EWM28622.1, cds2104 (CDS) Nannochloropsis gaditana

Overview
NameEWM28622.1
Unique Namecds2104
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:914572..915735 +

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Properties
Property NameValue
Protein idEWM28622.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g48.665.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:914572..915735 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001841Znf_RING
Homology
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BLAST of EWM28622.1 vs. NCBI_GenBank
Match: gi|585111040|gb|EWM28622.1| (hypothetical protein Naga_100009g48 [Nannochloropsis gaditana])

HSP 1 Score: 796.964 bits (2057), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0 
Query:    1 MTIKRKGLLSPRCPDVHAAVVATDCCHANTATSVKHGGEKPPVVSTSGDLPKYEPRVADDGVLHGACQTEIKALRAEVELLRKKLDAALGDIPACSICLECVDYPVELQECRHLFCCQCFYMYAKWKTTGNIACPACRTTVCKAPLPPPLAFIQHLDAIKVAKRRQQEAVRTGADPGQSLEGGIYRIDAKAESQRRSEEESERKVGEKIKLERWKEGVSMMKSHDEEIGEDDDRSAAGLLDRAGPSGQAQEDRDMEAKKTAAATAIAARRARAAYQGQMVELKVMFEAAERMGEGAVGLNSSRRIRPRTIRNAEMDGSTHLNYDESDGVYRCLNCHWEVDEGGLCARCLHDDDDEEEDVDVAHVSRTDFYPPGQFDYDSDEDGTLDR 387
            MTIKRKGLLSPRCPDVHAAVVATDCCHANTATSVKHGGEKPPVVSTSGDLPKYEPRVADDGVLHGACQTEIKALRAEVELLRKKLDAALGDIPACSICLECVDYPVELQECRHLFCCQCFYMYAKWKTTGNIACPACRTTVCKAPLPPPLAFIQHLDAIKVAKRRQQEAVRTGADPGQSLEGGIYRIDAKAESQRRSEEESERKVGEKIKLERWKEGVSMMKSHDEEIGEDDDRSAAGLLDRAGPSGQAQEDRDMEAKKTAAATAIAARRARAAYQGQMVELKVMFEAAERMGEGAVGLNSSRRIRPRTIRNAEMDGSTHLNYDESDGVYRCLNCHWEVDEGGLCARCLHDDDDEEEDVDVAHVSRTDFYPPGQFDYDSDEDGTLDR
Sbjct:    1 MTIKRKGLLSPRCPDVHAAVVATDCCHANTATSVKHGGEKPPVVSTSGDLPKYEPRVADDGVLHGACQTEIKALRAEVELLRKKLDAALGDIPACSICLECVDYPVELQECRHLFCCQCFYMYAKWKTTGNIACPACRTTVCKAPLPPPLAFIQHLDAIKVAKRRQQEAVRTGADPGQSLEGGIYRIDAKAESQRRSEEESERKVGEKIKLERWKEGVSMMKSHDEEIGEDDDRSAAGLLDRAGPSGQAQEDRDMEAKKTAAATAIAARRARAAYQGQMVELKVMFEAAERMGEGAVGLNSSRRIRPRTIRNAEMDGSTHLNYDESDGVYRCLNCHWEVDEGGLCARCLHDDDDEEEDVDVAHVSRTDFYPPGQFDYDSDEDGTLDR 387
The following BLAST results are available for this feature:
BLAST of EWM28622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111040|gb|EWM28622.1|0.000e+0100.00hypothetical protein Naga_100009g48 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2112rna2112Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications