EWM28579.1, cds2108 (CDS) Nannochloropsis gaditana

Overview
NameEWM28579.1
Unique Namecds2108
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:924171..925053 -
Alignment locationCM002458.1:923609..923841 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28579.1
ProductGrpE nucleotide exchange factor
Orig transcript idgnl|cribi|Naga_100009g43.622.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:924171..925053 -
CM002458.1supercontigCM002458.1:923609..923841 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0042803protein homodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR009012GrpE_head
IPR000740GrpE
Homology
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|585110997|gb|EWM28579.1| (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0
Query:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 371
            MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE
Sbjct:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 371          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|585110998|gb|EWM28580.1| (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0
Query:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIA 295
            MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEI 
Sbjct:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIG 295          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|553188833|ref|XP_005854875.1| (GrpE, partial [Nannochloropsis gaditana CCMP526] >gi|422294183|gb|EKU21483.1| GrpE, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 483.797 bits (1244), Expect = 1.483e-169
Identity = 257/273 (94.14%), Postives = 262/273 (95.97%), Query Frame = 0
Query:   99 SLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 371
            S  +  ++KR +    RRTRLWATAQDAEEEGSEEGKKRGDETED  VAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADV+SEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE
Sbjct:   30 SPLDDQSKKRTI----RRTRLWATAQDAEEEGSEEGKKRGDETED--VAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVTSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQE 296          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|512702187|ref|WP_016477583.1| (nucleotide exchange factor GrpE [Atopobium sp. oral taxon 199] >gi|512079475|gb|EPD78646.1| molecular chaperone GrpE [Atopobium sp. oral taxon 199 str. F0494])

HSP 1 Score: 75.8702 bits (185), Expect = 6.863e-12
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 0
Query:  158 EQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESME-VGEVVVGEA-DGVVVEVEQKGYQIGERVARRARVKVS 342
            EQ+E E AE+ +     + AL+++L  +  ++   + E +EA DR        FMRL A+ + Y+RR A      RE A ++ + +LLPV D +E   E   +++   S++ + G   +    V    + GV V++  AG+A+D  S + VG+V   EA D  V +V QKGY++G +V R A V V+
Sbjct:   78 EQAEREIAEDANKARAERDALQSQLDSMADQIEAAKKEASEATDR--------FMRLQADWDNYRRRTAQERLDERERATEKLVIELLPVIDDLERAIEHADNLTDSQSVQFVEGVSAVKNKLVDVLNKEGVNVID-PAGEAFDPLSHQAVGQVEDAEAYDESVAQVYQKGYRMGGKVIRTAMVTVT 255          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|928952295|ref|WP_053977018.1| (MULTISPECIES: nucleotide exchange factor GrpE [Mangrovimonas] >gi|1137356487|gb|OMP30515.1| nucleotide exchange factor GrpE [Mangrovimonas sp. DI 80])

HSP 1 Score: 72.7886 bits (177), Expect = 1.251e-11
Identity = 43/137 (31.39%), Postives = 80/137 (58.39%), Query Frame = 0
Query:  208 KEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESME-VGEVVVGEAD--GVVVEVEQKGYQIGERVARRARVKV 341
            K+ FMRL AE E YKRR +     + + A+++ MK +LPV D   + +  Y+++S   +  +L G + + Q      ++ G+  +E+AAGDA++ +  E V ++     D  G +++V +KGY++G++V R  +V +
Sbjct:   48 KDKFMRLFAEFENYKRRTSKERVELFKTASEDVMKAMLPVLD---DFDRAYSEISKSDAEDLLKGVELIRQKLKSTLQQKGLSEIEVAAGDAFNADDHEAVTQIPAPNEDLKGKIIDVIEKGYKLGDKVIRFPKVVI 181          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|928967653|ref|WP_053992171.1| (nucleotide exchange factor GrpE [Mangrovimonas sp. TPBH4])

HSP 1 Score: 72.4034 bits (176), Expect = 2.227e-11
Identity = 42/137 (30.66%), Postives = 79/137 (57.66%), Query Frame = 0
Query:  208 KEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESME-VGEVVVGEAD--GVVVEVEQKGYQIGERVARRARVKV 341
            K+ FMRL AE E YKRR +     + + A+++ MK +LPV D   + +  YA++S   +  +L G + + Q      ++ G+  +E+ AGDA++ +  E V ++     D  G +++V +KGY++G+++ R  +V +
Sbjct:   48 KDKFMRLFAEFENYKRRTSKERVELFKTASEDVMKSMLPVLD---DFDRAYAEISKSDAEDLLKGVELIRQKLKSTLQQKGLSEIEVTAGDAFNADDHEAVTQIPAPSEDLKGKIIDVIEKGYKLGDKIIRFPKVVI 181          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|356504248|ref|XP_003520909.1| (PREDICTED: protein GrpE isoform X1 [Glycine max] >gi|947116701|gb|KRH64950.1| hypothetical protein GLYMA_03G005900 [Glycine max])

HSP 1 Score: 74.3294 bits (181), Expect = 3.815e-11
Identity = 65/219 (29.68%), Postives = 115/219 (52.51%), Query Frame = 0
Query:  166 EELSPEDQAKAA-LRAELK-------ELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRA-DGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEA-----DGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQ 370
            E L+  D+ K A L + LK       ELE ++A    EL+  +DR+        +R++A+ + +++R   D L+ V   A  E ++ LLPV D  +  + +   V +E   K+ N Y+++ + F+     LGV+ +E   G  +D     + E ++ E      DG++++  +KG+++GER+ R + VKVSA     +  +E  +EE G++E  EDS Q
Sbjct:  122 EALANNDEVKIAELESSLKSVEDEKIELEVKIASLSEELSVEKDRI--------LRISADFDNFRKRTERDRLSLVTN-AQGEVVESLLPVLDNFDRAKTQIK-VETEGEEKINNSYQSIYKQFIEILNSLGVEPVE-TVGTPFDPL---LHEAIMREDSDEFEDGIIIQEFRKGFKLGERLLRPSMVKVSAGPGPAKPEQEAPQEEHGNTEISEDSKQ 326          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|734423266|gb|KHN42170.1| (Protein grpE [Glycine soja])

HSP 1 Score: 74.3294 bits (181), Expect = 3.832e-11
Identity = 65/219 (29.68%), Postives = 115/219 (52.51%), Query Frame = 0
Query:  166 EELSPEDQAKAA-LRAELK-------ELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRA-DGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEA-----DGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKEDSGQ 370
            E L+  D+ K A L + LK       ELE ++A    EL+  +DR+        +R++A+ + +++R   D L+ V   A  E ++ LLPV D  +  + +   V +E   K+ N Y+++ + F+     LGV+ +E   G  +D     + E ++ E      DG++++  +KG+++GER+ R + VKVSA     +  +E  +EE G++E  EDS Q
Sbjct:  119 EALANNDEVKIAELESSLKSVEDEKIELEVKIASLSEELSVEKDRI--------LRISADFDNFRKRTERDRLSLVTN-AQGEVVESLLPVLDNFDRAKTQIK-VETEGEEKINNSYQSIYKQFIEILNSLGVEPVE-TVGTPFDPL---LHEAIMREDSDEFEDGIIIQEFRKGFKLGERLLRPSMVKVSAGPGPAKPEQEAPQEEHGNTEISEDSKQ 323          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|646882812|ref|WP_025607872.1| (nucleotide exchange factor GrpE [Pontibacter actiniarum] >gi|1195001060|gb|ARS36344.1| nucleotide exchange factor GrpE [Pontibacter actiniarum])

HSP 1 Score: 70.0922 bits (170), Expect = 1.462e-10
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 0
Query:  208 KEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERY-ADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEAD---GVVVEVEQKGYQIGERVARRARVKVSA 343
            K+ F+RL AE E ++RR A     + + A+Q+ M  LLPV D ME   +   A V  +A   +L G + +        ++ G+K +E  AGD +D E  E    +   +D   G +V+V +KGY + E+V R A+V + A
Sbjct:   52 KDKFVRLMAEFENFRRRTAKERLELAKTASQDVMSDLLPVLDDMERARQSIEAKVDPDA---ILQGLELVFHKLKHVTQQKGLKPMETKAGDEFDSELHEAVTQIPAPSDELKGKIVDVIEKGYTLNEKVIRFAKVIIGA 188          
BLAST of EWM28579.1 vs. NCBI_GenBank
Match: gi|737345677|ref|WP_035327963.1| (nucleotide exchange factor GrpE [Dokdonia donghaensis] >gi|700265707|gb|KGO07661.1| molecular chaperone GrpE [Dokdonia donghaensis DSW-1] >gi|1033645639|gb|ANH60392.1| heat shock protein GrpE [Dokdonia donghaensis DSW-1])

HSP 1 Score: 69.707 bits (169), Expect = 1.973e-10
Identity = 64/211 (30.33%), Postives = 103/211 (48.82%), Query Frame = 0
Query:  136 KRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFD----LMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEA---DGVVVEVEQKGYQIGERVARRARV 339
            K+ D T  +D AA+E    EA + +E +EAE+ +P+D+                   R EL  AQD L    K+ F+RL AE E YKRR       + + A QE ++ LLPV D     + E +    DV  +    + N +K  L+         G++ +E+ AGDA+D +  E    +   +    G +V+V +KGY++G+++ R  +V
Sbjct:    6 KKQDTT--VDEAAQEQLVNEAEQANETKEAEDAAPKDE-------------------RTELEVAQDDL-AAEKDKFLRLFAEFENYKRRTTKERIELYKTAGQEVIQALLPVVDDFDRALNEFKGDKDDVHVKGMTLISNKFKETLK-------SKGLEEMEVKAGDAFDADQHEAITQIPAPSKKLKGKIVDVIEKGYKLGDKIIRFPKV 187          
The following BLAST results are available for this feature:
BLAST of EWM28579.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110997|gb|EWM28579.1|0.000e+0100.00GrpE nucleotide exchange factor [Nannochloropsis g... [more]
gi|585110998|gb|EWM28580.1|0.000e+099.66GrpE nucleotide exchange factor [Nannochloropsis g... [more]
gi|553188833|ref|XP_005854875.1|1.483e-16994.14GrpE, partial [Nannochloropsis gaditana CCMP526] >... [more]
gi|512702187|ref|WP_016477583.1|6.863e-1233.16nucleotide exchange factor GrpE [Atopobium sp. ora... [more]
gi|928952295|ref|WP_053977018.1|1.251e-1131.39MULTISPECIES: nucleotide exchange factor GrpE [Man... [more]
gi|928967653|ref|WP_053992171.1|2.227e-1130.66nucleotide exchange factor GrpE [Mangrovimonas sp.... [more]
gi|356504248|ref|XP_003520909.1|3.815e-1129.68PREDICTED: protein GrpE isoform X1 [Glycine max] >... [more]
gi|734423266|gb|KHN42170.1|3.832e-1129.68Protein grpE [Glycine soja][more]
gi|646882812|ref|WP_025607872.1|1.462e-1033.57nucleotide exchange factor GrpE [Pontibacter actin... [more]
gi|737345677|ref|WP_035327963.1|1.973e-1030.33nucleotide exchange factor GrpE [Dokdonia donghaen... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2116rna2116Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications