rna2112, rna2112 (mRNA) Nannochloropsis gaditana

Overview
Namerna2112
Unique Namerna2112
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1266
Alignment locationCM002458.1:914317..916209 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g48.665.mrna
Orig protein idgnl|cribi|Naga_100009g48.665
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:914317..916209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g48gene2019Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2112rna2112-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28622.1cds2104Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2112 ID=rna2112|Name=rna2112|organism=Nannochloropsis gaditana|type=mRNA|length=1266bp
CTCTCGTCGATTCTTCCTAGTCGCCTTCCTATATCACTTATACCATATAC
CACGCGAGTCCTCTCATGATTCTTGACCGTTGATTATGCTCTCACGATAC
TGGTCAACAGTTTCCCATGATCATCCAGGCCGGCGCCGTCAAGGTCTTAG
CCAAAGATGTGGTTTCTATTGCTAAGACGGCTGGAGATGCCATCATGTCT
ATATACGCCTTCCCGGACACTGTTAGCTGGGACGTTAAGGCAAAGTCCGA
CAACTCTCCCCTGACCGCTGCTGATCTTGCTGCCAACAACCTGATTTGTG
CCTCGCTCAAGGAAAAGTATCCTTCGATTCCCATCGTTTCCGAGGAAAAC
AAAATGCTTCCGTATGAAGAACGAAGCAATTGGCCTTTCTACTGGTGCGT
TGACCCCCTGGACGGAACGAAGGAGTTTCTAAAGCGGAACGGCCAATTCA
CGGTAAACATTGGGTTATGCCAGGGGAAGTCTCCCATATTTGGGGTGGTA
CACGTGCCAGCTATGGAACCGGCTAAGACGTACTATGGCGCGAAAGGCCA
CGGCGCCTTTGTGGAGATCGCGGATGAGCCACCAATTCCCATCAAGGTGA
AAGAATTCAGTGAAAAGGATCCAAACTTGGCCATCGTTGCCTCTGCTTCA
CACAATACCCCCGAAACGGAGAATTTTATAAGCAAGTACCAGAACCCGAC
TCTTAAGGCGCTAGGATCTTCTTTAAAGCTTTTGATGGTAGCCGAGGGAG
AGGCGCACGTCTACCCCCGGTTGGCACCAACCTGTGAATGGGACACCTGC
GCCTCACACGCGGTGGTGGAGGCGGCAGGAGGAGAGGTTCTGCAAGCGGA
AGGAGGCAAGGCATGCCAGCCCGGACTGCCCGTGGAGTATAACAAGCCGG
ACGCGTTGAATCCGTTTTTCATTGTGTACGGCAGACGCCGTGACTGAAAA
GAGTTCCGCATAGATGTGTCCACGGTACAAGTGCGATAGCAGAGTGAGCT
AGAAAGGAAAATTTGCAAGCTGGGCTTGACATGTTGGTGAGCTGTAGGGT
GCTGGAATAGGAAAAGGTCACGGTGATACATGTTTTATGTGATGGCAACC
GCGCAGCTTCTGGAATATTCGGGTGAGTGGAAGGAGTGAGACTAACTCTG
CGTCACCATCAGAAGGAGGAACGAAAGTACTCGTATTGCCAGCCTTATGC
CTCAAGAAACTAAACAATAGGCGATTACCAAAAGGGTCTACAACGACTCG
AATAATGCGGCACTTT
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protein sequence of rna2112

>rna2112-protein ID=rna2112-protein|Name=rna2112|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MTIKRKGLLSPRCPDVHAAVVATDCCHANTATSVKHGGEKPPVVSTSGDL
PKYEPRVADDGVLHGACQTEIKALRAEVELLRKKLDAALGDIPACSICLE
CVDYPVELQECRHLFCCQCFYMYAKWKTTGNIACPACRTTVCKAPLPPPL
AFIQHLDAIKVAKRRQQEAVRTGADPGQSLEGGIYRIDAKAESQRRSEEE
SERKVGEKIKLERWKEGVSMMKSHDEEIGEDDDRSAAGLLDRAGPSGQAQ
EDRDMEAKKTAAATAIAARRARAAYQGQMVELKVMFEAAERMGEGAVGLN
SSRRIRPRTIRNAEMDGSTHLNYDESDGVYRCLNCHWEVDEGGLCARCLH
DDDDEEEDVDVAHVSRTDFYPPGQFDYDSDEDGTLDR
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mRNA from alignment at CM002458.1:914317..916209+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2112 ID=rna2112|Name=rna2112|organism=Nannochloropsis gaditana|type=mRNA|length=1893bp|location=Sequence derived from alignment at CM002458.1:914317..916209+ (Nannochloropsis gaditana)
ATAGTAATGACGGTATCCACCAACCCTGTGCTTCTCGTTTGCGGAGCAAG
TATTGACGGTCGATCAAACGAGTTACCCCTATTTTCCGAAGCTCCCGGAG
CCCCCCGAAAAAAACAAAACTTGGCTTGCCATACAAGAATATGTGTAGCC
GCGTAGAGCCTTCTGTGGTGTCTGCTTATTGCCGATTGACGACTTCTTTC
CTCAGTCTGACGCTCGTGAAATTACCTATATATCAGACGGGCACTTACGA
CAAGTATGACGATTAAGCGAAAGGGGCTTTTGTCACCAAGATGTCCCGAT
GTTCATGCTGCTGTTGTAGCGACAGACTGCTGTCATGCTAACACGGCGAC
TTCAGTGAAGCATGGTGGAGAGAAGCCTCCAGTAGTGTCCACGAGTGGTG
ACTTGCCAAAGTATGAGCCACGCGTTGCAGATGACGGAGTCCTCCACGGT
GCTTGTCAAACAGAGATTAAGGCTCTGCGGGCGGAGGTTGAACTACTACG
CAAGAAGCTTGACGCTGCATTAGGTGACATACCAGCATGCTCTATTTGCC
TGGAATGCGTTGACTATCCTGTAGAGCTGCAGGAGTGTCGGCACCTCTTC
TGCTGTCAGTGCTTCTACATGTATGCCAAATGGAAAACTACTGGGAACAT
AGCATGTCCTGCGTGTCGTACAACAGTATGTAAGGCACCGCTACCACCGC
CTCTCGCCTTCATACAACATTTAGACGCGATAAAGGTTGCGAAGCGGCGA
CAACAAGAGGCGGTAAGGACGGGCGCAGACCCAGGACAAAGTCTCGAGGG
AGGTATATATAGAATTGACGCAAAAGCAGAAAGTCAGAGAAGAagcgaag
aagaaagtgaACGCAAAGTAGGAGAGAAAATCAAATTGGaaagatggaag
gaaggggtaagCATGATGAAGTCACATGATGAGGAGAtaggagaggatga
cgaccGCTCTGCTGCAGGTCTATTGGATCGTGCTGGCCCGTCGGggcagg
cgcaggaggatAGGGAtatggaggcaaagaagactGCAGCTGCTACCGCC
ATTGCTGCTCGCCGTGCCCGTGCGGCGTACCAAGGCCAGATGGTCGAGTT
GAAAGTCATGTTCGAGGCTGCAGAGCGCATGGGCGAGGGGGCTGTCGGGC
TGAATTCCTCCAGAAGAATACGGCCGCGTACAATAAGAAATGCAGAGATG
GATGGAAGCACTCATCTCAACTACGATGAGTCTGACGGTGTGTACCGCTG
CCTGAACTGCCATTGGGAGGTGGATGAAGGGGGCCTGTGCGCCCGATGCC
tccacgacgacgacgatgaagaggaggatgtagATGTAGCACATGTGTCG
AGGACGGATTTCTACCCACCGGGTCAGTTTGATTACGATAGCGATGAAGA
TGGGACTTTGGATCGATGACCACGAATTCAGTGATGGCGATGGAGTGACG
AGGGGATTGCCATTGAGATGAGCGTCAAACCGAGATTGCTTCTATTGGCT
TTTGTTTTGATCCCTACCACGCCGCCTAGTAAGTGGAGAAGGATGGATAA
AATGTatgaaaggaagagggagccggGTAGGACtaaaaggaggaaacaag
agggagcgggaaaatggaagaaatggagagcGGTGAGGCAACTGTCGCAC
TGGTTCGTGATGCGTTTGAAACTGAGCGTGACAGAAGATAAACGAGCGTT
GTATCCCGCAGCGAGTCATGTGAAAGCGACCTAGAGACGAGGTCTGCTAG
CCATGAAGGAGCgggcgaaagagaaggaacggTGCTGAGACGCATGAAAT
GGGGCACATCATACGGTTATGTATCTCTTTTCGTGAGCAGAGCACGGGAA
TAGCAATCATATGTGACATCAATGTAAATATAAACTTCAGTGT
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Coding sequence (CDS) from alignment at CM002458.1:914317..916209+

>rna2112 ID=rna2112|Name=rna2112|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002458.1:914317..916209+ (Nannochloropsis gaditana)
ATGACGATTAAGCGAAAGGGGCTTTTGTCACCAAGATGTCCCGATGTTCA
TGCTGCTGTTGTAGCGACAGACTGCTGTCATGCTAACACGGCGACTTCAG
TGAAGCATGGTGGAGAGAAGCCTCCAGTAGTGTCCACGAGTGGTGACTTG
CCAAAGTATGAGCCACGCGTTGCAGATGACGGAGTCCTCCACGGTGCTTG
TCAAACAGAGATTAAGGCTCTGCGGGCGGAGGTTGAACTACTACGCAAGA
AGCTTGACGCTGCATTAGGTGACATACCAGCATGCTCTATTTGCCTGGAA
TGCGTTGACTATCCTGTAGAGCTGCAGGAGTGTCGGCACCTCTTCTGCTG
TCAGTGCTTCTACATGTATGCCAAATGGAAAACTACTGGGAACATAGCAT
GTCCTGCGTGTCGTACAACAGTATGTAAGGCACCGCTACCACCGCCTCTC
GCCTTCATACAACATTTAGACGCGATAAAGGTTGCGAAGCGGCGACAACA
AGAGGCGGTAAGGACGGGCGCAGACCCAGGACAAAGTCTCGAGGGAGGTA
TATATAGAATTGACGCAAAAGCAGAAAGTCAGAGAAGAagcgaagaagaa
agtgaACGCAAAGTAGGAGAGAAAATCAAATTGGaaagatggaaggaagg
ggtaagCATGATGAAGTCACATGATGAGGAGAtaggagaggatgacgacc
GCTCTGCTGCAGGTCTATTGGATCGTGCTGGCCCGTCGGggcaggcgcag
gaggatAGGGAtatggaggcaaagaagactGCAGCTGCTACCGCCATTGC
TGCTCGCCGTGCCCGTGCGGCGTACCAAGGCCAGATGGTCGAGTTGAAAG
TCATGTTCGAGGCTGCAGAGCGCATGGGCGAGGGGGCTGTCGGGCTGAAT
TCCTCCAGAAGAATACGGCCGCGTACAATAAGAAATGCAGAGATGGATGG
AAGCACTCATCTCAACTACGATGAGTCTGACGGTGTGTACCGCTGCCTGA
ACTGCCATTGGGAGGTGGATGAAGGGGGCCTGTGCGCCCGATGCCtccac
gacgacgacgatgaagaggaggatgtagATGTAGCACATGTGTCGAGGAC
GGATTTCTACCCACCGGGTCAGTTTGATTACGATAGCGATGAAGATGGGA
CTTTGGATCGATGA
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Synonyms
Publications