+ L+  L ++G  LR++WA R   SG
Sbjct:    1 MGERGYQLKGANNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYTVFRWKAGTTGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEED----------RLEVPGSDANREFMTQVHEKQLAEG-GNPYSNKPLNQKLLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMAR-----QDDLPKLEPPEDEGISSLWLGNM-ADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESG 308          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|802622710|ref|XP_012076257.1| (zinc finger CCCH domain-containing protein 40 [Jatropha curcas] >gi|1173830389|ref|XP_020536288.1| zinc finger CCCH domain-containing protein 40 [Jatropha curcas] >gi|643725124|gb|KDP34288.1| hypothetical protein JCGZ_12817 [Jatropha curcas])

HSP 1 Score: 379.793 bits (974), Expect = 1.677e-124
Identity = 202/438 (46.12%), Postives = 263/438 (60.05%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPG-TGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGY---PPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAAS 442
            DL  +GWE SDFP++CE+CLGDNPYVRMT+    K CKIC RPFT+FRWRPG  ARFKKTE+CQTC+K+KNVCQ C+LDL YGLPVQVRD+ L            S   ++P+SD N+++FA +HDR    G  +  SYGK + N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +A      +   L PP D  IKTL VGG++   +TE ++R+ FY  GE+  V+MVP + +AFV YTTRE AE AA+ L N L ++GLRL++ W  RP    P + G       A+   +G L         P + ++ Q   L P                PG+   PPP  Y   PPP  H               ++ +YPSMDPQRMGA +P Q+ A S
Sbjct:    8 DLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTAL----------HISSNDSIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVNDPVALKLLNKAG-----EMPSLEPPEDESIKTLYVGGLD-ARITEQDLRDQFYAHGEIESVKMVPQRAIAFVTYTTREGAEKAAEELSNRLVIKGLRLKLMWG-RPQAPKPESEGPEEVRQLAAMAHSGML---------PRAVVSQQQNHLHP----------------PGTQDQPPPMHYFNIPPPPQH---------------ERTFYPSMDPQRMGAVVPSQDGAPS 386          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1035931535|gb|OAY61121.1| (hypothetical protein MANES_01G165200 [Manihot esculenta])

HSP 1 Score: 377.096 bits (967), Expect = 1.562e-123
Identity = 202/439 (46.01%), Postives = 265/439 (60.36%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQP--YYPSMDPQRMGARLPPQNQAASSGP 445
            DL  +GWE SDFP++CE+CLGDNPYVRMT+    K CKIC RPFT+FRWRPG  ARFKK+E+CQTC+K+KNVCQ C+LDL YGLPVQVRD+ L+  +             +P+SD N+++FA +HDR    G  +  SYGKA+ N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +A      +   L PP D  I+TL VGG++   +TE ++R+ FY  GE+  ++MV  + +AFV YTTRE AE AA+ L N L ++GLRL++ W  RP    P +  +      +A   G +         P + ++ Q   L PP                GS   PPP  Y              PP  PPPQQ   +YPSMDPQRMGA +P Q+  A SGP
Sbjct:    8 DLEADGWERSDFPIICESCLGDNPYVRMTRAEFDKECKICTRPFTVFRWRPGRDARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDA----------IPKSDVNREYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGMNDPVALKLLNKAG-----EMPSLEPPEDESIRTLYVGGLDA-RITEQDLRDNFYAHGEIESIKMVSQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG-RPQAPKPESEASEEARQQAAMAHGGM--------LPRAVISQQQNQLHPP----------------GSQVQPPPMHY-----------FNIPP--PPPQQERTFYPSMDPQRMGAVVPSQD-GAPSGP 389          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|731329071|ref|XP_010675397.1| (PREDICTED: zinc finger CCCH domain-containing protein 40-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 372.859 bits (956), Expect = 4.440e-122
Identity = 201/441 (45.58%), Postives = 267/441 (60.54%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSF-ASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGY---PPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGP 445
            DL  +GWE SDFP++CE+CLGDNPYVRMTK    K CKIC RPFT+FRWRPG  AR+KK+E+CQTC+K+KNVCQ C+LDL YGLPVQVRD+ L+           +   ++P+SD NK++FA +HDR    G  +  SYGK + N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +A   +      L PP D  IKTL VGG++   +TE ++R+ FY  GE+  +RMV  +  AFV YTTREAAE +A+ L N L ++GLRL++ W  RP    P   G       A+   +G L         P + ++ Q   L        PPG S        + +PPP  Y   PPP               P  ++ +YPSMDPQRMGA +  Q++ +S+GP
Sbjct:    8 DLEADGWERSDFPIICESCLGDNPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALS----------INTHDSIPKSDVNKEYFAEEHDRKARAGLDYDSSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVAMKLLNKAGEMQT-----LEPPEDESIKTLYVGGLDA-RITEQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREAAEKSAEELSNKLVIKGLRLKLMWG-RPQQPKPETDGAEQAKQQAAVAHSGML---------PRALISQQQSQL-------HPPGTS-------QDQIPPPMPYFNIPPP---------------PQQERTFYPSMDPQRMGALVSSQDE-SSNGP 390          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1035938996|gb|OAY66116.1| (Zinc finger CCCH domain-containing protein 40 [Ananas comosus])

HSP 1 Score: 369.777 bits (948), Expect = 7.563e-121
Identity = 193/427 (45.20%), Postives = 252/427 (59.02%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLP 435
            D   +GWE SDFP++CE+CLGDNPYVRM +    K CKIC RPFT+FRWRPG  AR+KKTE+CQTC K+KNVCQ C+LDL YGLPVQVRD+ LA  +             +P+SD N+++FA +HDR    G  +  SYGK + N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP   +  L+ QNIKDR+YG +DPVA K+L +A      +   L PP D  I+TL VGG++   +TE ++R+ FY  GE+  +RMV  +  AFV YTTRE AE AA+ L N L ++G+RL++ W  RP    P  P  G+   A+    G L A      + V +       L P                PG+    PPG Y               P+ PP ++  YPSMDPQRMGA +P
Sbjct:    8 DAQADGWERSDFPIICESCLGDNPYVRMLRADYDKECKICSRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDA----------IPRSDVNREYFAEEHDRKARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMP--ETGELSQQNIKDRYYGVNDPVALKLLSKAG-----EMPSLTPPDDESIRTLYVGGLD-ARITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAERAAEELANKLVIKGVRLKLMWG-RPQAQAPSKPEDGSEDGAAGQQQGGLIAHSGMLPRAVISQQQSGEQLRP----------------PGTEQQLPPGHY------------FNIPAPPPMERALYPSMDPQRMGALVP 387          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1147573668|ref|XP_020090512.1| (zinc finger CCCH domain-containing protein 49-like [Ananas comosus] >gi|1147573670|ref|XP_020090513.1| zinc finger CCCH domain-containing protein 49-like [Ananas comosus])

HSP 1 Score: 369.007 bits (946), Expect = 1.449e-120
Identity = 193/427 (45.20%), Postives = 252/427 (59.02%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLP 435
            D   +GWE SDFP++CE+CLGDNPYVRM +    K CKIC RPFT+FRWRPG  AR+KKTE+CQTC K+KNVCQ C+LDL YGLPVQVRD+ LA  +             +P+SD N+++FA +HDR    G  +  SYGK + N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP   +  L+ QNIKDR+YG +DPVA K+L +A      +   L PP D  I+TL VGG++   +TE ++R+ FY  GE+  +RMV  +  AFV YTTRE AE AA+ L N L ++G+RL++ W  RP    P  P  G+   A+    G L A      + V +       L P                PG+    PPG Y               P+ PP ++  YPSMDPQRMGA +P
Sbjct:    8 DAQADGWERSDFPIICESCLGDNPYVRMLRADYDKECKICSRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDA----------IPRSDVNREYFAEEHDRKARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMP--ETGELSQQNIKDRYYGVNDPVALKLLSKAG-----EMPSLTPPDDESIRTLYVGGLD-ARITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAERAAEELANKLVIKGVRLKLMWG-RPQAQAPSKPEDGSEDGAAGQQQGGLIAHGGMLPRAVISQQQSGEQLRP----------------PGTEQQLPPGHY------------FNIPAPPPMERALYPSMDPQRMGALVP 387          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1201318601|gb|OVA17686.1| (RNA recognition motif domain [Macleaya cordata])

