rna2113, rna2113 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2113
Unique Name	rna2113
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1893
Alignment location	CM002458.1:916130..918664 -

Link to JBrowse

Properties


Property Name	Value
Product	Leucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript id	gnl\|cribi\|Naga_100009g46.578.mrna
Orig protein id	gnl\|cribi\|Naga_100009g46.578
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:916130..918664 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g46	gene2020	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28535.1	cds2105	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2113	rna2113-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:916130..918664-
coding sequence from alignment at CM002458.1:916130..918664-

mRNA sequence

>rna2113 ID=rna2113|Name=rna2113|organism=Nannochloropsis gaditana|type=mRNA|length=1893bp
ATAGTAATGACGGTATCCACCAACCCTGTGCTTCTCGTTTGCGGAGCAAG
TATTGACGGTCGATCAAACGAGTTACCCCTATTTTCCGAAGCTCCCGGAG
CCCCCCGAAAAAAACAAAACTTGGCTTGCCATACAAGAATATGTGTAGCC
GCGTAGAGCCTTCTGTGGTGTCTGCTTATTGCCGATTGACGACTTCTTTC
CTCAGTCTGACGCTCGTGAAATTACCTATATATCAGACGGGCACTTACGA
CAAGTATGACGATTAAGCGAAAGGGGCTTTTGTCACCAAGATGTCCCGAT
GTTCATGCTGCTGTTGTAGCGACAGACTGCTGTCATGCTAACACGGCGAC
TTCAGTGAAGCATGGTGGAGAGAAGCCTCCAGTAGTGTCCACGAGTGGTG
ACTTGCCAAAGTATGAGCCACGCGTTGCAGATGACGGAGTCCTCCACGGT
GCTTGTCAAACAGAGATTAAGGCTCTGCGGGCGGAGGTTGAACTACTACG
CAAGAAGCTTGACGCTGCATTAGGTGACATACCAGCATGCTCTATTTGCC
TGGAATGCGTTGACTATCCTGTAGAGCTGCAGGAGTGTCGGCACCTCTTC
TGCTGTCAGTGCTTCTACATGTATGCCAAATGGAAAACTACTGGGAACAT
AGCATGTCCTGCGTGTCGTACAACAGTATGTAAGGCACCGCTACCACCGC
CTCTCGCCTTCATACAACATTTAGACGCGATAAAGGTTGCGAAGCGGCGA
CAACAAGAGGCGGTAAGGACGGGCGCAGACCCAGGACAAAGTCTCGAGGG
AGGTATATATAGAATTGACGCAAAAGCAGAAAGTCAGAGAAGAAGCGAAG
AAGAAAGTGAACGCAAAGTAGGAGAGAAAATCAAATTGGAAAGATGGAAG
GAAGGGGTAAGCATGATGAAGTCACATGATGAGGAGATAGGAGAGGATGA
CGACCGCTCTGCTGCAGGTCTATTGGATCGTGCTGGCCCGTCGGGGCAGG
CGCAGGAGGATAGGGATATGGAGGCAAAGAAGACTGCAGCTGCTACCGCC
ATTGCTGCTCGCCGTGCCCGTGCGGCGTACCAAGGCCAGATGGTCGAGTT
GAAAGTCATGTTCGAGGCTGCAGAGCGCATGGGCGAGGGGGCTGTCGGGC
TGAATTCCTCCAGAAGAATACGGCCGCGTACAATAAGAAATGCAGAGATG
GATGGAAGCACTCATCTCAACTACGATGAGTCTGACGGTGTGTACCGCTG
CCTGAACTGCCATTGGGAGGTGGATGAAGGGGGCCTGTGCGCCCGATGCC
TCCACGACGACGACGATGAAGAGGAGGATGTAGATGTAGCACATGTGTCG
AGGACGGATTTCTACCCACCGGGTCAGTTTGATTACGATAGCGATGAAGA
TGGGACTTTGGATCGATGACCACGAATTCAGTGATGGCGATGGAGTGACG
AGGGGATTGCCATTGAGATGAGCGTCAAACCGAGATTGCTTCTATTGGCT
TTTGTTTTGATCCCTACCACGCCGCCTAGTAAGTGGAGAAGGATGGATAA
AATGTATGAAAGGAAGAGGGAGCCGGGTAGGACTAAAAGGAGGAAACAAG
AGGGAGCGGGAAAATGGAAGAAATGGAGAGCGGTGAGGCAACTGTCGCAC
TGGTTCGTGATGCGTTTGAAACTGAGCGTGACAGAAGATAAACGAGCGTT
GTATCCCGCAGCGAGTCATGTGAAAGCGACCTAGAGACGAGGTCTGCTAG
CCATGAAGGAGCGGGCGAAAGAGAAGGAACGGTGCTGAGACGCATGAAAT
GGGGCACATCATACGGTTATGTATCTCTTTTCGTGAGCAGAGCACGGGAA
TAGCAATCATATGTGACATCAATGTAAATATAAACTTCAGTGT

protein sequence of rna2113

>rna2113-protein ID=rna2113-protein|Name=rna2113|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MRLSHNKRVCISSLSQDLCVHIVAFLRPHDVNKLGQASKIFYSKKLCDFI
AYIDGKLRFPDRLVNKLHLLKRLEVLNLKGNKLSNEGSWALSKFLALPSS
ASSLQRLDLSGLFLTPSGITLLAKSLATTTDESYRSTNGGHRRDKRHKCS
GSPLQAEFSQSFLSIDTSASYSENCVGITPGMTTSLSSAYFSKNLEPQKP
LLLRELTLAMNTIGDSGSDALCNLLESGDCQLLQSLDLRNTGIGLRGVLH
LARGLARCPLLTMLSLSNNPLDVLYDNQVQSCSPDSVLHGTEEVGTGTNS
VLSAPIDFSRKAWSALGRALPLSLRHLNLFNTTLNSMVMHRLVLNW

mRNA from alignment at CM002458.1:916130..918664-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2113 ID=rna2113|Name=rna2113|organism=Nannochloropsis gaditana|type=mRNA|length=2535bp|location=Sequence derived from alignment at CM002458.1:916130..918664- (Nannochloropsis gaditana)
ATTATCGTGCAAATAATCTTCTTAATAAGGTCGAGTGCTCATACATCGCG
CATCCCTACACCGCGGTAGTAATTTGCAACGGTGGATGCCATCCCCTCGA
TCAAGCCGTAGCAGTCCAAATCCAACATTCCAGAGCTCCATATCACTTGG
AAGCATCAAAAAGAGTACATCGCGCGTAGACCTTTCATTCCAATGCGCTT
ATCACACAATAAAAGAGTTTGCATTAGTTCCCTAAGTCAGGACCTTTGTG
TCCATATAGTAGCTTTCTTGCGTCCTCACGACGTAAACAAGCTTGGACAG
GCTTCAAAGATTTTTTATTCCAAAAAATTATGCGATTTCATAGCCTACAT
TGACGGGAAATTGCGTTTTCCGGATAGGCTTGTCAATAAATTACACTTAC
TGAAACGCCTAGAGGTATTAAATTTAAAAGGGAACAAGTTGAGCAACGAG
GGCAGCTGGGCTTTGTCAAAATTCTTGGCACTACCCTCCAGTGCCTCAAG
CCTTCAGCGACTTGATCTTTCAGGACTCTTTCTGACACCTTCGGGCATCA
CTTTATTGGCAAAGAGTCTCGCCACTACTACTGACGAGAGCTATAGATCC
ACAAACGGGGGACACAGGCGTGACAAGCGCCACAAATGCTCGGGATCACC
CCTGCAAGCAGAGTTTTCGCAGAGCTTTTTAAGCATTGATACATCAGCCA
GCTATAGTGAAAATTGTGTGGGTATCACTCCTGGAATGACTACGTCGCTA
TCCTCTGCATACTTCTCCAAAAACCTTGAGCCACAGAAGCCACTATTGCT
TCGAGAGTTAACATTAGCTATGAATACCATTGGCGATAGCGGTAGTGATG
CCCTATGCAATCTCTTAGAAAGTGGAGATTGCCAACTGCTTCAGTCTCTA
GACCTTCGAAATACGGGTATCGGCCTGCGAGGTGTTCTCCACTTAGCGCG
AGGATTGGCTCGTTGTCCGCTCCTTACCATGTTGAGCCTATCTAACAATC
CGTTGGATGTATTATACGACAATCAAGTGCAAAGTTGCTCCCCGGATTCG
GTCTTACATGGCACAGAAGAAGTCGGCACGGGAACAAATAGCGTATTATC
AGCTCCTATTGACTTCTCTCGTAAAGCATGGAGCGCTTTGGGACGGGCTT
TGCCTTTGTCACTGCGACACCTCAATCTCTTCAACACCACACTAAATAGC
ATGGTAATGCATCGATTAGTTTTGAACTGGTAAATTCCGTCCTTGGTGCA
TCTCAATGTAAGCCACAACTCCATCGGGTCGGAGGGAGCGCGCCTACTTT
TTCGCAGCCTTGTGAACATGTCCTGTGCAAGAATTGAGCATCTAAATATT
TCGCATAACAACATCCGTCAAGATGCATTGATCGCTATATCGAAATTTGC
CTCTACTAAGTCAGTGAATCAGAAATTGCGGCATCTCGATCTCAGCTACA
ATCCATTTGGCGTCGAGGTCTTAGCAAGTGCGAGTTACGCCCAAAGCGCA
CATGCTGAAGAGCATCACCCGCTATGTGCCTTTTCCATGGCCCTGGCTAG
CTGCCCTTCTTTAGAGCATCTCGACCTTCGGAAAGTAGACTTAGATGAGA
ACTTTGCCAGCTTTGCGGAGGGCCTGAAGAAAGCCCTGATACTGGACTCG
GCGGGCTCCTGCACGTGGAGACACTTGGACATATCGTGGAACAGGATTGG
CGAGAATGGTGCCCGTTCAATCGCTGGGCTCTTCCAGCCATCTTTTGAGA
AGAGAGATGAGCAGCAGGTCATTTTTTCGCGATTGAACTTGCTCAATTTA
CTGCGCACTGGCATTGGAAGACAAGGGGCCAAAATGTTGGCCGATGTGTG
GAACTGGTGGGACGCTGATGAAGAGAGGCAAAAAAAAAGGGACGCATCAC
CCCGCTTGCTGGTCGCTATCGACATCGAAAACGCACCTGACGCGTCCGGT
GCCTTGTATGTGGAGGCGTCTCGACTCTGGCATATCTTGCAGCGGCACTA
GGAGCCATCTTCCAAAGGGATCCCAAGCCGCCCTATGGTTCCTGCGGCGA
GTCCTCATGCCTTGCTGTAGTAGTGCTGAGCCATGTCAAATTTCATTGGG
CTGCCTCGATCCGTTCTACTTTCATGGCACGTCTGACTGGACTGTTTTGC
CTTCAATTTGCGGGGCCTACGTGTGGTATCTGAGGCATGAAGTTTGATTT
ATCATTCCCGGCAGGCGCGAGGGCACTTGATAGCGGAAACAAAAAGTATG
ACTTTGCCAGGCACACATTTCATAGCTTGTCTTTGGAAGGGGCGATCTGA
AAGGGACTGGCTCAGTTCAGGCTGACACGTATGGATCATGAGAACAATCC
TCGAGAATACACACGCACACCCTTTGTGAAATAAATCTGGGACTCGAACG
GAAAACCGGCTTGGATTTCGAGCAGAAAAAAAAAAAAATAGATCTGCAGG
AAGATACACTGAAGTTTATATTTACATTGATGTCACATATGATTGCTATT
CCCGTGCTCTGCTCACGAAAAGAGATACATAACCG

Coding sequence (CDS) from alignment at CM002458.1:916130..918664-

>rna2113 ID=rna2113|Name=rna2113|organism=Nannochloropsis gaditana|type=CDS|length=1041bp|location=Sequence derived from alignment at CM002458.1:916130..918664- (Nannochloropsis gaditana)
ATGCGCTTATCACACAATAAAAGAGTTTGCATTAGTTCCCTAAGTCAGGA
CCTTTGTGTCCATATAGTAGCTTTCTTGCGTCCTCACGACGTAAACAAGC
TTGGACAGGCTTCAAAGATTTTTTATTCCAAAAAATTATGCGATTTCATA
GCCTACATTGACGGGAAATTGCGTTTTCCGGATAGGCTTGTCAATAAATT
ACACTTACTGAAACGCCTAGAGGTATTAAATTTAAAAGGGAACAAGTTGA
GCAACGAGGGCAGCTGGGCTTTGTCAAAATTCTTGGCACTACCCTCCAGT
GCCTCAAGCCTTCAGCGACTTGATCTTTCAGGACTCTTTCTGACACCTTC
GGGCATCACTTTATTGGCAAAGAGTCTCGCCACTACTACTGACGAGAGCT
ATAGATCCACAAACGGGGGACACAGGCGTGACAAGCGCCACAAATGCTCG
GGATCACCCCTGCAAGCAGAGTTTTCGCAGAGCTTTTTAAGCATTGATAC
ATCAGCCAGCTATAGTGAAAATTGTGTGGGTATCACTCCTGGAATGACTA
CGTCGCTATCCTCTGCATACTTCTCCAAAAACCTTGAGCCACAGAAGCCA
CTATTGCTTCGAGAGTTAACATTAGCTATGAATACCATTGGCGATAGCGG
TAGTGATGCCCTATGCAATCTCTTAGAAAGTGGAGATTGCCAACTGCTTC
AGTCTCTAGACCTTCGAAATACGGGTATCGGCCTGCGAGGTGTTCTCCAC
TTAGCGCGAGGATTGGCTCGTTGTCCGCTCCTTACCATGTTGAGCCTATC
TAACAATCCGTTGGATGTATTATACGACAATCAAGTGCAAAGTTGCTCCC
CGGATTCGGTCTTACATGGCACAGAAGAAGTCGGCACGGGAACAAATAGC
GTATTATCAGCTCCTATTGACTTCTCTCGTAAAGCATGGAGCGCTTTGGG
ACGGGCTTTGCCTTTGTCACTGCGACACCTCAATCTCTTCAACACCACAC
TAAATAGCATGGTAATGCATCGATTAGTTTTGAACTGGTAA

Synonyms

Publications