EWM28579.1, cds2108 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|585110997|gb|EWM28579.1| (GrpE nucleotide exchange factor [Nannochloropsis gaditana]) HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0 Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0
Query: 1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 371
MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE
Sbjct: 1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 371
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|585110998|gb|EWM28580.1| (GrpE nucleotide exchange factor [Nannochloropsis gaditana]) HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0 Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0
Query: 1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIA 295
MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEI
Sbjct: 1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIG 295
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|553188833|ref|XP_005854875.1| (GrpE, partial [Nannochloropsis gaditana CCMP526] >gi|422294183|gb|EKU21483.1| GrpE, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 483.797 bits (1244), Expect = 1.483e-169 Identity = 257/273 (94.14%), Postives = 262/273 (95.97%), Query Frame = 0
Query: 99 SLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 371
S + ++KR + RRTRLWATAQDAEEEGSEEGKKRGDETED VAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADV+SEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE
Sbjct: 30 SPLDDQSKKRTI----RRTRLWATAQDAEEEGSEEGKKRGDETED--VAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVTSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 296
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|512702187|ref|WP_016477583.1| (nucleotide exchange factor GrpE [Atopobium sp. oral taxon 199] >gi|512079475|gb|EPD78646.1| molecular chaperone GrpE [Atopobium sp. oral taxon 199 str. F0494]) HSP 1 Score: 75.8702 bits (185), Expect = 6.863e-12 Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 0
Query: 158 EQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESME-VGEVVVGEA-DGVVVEVEQKGYQIGERVARRARVKVS 342
EQ+E E AE+ + + AL+++L + ++ + E +EA DR FMRL A+ + Y+RR A RE A ++ + +LLPV D +E E +++ S++ + G + V + GV V++ AG+A+D S + VG+V EA D V +V QKGY++G +V R A V V+
Sbjct: 78 EQAEREIAEDANKARAERDALQSQLDSMADQIEAAKKEASEATDR--------FMRLQADWDNYRRRTAQERLDERERATEKLVIELLPVIDDLERAIEHADNLTDSQSVQFVEGVSAVKNKLVDVLNKEGVNVID-PAGEAFDPLSHQAVGQVEDAEAYDESVAQVYQKGYRMGGKVIRTAMVTVT 255
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|928952295|ref|WP_053977018.1| (MULTISPECIES: nucleotide exchange factor GrpE [Mangrovimonas] >gi|1137356487|gb|OMP30515.1| nucleotide exchange factor GrpE [Mangrovimonas sp. DI 80]) HSP 1 Score: 72.7886 bits (177), Expect = 1.251e-11 Identity = 43/137 (31.39%), Postives = 80/137 (58.39%), Query Frame = 0
Query: 208 KEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESME-VGEVVVGEAD--GVVVEVEQKGYQIGERVARRARVKV 341
K+ FMRL AE E YKRR + + + A+++ MK +LPV D + + Y+++S + +L G + + Q ++ G+ +E+AAGDA++ + E V ++ D G +++V +KGY++G++V R +V +
Sbjct: 48 KDKFMRLFAEFENYKRRTSKERVELFKTASEDVMKAMLPVLD---DFDRAYSEISKSDAEDLLKGVELIRQKLKSTLQQKGLSEIEVAAGDAFNADDHEAVTQIPAPNEDLKGKIIDVIEKGYKLGDKVIRFPKVVI 181
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|928967653|ref|WP_053992171.1| (nucleotide exchange factor GrpE [Mangrovimonas sp. TPBH4]) HSP 1 Score: 72.4034 bits (176), Expect = 2.227e-11 Identity = 42/137 (30.66%), Postives = 79/137 (57.66%), Query Frame = 0
Query: 208 KEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESME-VGEVVVGEAD--GVVVEVEQKGYQIGERVARRARVKV 341
K+ FMRL AE E YKRR + + + A+++ MK +LPV D + + YA++S + +L G + + Q ++ G+ +E+ AGDA++ + E V ++ D G +++V +KGY++G+++ R +V +
Sbjct: 48 KDKFMRLFAEFENYKRRTSKERVELFKTASEDVMKSMLPVLD---DFDRAYAEISKSDAEDLLKGVELIRQKLKSTLQQKGLSEIEVTAGDAFNADDHEAVTQIPAPSEDLKGKIIDVIEKGYKLGDKIIRFPKVVI 181
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|356504248|ref|XP_003520909.1| (PREDICTED: protein GrpE isoform X1 [Glycine max] >gi|947116701|gb|KRH64950.1| hypothetical protein GLYMA_03G005900 [Glycine max]) HSP 1 Score: 74.3294 bits (181), Expect = 3.815e-11 Identity = 65/219 (29.68%), Postives = 115/219 (52.51%), Query Frame = 0
Query: 166 EELSPEDQAKAA-LRAELK-------ELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRA-DGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEA-----DGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQ 370
E L+ D+ K A L + LK ELE ++A EL+ +DR+ +R++A+ + +++R D L+ V A E ++ LLPV D + + + V +E K+ N Y+++ + F+ LGV+ +E G +D + E ++ E DG++++ +KG+++GER+ R + VKVSA + +E +EE G++E EDS Q
Sbjct: 122 EALANNDEVKIAELESSLKSVEDEKIELEVKIASLSEELSVEKDRI--------LRISADFDNFRKRTERDRLSLVTN-AQGEVVESLLPVLDNFDRAKTQIK-VETEGEEKINNSYQSIYKQFIEILNSLGVEPVE-TVGTPFDPL---LHEAIMREDSDEFEDGIIIQEFRKGFKLGERLLRPSMVKVSAGPGPAKPEQEAPQEEHGNTEISEDSKQ 326
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|734423266|gb|KHN42170.1| (Protein grpE [Glycine soja]) HSP 1 Score: 74.3294 bits (181), Expect = 3.832e-11 Identity = 65/219 (29.68%), Postives = 115/219 (52.51%), Query Frame = 0
Query: 166 EELSPEDQAKAA-LRAELK-------ELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRA-DGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEA-----DGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQ 370
E L+ D+ K A L + LK ELE ++A EL+ +DR+ +R++A+ + +++R D L+ V A E ++ LLPV D + + + V +E K+ N Y+++ + F+ LGV+ +E G +D + E ++ E DG++++ +KG+++GER+ R + VKVSA + +E +EE G++E EDS Q
Sbjct: 119 EALANNDEVKIAELESSLKSVEDEKIELEVKIASLSEELSVEKDRI--------LRISADFDNFRKRTERDRLSLVTN-AQGEVVESLLPVLDNFDRAKTQIK-VETEGEEKINNSYQSIYKQFIEILNSLGVEPVE-TVGTPFDPL---LHEAIMREDSDEFEDGIIIQEFRKGFKLGERLLRPSMVKVSAGPGPAKPEQEAPQEEHGNTEISEDSKQ 323
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|646882812|ref|WP_025607872.1| (nucleotide exchange factor GrpE [Pontibacter actiniarum] >gi|1195001060|gb|ARS36344.1| nucleotide exchange factor GrpE [Pontibacter actiniarum]) HSP 1 Score: 70.0922 bits (170), Expect = 1.462e-10 Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 0
Query: 208 KEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERY-ADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEAD---GVVVEVEQKGYQIGERVARRARVKVSA 343
K+ F+RL AE E ++RR A + + A+Q+ M LLPV D ME + A V +A +L G + + ++ G+K +E AGD +D E E + +D G +V+V +KGY + E+V R A+V + A
Sbjct: 52 KDKFVRLMAEFENFRRRTAKERLELAKTASQDVMSDLLPVLDDMERARQSIEAKVDPDA---ILQGLELVFHKLKHVTQQKGLKPMETKAGDEFDSELHEAVTQIPAPSDELKGKIVDVIEKGYTLNEKVIRFAKVIIGA 188
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|737345677|ref|WP_035327963.1| (nucleotide exchange factor GrpE [Dokdonia donghaensis] >gi|700265707|gb|KGO07661.1| molecular chaperone GrpE [Dokdonia donghaensis DSW-1] >gi|1033645639|gb|ANH60392.1| heat shock protein GrpE [Dokdonia donghaensis DSW-1]) HSP 1 Score: 69.707 bits (169), Expect = 1.973e-10 Identity = 64/211 (30.33%), Postives = 103/211 (48.82%), Query Frame = 0
Query: 136 KRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFD----LMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEA---DGVVVEVEQKGYQIGERVARRARV 339
K+ D T +D AA+E EA + +E +EAE+ +P+D+ R EL AQD L K+ F+RL AE E YKRR + + A QE ++ LLPV D + E + DV + + N +K L+ G++ +E+ AGDA+D + E + + G +V+V +KGY++G+++ R +V
Sbjct: 6 KKQDTT--VDEAAQEQLVNEAEQANETKEAEDAAPKDE-------------------RTELEVAQDDL-AAEKDKFLRLFAEFENYKRRTTKERIELYKTAGQEVIQALLPVVDDFDRALNEFKGDKDDVHVKGMTLISNKFKETLK-------SKGLEEMEVKAGDAFDADQHEAITQIPAPSKKLKGKIVDVIEKGYKLGDKIIRFPKV 187 The following BLAST results are available for this feature:
BLAST of EWM28579.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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