HSP 1 Score: 362.073 bits (928), Expect = 7.559e-118
Identity = 197/429 (45.92%), Postives = 252/429 (58.74%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQ 437
            DL  +GWE SDFP++CE+CLGDNPYVRMTK    K CKIC RPFT+FRWRPG  +R+KKTEVCQTC+K+KNVCQ C+LDL YGLPVQVRD+ LA  +             +P+SD N+++FA +HDR    G  +  SYGKA+ N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP   +  L+ QNIKDR+YG +DP A K+L +A      +   L PP D  IKTL VGG++   VTE ++R+ FY  GE+  VRMV  +  AFV YTTRE AE AA+ L N L ++GLRL++ W    A            +   A   G L         P + ++ Q      P               PG+   PPP  +               P  PPP++ YYPSMDPQRMGA +P Q
Sbjct:    8 DLEADGWERSDFPIICESCLGDNPYVRMTKADFDKECKICTRPFTVFRWRPGRDSRYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDA----------IPKSDVNREYFADEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPI--TGELSQQNIKDRYYGVNDPAALKLLNKAG-----EMPSLAPPEDESIKTLYVGGLD-ARVTEQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLLWGKSQAQKAELENQDDEAARQQALAHGGL--------LPRAVISQQQNQQIQP---------------PGAQDQPPPPMH-----------YFNIPPPPPPERAYYPSMDPQRMGALVPSQ 384          
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|148677878|gb|EDL09825.1| (mCG6024, isoform CRA_c [Mus musculus])

HSP 1 Score: 346.28 bits (887), Expect = 1.843e-112
Identity = 191/430 (44.42%), Postives = 253/430 (58.84%), Query Frame = 0
Query:   13 NKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADS----YGKA-QINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTG-----SFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGA 432
            N++ WE +DFP++C+TCLG+NPY+RMTKE  GK CKIC RPFT+FRW PG + RFKKTEVCQTC+K+KNVCQTC+LDL YGLP+QVRD+ L            S+   +P+SD NK+++    +R ++           GKA   ++ L++L+R  PYYKRN PH C+F+ KGEC RG+ CP+ HE PT   DPLA+QNIKDR+YG +DPVA K+L RA++  + D     PP D  I TL VGG+ G  +TET++R  FY FGE+  + +V  +  AF+++ TR+AAE AA+   N L + G RL V W    A  G      GT      +   A  A  + +PP  A +  S       P  PP  +N    P P    P       P  + P GP         PP +  P   +YPS DPQRMGA
Sbjct:   11 NRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGL------------SFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLD-----PPEDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGDQARTCARTALEVFSPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGI-APPPPPGFGPHMFHPMGP--------PPPFMRAPGPIHYPSQDPQRMGA 413          
The following BLAST results are available for this feature:
BLAST of EWM28565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110983|gb|EWM28565.1|0.000e+0100.00zinc finger ccch domain-containing protein [Nannoc... [more]
gi|553188839|ref|XP_005854877.1|0.000e+099.78pre-mRNA-splicing factor RBM22/SLT11 [Nannochlorop... [more]
gi|298710981|emb|CBJ32288.1|5.930e-12556.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|802622710|ref|XP_012076257.1|1.677e-12446.12zinc finger CCCH domain-containing protein 40 [Jat... [more]
gi|1035931535|gb|OAY61121.1|1.562e-12346.01hypothetical protein MANES_01G165200 [Manihot escu... [more]
gi|731329071|ref|XP_010675397.1|4.440e-12245.58PREDICTED: zinc finger CCCH domain-containing prot... [more]
gi|1035938996|gb|OAY66116.1|7.563e-12145.20Zinc finger CCCH domain-containing protein 40 [Ana... [more]
gi|1147573668|ref|XP_020090512.1|1.449e-12045.20zinc finger CCCH domain-containing protein 49-like... [more]
gi|1201318601|gb|OVA17686.1|7.559e-11845.92RNA recognition motif domain [Macleaya cordata][more]
gi|148677878|gb|EDL09825.1|1.843e-11244.42mCG6024, isoform CRA_c [Mus musculus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2118rna2118Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications