EWM28565.1, cds2110 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|585110983|gb|EWM28565.1| (zinc finger ccch domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0 Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 0
Query: 1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR
Sbjct: 1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|553188839|ref|XP_005854877.1| (pre-mRNA-splicing factor RBM22/SLT11 [Nannochloropsis gaditana CCMP526] >gi|422294185|gb|EKU21485.1| pre-mRNA-splicing factor RBM22/SLT11 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0 Identity = 447/448 (99.78%), Postives = 447/448 (99.78%), Query Frame = 0
Query: 1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALR AGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR
Sbjct: 1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRQAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGPRDR 448
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|298710981|emb|CBJ32288.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 382.104 bits (980), Expect = 5.930e-125 Identity = 185/325 (56.92%), Postives = 236/325 (72.62%), Query Frame = 0
Query: 1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSG 325
MGERG Q+K NK+ WE SDFP+VCETCLGDNPYVRMTKEP GKACKIC+RP+T+FRW+ G R K T++CQTCAK+KN CQTCVLDL YGLPV+VRD LAE + VP SD N+++ H++ +AEG + Y +N+KL+R++R+ PYYKRN PHKC+FYAKGEC RG +CPFLHEMPT R+DPLA+QNI+DRFYGQDDPVA KM+ R ++D L PP D I +L +G M +T ++R+AFY FGE+ +R+VP K AFV++TTR+AAEAAA+ L+ L ++G LR++WA R SG
Sbjct: 1 MGERGYQLKGANNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYTVFRWKAGTTGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEED----------RLEVPGSDANREFMTQVHEKQLAEG-GNPYSNKPLNQKLLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMAR-----QDDLPKLEPPEDEGISSLWLGNM-ADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESG 308
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|802622710|ref|XP_012076257.1| (zinc finger CCCH domain-containing protein 40 [Jatropha curcas] >gi|1173830389|ref|XP_020536288.1| zinc finger CCCH domain-containing protein 40 [Jatropha curcas] >gi|643725124|gb|KDP34288.1| hypothetical protein JCGZ_12817 [Jatropha curcas]) HSP 1 Score: 379.793 bits (974), Expect = 1.677e-124 Identity = 202/438 (46.12%), Postives = 263/438 (60.05%), Query Frame = 0
Query: 11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPG-TGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGY---PPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAAS 442
DL +GWE SDFP++CE+CLGDNPYVRMT+ K CKIC RPFT+FRWRPG ARFKKTE+CQTC+K+KNVCQ C+LDL YGLPVQVRD+ L S ++P+SD N+++FA +HDR G + SYGK + N+ +++L R PYYKRN H C+FY +GECTRG CP+ HEMP + L+ QNIKDR+YG +DPVA K+L +A + L PP D IKTL VGG++ +TE ++R+ FY GE+ V+MVP + +AFV YTTRE AE AA+ L N L ++GLRL++ W RP P + G A+ +G L P + ++ Q L P PG+ PPP Y PPP H ++ +YPSMDPQRMGA +P Q+ A S
Sbjct: 8 DLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTAL----------HISSNDSIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVNDPVALKLLNKAG-----EMPSLEPPEDESIKTLYVGGLD-ARITEQDLRDQFYAHGEIESVKMVPQRAIAFVTYTTREGAEKAAEELSNRLVIKGLRLKLMWG-RPQAPKPESEGPEEVRQLAAMAHSGML---------PRAVVSQQQNHLHP----------------PGTQDQPPPMHYFNIPPPPQH---------------ERTFYPSMDPQRMGAVVPSQDGAPS 386
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1035931535|gb|OAY61121.1| (hypothetical protein MANES_01G165200 [Manihot esculenta]) HSP 1 Score: 377.096 bits (967), Expect = 1.562e-123 Identity = 202/439 (46.01%), Postives = 265/439 (60.36%), Query Frame = 0
Query: 11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQP--YYPSMDPQRMGARLPPQNQAASSGP 445
DL +GWE SDFP++CE+CLGDNPYVRMT+ K CKIC RPFT+FRWRPG ARFKK+E+CQTC+K+KNVCQ C+LDL YGLPVQVRD+ L+ + +P+SD N+++FA +HDR G + SYGKA+ N+ +++L R PYYKRN H C+FY +GECTRG CP+ HEMP + L+ QNIKDR+YG +DPVA K+L +A + L PP D I+TL VGG++ +TE ++R+ FY GE+ ++MV + +AFV YTTRE AE AA+ L N L ++GLRL++ W RP P + + +A G + P + ++ Q L PP GS PPP Y PP PPPQQ +YPSMDPQRMGA +P Q+ A SGP
Sbjct: 8 DLEADGWERSDFPIICESCLGDNPYVRMTRAEFDKECKICTRPFTVFRWRPGRDARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDA----------IPKSDVNREYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGMNDPVALKLLNKAG-----EMPSLEPPEDESIRTLYVGGLDA-RITEQDLRDNFYAHGEIESIKMVSQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG-RPQAPKPESEASEEARQQAAMAHGGM--------LPRAVISQQQNQLHPP----------------GSQVQPPPMHY-----------FNIPP--PPPQQERTFYPSMDPQRMGAVVPSQD-GAPSGP 389
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|731329071|ref|XP_010675397.1| (PREDICTED: zinc finger CCCH domain-containing protein 40-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 372.859 bits (956), Expect = 4.440e-122 Identity = 201/441 (45.58%), Postives = 267/441 (60.54%), Query Frame = 0
Query: 11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSF-ASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGY---PPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQNQAASSGP 445
DL +GWE SDFP++CE+CLGDNPYVRMTK K CKIC RPFT+FRWRPG AR+KK+E+CQTC+K+KNVCQ C+LDL YGLPVQVRD+ L+ + ++P+SD NK++FA +HDR G + SYGK + N+ +++L R PYYKRN H C+FY +GECTRG CP+ HEMP + L+ QNIKDR+YG +DPVA K+L +A + L PP D IKTL VGG++ +TE ++R+ FY GE+ +RMV + AFV YTTREAAE +A+ L N L ++GLRL++ W RP P G A+ +G L P + ++ Q L PPG S + +PPP Y PPP P ++ +YPSMDPQRMGA + Q++ +S+GP
Sbjct: 8 DLEADGWERSDFPIICESCLGDNPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALS----------INTHDSIPKSDVNKEYFAEEHDRKARAGLDYDSSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVAMKLLNKAGEMQT-----LEPPEDESIKTLYVGGLDA-RITEQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREAAEKSAEELSNKLVIKGLRLKLMWG-RPQQPKPETDGAEQAKQQAAVAHSGML---------PRALISQQQSQL-------HPPGTS-------QDQIPPPMPYFNIPPP---------------PQQERTFYPSMDPQRMGALVSSQDE-SSNGP 390
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1035938996|gb|OAY66116.1| (Zinc finger CCCH domain-containing protein 40 [Ananas comosus]) HSP 1 Score: 369.777 bits (948), Expect = 7.563e-121 Identity = 193/427 (45.20%), Postives = 252/427 (59.02%), Query Frame = 0
Query: 11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLP 435
D +GWE SDFP++CE+CLGDNPYVRM + K CKIC RPFT+FRWRPG AR+KKTE+CQTC K+KNVCQ C+LDL YGLPVQVRD+ LA + +P+SD N+++FA +HDR G + SYGK + N+ +++L R PYYKRN H C+FY +GECTRG CP+ HEMP + L+ QNIKDR+YG +DPVA K+L +A + L PP D I+TL VGG++ +TE ++R+ FY GE+ +RMV + AFV YTTRE AE AA+ L N L ++G+RL++ W RP P P G+ A+ G L A + V + L P PG+ PPG Y P+ PP ++ YPSMDPQRMGA +P
Sbjct: 8 DAQADGWERSDFPIICESCLGDNPYVRMLRADYDKECKICSRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDA----------IPRSDVNREYFAEEHDRKARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMP--ETGELSQQNIKDRYYGVNDPVALKLLSKAG-----EMPSLTPPDDESIRTLYVGGLD-ARITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAERAAEELANKLVIKGVRLKLMWG-RPQAQAPSKPEDGSEDGAAGQQQGGLIAHSGMLPRAVISQQQSGEQLRP----------------PGTEQQLPPGHY------------FNIPAPPPMERALYPSMDPQRMGALVP 387
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1147573668|ref|XP_020090512.1| (zinc finger CCCH domain-containing protein 49-like [Ananas comosus] >gi|1147573670|ref|XP_020090513.1| zinc finger CCCH domain-containing protein 49-like [Ananas comosus]) HSP 1 Score: 369.007 bits (946), Expect = 1.449e-120 Identity = 193/427 (45.20%), Postives = 252/427 (59.02%), Query Frame = 0
Query: 11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLP 435
D +GWE SDFP++CE+CLGDNPYVRM + K CKIC RPFT+FRWRPG AR+KKTE+CQTC K+KNVCQ C+LDL YGLPVQVRD+ LA + +P+SD N+++FA +HDR G + SYGK + N+ +++L R PYYKRN H C+FY +GECTRG CP+ HEMP + L+ QNIKDR+YG +DPVA K+L +A + L PP D I+TL VGG++ +TE ++R+ FY GE+ +RMV + AFV YTTRE AE AA+ L N L ++G+RL++ W RP P P G+ A+ G L A + V + L P PG+ PPG Y P+ PP ++ YPSMDPQRMGA +P
Sbjct: 8 DAQADGWERSDFPIICESCLGDNPYVRMLRADYDKECKICSRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDA----------IPRSDVNREYFAEEHDRKARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMP--ETGELSQQNIKDRYYGVNDPVALKLLSKAG-----EMPSLTPPDDESIRTLYVGGLD-ARITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAERAAEELANKLVIKGVRLKLMWG-RPQAQAPSKPEDGSEDGAAGQQQGGLIAHGGMLPRAVISQQQSGEQLRP----------------PGTEQQLPPGHY------------FNIPAPPPMERALYPSMDPQRMGALVP 387
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|1201318601|gb|OVA17686.1| (RNA recognition motif domain [Macleaya cordata]) HSP 1 Score: 362.073 bits (928), Expect = 7.559e-118 Identity = 197/429 (45.92%), Postives = 252/429 (58.74%), Query Frame = 0
Query: 11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTGSFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGARLPPQ 437
DL +GWE SDFP++CE+CLGDNPYVRMTK K CKIC RPFT+FRWRPG +R+KKTEVCQTC+K+KNVCQ C+LDL YGLPVQVRD+ LA + +P+SD N+++FA +HDR G + SYGKA+ N+ +++L R PYYKRN H C+FY +GECTRG CP+ HEMP + L+ QNIKDR+YG +DP A K+L +A + L PP D IKTL VGG++ VTE ++R+ FY GE+ VRMV + AFV YTTRE AE AA+ L N L ++GLRL++ W A + A G L P + ++ Q P PG+ PPP + P PPP++ YYPSMDPQRMGA +P Q
Sbjct: 8 DLEADGWERSDFPIICESCLGDNPYVRMTKADFDKECKICTRPFTVFRWRPGRDSRYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDA----------IPKSDVNREYFADEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPI--TGELSQQNIKDRYYGVNDPAALKLLNKAG-----EMPSLAPPEDESIKTLYVGGLD-ARVTEQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLLWGKSQAQKAELENQDDEAARQQALAHGGL--------LPRAVISQQQNQQIQP---------------PGAQDQPPPPMH-----------YFNIPPPPPPERAYYPSMDPQRMGALVPSQ 384
BLAST of EWM28565.1 vs. NCBI_GenBank
Match: gi|148677878|gb|EDL09825.1| (mCG6024, isoform CRA_c [Mus musculus]) HSP 1 Score: 346.28 bits (887), Expect = 1.843e-112 Identity = 191/430 (44.42%), Postives = 253/430 (58.84%), Query Frame = 0
Query: 13 NKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADS----YGKA-QINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAGSGPFNPGTGTG-----SFASAGGAGPLGAPPDFANQPVSTMAGQSLPLPPPQPLNFPPGPSPSSWVPGSNTLPPPGGYPPPGPHPGQGGVRGPPSLPPPQQPYYPSMDPQRMGA 432
N++ WE +DFP++C+TCLG+NPY+RMTKE GK CKIC RPFT+FRW PG + RFKKTEVCQTC+K+KNVCQTC+LDL YGLP+QVRD+ L S+ +P+SD NK+++ +R ++ GKA ++ L++L+R PYYKRN PH C+F+ KGEC RG+ CP+ HE PT DPLA+QNIKDR+YG +DPVA K+L RA++ + D PP D I TL VGG+ G +TET++R FY FGE+ + +V + AF+++ TR+AAE AA+ N L + G RL V W A G GT + A A + +PP A + S P PP +N P P P P + P GP PP + P +YPS DPQRMGA
Sbjct: 11 NRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGL------------SFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLD-----PPEDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGDQARTCARTALEVFSPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGI-APPPPPGFGPHMFHPMGP--------PPPFMRAPGPIHYPSQDPQRMGA 413 The following BLAST results are available for this feature:
BLAST of EWM28565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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