rna2116, rna2116 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2116
Unique Name	rna2116
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2615
Alignment location	CM002458.1:923435..925202 -

Link to JBrowse

Properties


Property Name	Value
Product	GrpE nucleotide exchange factor
Orig transcript id	gnl\|cribi\|Naga_100009g43.622.mrna
Orig protein id	gnl\|cribi\|Naga_100009g43.622
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:923435..925202 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g43	gene2022	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2116	rna2116-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28579.1	cds2108	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:923435..925202-
coding sequence from alignment at CM002458.1:923435..925202-

mRNA sequence

>rna2116 ID=rna2116|Name=rna2116|organism=Nannochloropsis gaditana|type=mRNA|length=2615bp
TCCCATTATTTATTGGATTTAATAGAAGGGCAGGCATCATAAGCGAGAAC
ATGCACAGGCGTCCCTGCTTGTTCTCGCTGGACAAGTGAGGCGACACTGG
ATAGAAGCTCGGCGACCTCCCCTCAGGAAAGGTAACATAAAAGAATCTCA
CTGCACATCATGTCGGACGGCAATACTATTCCGAGCAACGTGGGGACTTA
TCTGGCAAGGCGACTGATCAATGTCGGCATCAAGGAATATTATGCCGTGC
CTGGTGACTACAACCTTTTGCTTCTGGACCAGCTCCTCTTGTTCCCCGAG
CTGAAACTCATCTCTTGCTGCAATGAGCTCAATGCGGGGTAAGTCGGGTG
CGAGGGTTCGCGCTCCAAACGTCTTGCACCACTGACAGATTCCATCCTAT
CATGTTGTATTTCTTACCATCAAAATACTCGGCAATTTCACTCCAAAGAT
ATGCCGCTGATGGCTGTGCCCGCAAAAATGGCGTTGCAGCTATGGTTGTT
ACGTATACAGTGGGCGGCTTGAGCGCAATCAATGCCATTGCTGGAGCATA
CTCCGACGACTTACCCATCATTTTCATATCTGGAGCGCCCAACTCCAACG
ATTATGCCTCGGACCGGATCCTGCATCACACAATCGGCAAGATCGATCGT
CGTCAGCAGATTGATATGTTCAGCCATGTGGTCGCCGAGGCGGTCGAAAT
CCGCTCTCCCGGTCAGGCAGCGCGTCAGATCGACCACGCGATTGTCACGG
CCATGACCCAGAAGAAACCTGTGTACCTGGATGTGGCCTGCAACATCTCC
GAGGAGCATGTCTCTTTACCCATCCCGTTCCAAATTCCTCCGCCCAAGCC
TTCCAACGCCGCCTCCTTGCGCGCGGCCGTGCAAACAACCCTGACACAGT
GGACGCATGCGGCCAAGCCTGTCATCGTCATAGGTGTGAAGGTGCGCATG
GCGGAAGCTTTCGATGCTGTCATCCAACTGGCTGATGCTGCGGGCTGCGC
GGTCGCAACCATGCCTGATGCCAAGGGTATGTTCCCTGAGGATCACCCCC
AGTACATTGGCACGTACTGGGGGCCTGTATCGAGCGTGGGGGCGGGAGAA
ACCGTGGAGAGTGCAGACATGTACATTTTTTTGGGCTCGCGCTTCAACGA
TTACAATACCACGGGGTACACGTGCCTGATCAAGAAGAAGGGCCTTGTCA
CGGCGAACGTAGACAGGGTAGAGACCCCCGGGGGGGAGTATGGGTGCGTG
AACATGGCGGAGTTTGCGGTCGCTTTGGCCAAGGTCATTCCGCGAAACGA
CGCGTCCATAAAAGCCTACACCCGAATTTTTGCGCCCGAGGCTCGGGTGG
CGGCTCGGCCGGCCGAGACGCTTTTGACGATGCGATTTGTGCACGAGCAG
GTCCAAAATTTGCTGACACCGAAAACGGCGCTGCTCGTGGAGACAGGCGA
CTCCTGGTTCCAAGGGCAAACAATGAAGCTGCCTCGTGGGTGCGGCTACG
AGTTCCAAATGCAGTACGGCTCGATCGGCTGGTCCGTCGGAGCTGTGCTT
GGGTATTCCTTAGCGGCCCAGCACGAAGGTCGGCGCGTGGTCGCCATGAT
TGGCGACGGCTCCTTTCAAATGTCGGCGCAGGAGGTCTCGACGATGATCC
GCTACGGGGCCAACCCGATTATTGTGCTTATCAACAATGGGGGGTACACA
ATCGAGGTCGAAATTCATGATGGCATCTACAACGTGATCAAGAACTGGGA
CTACAAGAAGCTCATTGATGCGTTCTGCCATGATGATGGCAAGGCCCTCA
CCATTTGTTGTAAGACGCAGGGGGAGCTATTGGAAGCGATGGAGCAGGCA
AAGACACACCCAAATTTGGTCTTCCTGGAGCTCATCCTCGACAAAGATGA
TTGCTCGAAGCATCTCCTGGAGTGGGGCTCTCGAGTGGCCACAGCAAATG
GACGCCCATTTGTGGAGCTTTAAGTGGGTCGCATGGATACATTTTTAGAT
AGTCGGGGTACAGACAAGATGTGGCCCCTGAATGAGATGATTAGATTTGA
AGTTGTGAAGGGGCTCCCGCTTGCCCTCCTTGTGCCGTGAATTATTATGA
TTGTATGACGATTGCTATGCGATGTCGTCAGATAGAGACTAGTTGAAGAC
CTCGATGGTGGGGCTGTTTGAATGAAAGCGCAAAGTGGCATGGCATATTG
ACCAAAGAATGCTTTTTTGTGCACGCGCTTCTGTGTATTTCGTGATGGAC
CCGGAAGTAAGGGCGTCGATCACTTCCATATTTGGAAGGCAATCCATTTT
TGGAAGGCATTGCCAGAGCCTCGTGTAAATGAATTTATTTTTTGGGGATA
TTTATATAAAGTAAGCCGGCGAGCCGGACATTATGGTTGTTATAAGCATG
ATCCTCGATGTGCAAGGTCTGTTGGCGGTAGGACTTTTTCGGGGGAAACG
TACGCAAGAAAATGATTTATTTGGGAAAAGGATTTCGATATAGGTGGACT
TCAACGTGCTCAGAGTCAACTCTCTACACAAGCCACTCCATATGTCGAAA
AGCAATGGAATTACTTCTTGAGCAAACTCTACGAAGATTGTAGTATCTCT
CATTGGAGTATGTCG

protein sequence of rna2116

>rna2116-protein ID=rna2116-protein|Name=rna2116|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFS
QGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSL
CNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEE
GEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQ
DRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDL
MEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAY
DEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQK
AKEEEKEEEGDSEAKEDSGQE

mRNA from alignment at CM002458.1:923435..925202-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2116 ID=rna2116|Name=rna2116|organism=Nannochloropsis gaditana|type=mRNA|length=1768bp|location=Sequence derived from alignment at CM002458.1:923435..925202- (Nannochloropsis gaditana)
AGCTTGTTTCGAGAAAGCCCTGCGAGGCGCACGCACTTGATGTTATAACC
AAGGATAATAGGGAGATCTTCGCTTGATTGACTTCCCTGACTTGCCAACT
CTTCCACATTTACGTGCATTTTTTGACAGATTTAGAGTTTTGCTCCATAA
TGCGTCGGATTCCGAAAGCCGCAACAGCAGTATCGTGCTGCCTAGTAGCC
CTGTGGTCCTACCCGACCATGGCTTGGACTTATCTTGCACCGCGCTCTAC
AATCGGTTCCAGCTGTGCTTCCAAAGATGCCATGTGCAGAGCCTTCTCCC
AGGGGACAGTGGTATCGGCCAGCAGCAGTCATTTGATCGATTCAAGCTCA
TTCAGGATGCGGGCAACCGCATCATCCCCGTTAGGGACGACAGTCCGCTC
GACGATCAATCAAAAAAGCGAACAATGTAAGTATGCCTGCACTTCGTTAT
GTAATTGTGCTACGCGGAAACGCGCGGTATTGCGTCCAAGTCGTCGGACG
CGGCTGTGGGCAACAGCACAGGATGCGGAGGAAGAGGGCTCGGAGGAGGG
GAAGAAGCGAGGGGACGAGACTGAAGACATGGATGTGGCCGCCGAGGAAG
GAGAAGGAGTGGAAGCCACTGAACAAAGTGAGGAGGAGGAGGCCGAAGAG
CTCTCCCCGGAGGACCAAGCTAAGGCCGCTTTGCGGGCGGAGTTGAAGGA
GTTGGAGAAGGAGTTAGCCAAGAAGCGGAATGAGCTGACAGAGGCCCAAG
ACCGGCTTAAAACTGTGGGGAAAGAGGGTTTTATGCGTCTTGCGGCCGAG
GTTGAGACATACAAACGCCGACGAGCGGACGGATTGACCTACGTGCGGGA
GGAAGCTGCGCAAGAAACCATGAAGCAACTGCTGCCGGTCTTCGACCTGA
TGGAGGAGCTGGAGGAGAGGTATGCGGACGTTTCCAGCGAGGCCTCTTTG
AAGGTGCTGAATGGGTACAAGAACCTCCTGCAGGTCTTTGTGGGCAAGGC
TGAGAGGCTGGGTGTCAAGGTCTTGGAGATCGGTAAGCTTCGAGACGGAC
GGCGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGG
ACGCACGATGTTTCTTTCTTGGCCGCCTTTGGCCTATCTTGGGCGACGAA
AAAGGAAACTTACATTTAAGGACCGATGGGGCAAGGTGTCGATGAGGAAC
AGGATTAATGATGCATGTATTGTCCAAGACTACGGTCATGCGGAAAAGAT
CACCTTGGAGAACTGAGACACCCCCAAAGCGCCCTCTCCTCCTCTACCTC
CCTCCTTTTCTCTCCTCCGCATCCCTTTTAATGTTACCTTCCTTCCTATC
CATCCGTACAGCGGCAGGTGATGCATATGACGAGGAGAGCATGGAGGTGG
GGGAGGTTGTGGTCGGGGAGGCGGACGGGGTGGTCGTGGAAGTGGAGCAG
AAAGGGTATCAGATCGGAGAGCGGGTGGCGCGACGGGCCAGGGTGAAGGT
GAGTGCCACGGAGGCCACGCTACAGAAGGCGAAGGAGGAGGAGAAGGAGG
AAGAGGGAGACAGCGAGGCGAAGGAGGACTCTGGCCAGGAGTAGGGGGCA
GCGGACGGCTTGAGCCTTGCGTGGCGAGGAGGAGAGGCGTGAGGCGATAT
CAAAGAGGGAGGCATGAGGAAATATGATGAGAGAGGAGCGGGGAGTATCG
CGCTTGTTGCTTATGGTCAGGGCATCCAAGACTCCGGTAGAAATGAATAA
CCGCTTTTAAGCTTGCCA

Coding sequence (CDS) from alignment at CM002458.1:923435..925202-

>rna2116 ID=rna2116|Name=rna2116|organism=Nannochloropsis gaditana|type=CDS|length=2232bp|location=Sequence derived from alignment at CM002458.1:923435..925202- (Nannochloropsis gaditana)
CGGCAGGTGATGCATATGACGAGGAGAGCATGGAGGTGGGGGAGGTTGTG
GTCGGGGAGGCGGACGGGGTGGTCGTGGAAGTGGAGCAGAAAGGGTATCA
GATCGGAGAGCGGGTGGCGCGACGGGCCAGGGTGAAGGTGAGTGCCACGG
AGGCCACGCTACAGAAGGCGAAGGAGGAGGAGAAGGAGGAAGAGGGAGAC
AGCGAGGCGAAGGAGGACTCTGGCCAGGAGTAGATGCGTCGGATTCCGAA
AGCCGCAACAGCAGTATCGTGCTGCCTAGTAGCCCTGTGGTCCTACCCGA
CCATGGCTTGGACTTATCTTGCACCGCGCTCTACAATCGGTTCCAGCTGT
GCTTCCAAAGATGCCATGTGCAGAGCCTTCTCCCAGGGGACAGTGGTATC
GGCCAGCAGCAGTCATTTGATCGATTCAAGCTCATTCAGGATGCGGGCAA
CCGCATCATCCCCGTTAGGGACGACAGTCCGCTCGACGATCAATCAAAAA
AGCGAACAATGTAAGTATGCCTGCACTTCGTTATGTAATTGTGCTACGCG
GAAACGCGCGGTATTGCGTCCAAGTCGTCGGACGCGGCTGTGGGCAACAG
CACAGGATGCGGAGGAAGAGGGCTCGGAGGAGGGGAAGAAGCGAGGGGAC
GAGACTGAAGACATGGATGTGGCCGCCGAGGAAGGAGAAGGAGTGGAAGC
CACTGAACAAAGTGAGGAGGAGGAGGCCGAAGAGCTCTCCCCGGAGGACC
AAGCTAAGGCCGCTTTGCGGGCGGAGTTGAAGGAGTTGGAGAAGGAGTTA
GCCAAGAAGCGGAATGAGCTGACAGAGGCCCAAGACCGGCTTAAAACTGT
GGGGAAAGAGGGTTTTATGCGTCTTGCGGCCGAGGTTGAGACATACAAAC
GCCGACGAGCGGACGGATTGACCTACGTGCGGGAGGAAGCTGCGCAAGAA
ACCATGAAGCAACTGCTGCCGGTCTTCGACCTGATGGAGGAGCTGGAGGA
GAGGTATGCGGACGTTTCCAGCGAGGCCTCTTTGAAGGTGCTGAATGGGT
ACAAGAACCTCCTGCAGGTCTTTGTGGGCAAGGCTGAGAGGCTGGGTGTC
AAGGTCTTGGAGATCGCGGCAGGTGATGCATATGACGAGGAGAGCATGGA
GGTGGGGGAGGTTGTGGTCGGGGAGGCGGACGGGGTGGTCGTGGAAGTGG
AGCAGAAAGGGTATCAGATCGGAGAGCGGGTGGCGCGACGGGCCAGGGTG
AAGGTGAGTGCCACGGAGGCCACGCTACAGAAGGCGAAGGAGGAGGAGAA
GGAGGAAGAGGGAGACAGCGAGGCGAAGGAGGACTCTGGCCAGGAGTAGA
TGCGTCGGATTCCGAAAGCCGCAACAGCAGTATCGTGCTGCCTAGTAGCC
CTGTGGTCCTACCCGACCATGGCTTGGACTTATCTTGCACCGCGCTCTAC
AATCGGTTCCAGCTGTGCTTCCAAAGATGCCATGTGCAGAGCCTTCTCCC
AGGGGACAGTGGTATCGGCCAGCAGCAGTCATTTGATCGATTCAAGCTCA
TTCAGGATGCGGGCAACCGCATCATCCCCGTTAGGGACGACAGTCCGCTC
GACGATCAATCAAAAAAGCGAACAATGTAAGTATGCCTGCACTTCGTTAT
GTAATTGTGCTACGCGGAAACGCGCGGTATTGCGTCCAAGTCGTCGGACG
CGGCTGTGGGCAACAGCACAGGATGCGGAGGAAGAGGGCTCGGAGGAGGG
GAAGAAGCGAGGGGACGAGACTGAAGACATGGATGTGGCCGCCGAGGAAG
GAGAAGGAGTGGAAGCCACTGAACAAAGTGAGGAGGAGGAGGCCGAAGAG
CTCTCCCCGGAGGACCAAGCTAAGGCCGCTTTGCGGGCGGAGTTGAAGGA
GTTGGAGAAGGAGTTAGCCAAGAAGCGGAATGAGCTGACAGAGGCCCAAG
ACCGGCTTAAAACTGTGGGGAAAGAGGGTTTTATGCGTCTTGCGGCCGAG
GTTGAGACATACAAACGCCGACGAGCGGACGGATTGACCTACGTGCGGGA
GGAAGCTGCGCAAGAAACCATGAAGCAACTGCTGCCGGTCTTCGACCTGA
TGGAGGAGCTGGAGGAGAGGTATGCGGACGTTTCCAGCGAGGCCTCTTTG
AAGGTGCTGAATGGGTACAAGAACCTCCTGCAGGTCTTTGTGGGCAAGGC
TGAGAGGCTGGGTGTCAAGGTCTTGGAGATCG

Synonyms

Publications