rna211, rna211 (mRNA) Nannochloropsis gaditana

Overview
Namerna211
Unique Namerna211
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1791
Alignment locationCM002455.1:539118..540760 +

Link to JBrowse

Properties
Property NameValue
Productnuclear migration protein nudC putative
Orig transcript idgnl|cribi|Naga_100013g4.9807.mrna
Orig protein idgnl|cribi|Naga_100013g4.9807
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:539118..540760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g4gene202Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna211rna211-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30519.1cds211Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna211 ID=rna211|Name=rna211|organism=Nannochloropsis gaditana|type=mRNA|length=1791bp
TGTTTAAAAGTAATGGATCAAAACGGCCATCTTCCGTCCCCATAGTTTTC
TTTTCCACGTATGTGTGTCTGTGCATGGGTGGAATGTACGCGACCGAGAA
GTGAAAGACTTGAGATGAGGAAGCAAAAAAGGTGTATCCCGAGCCTCGCC
ATTTGTTCCATGCACGCGATGCAGTGAGGGGTGGCTCAACACACTTTCAC
TCCATTTCTTGCAGCTGCCGCCCACAAAAAGCGCACTATCTGATACTTCA
CGTCTTGCCTTCTCGACCTAGAATTGACGTTCCGCACGAAATCAATAGAA
ATGACTCTGTGCAAGACTTTTAAAGGGGGTGAAATATGGCTGCTGTTGCC
CTCTCGATCTACAAGAAACACAACAATCTGAACAGAGTATGATTCTGCCC
TCTAACTAGCAGATGCATGTATCATCTCTGCACGAGTGCACCAGCACTAA
CTTATCGATGTGCATCCATCCCTGATTTTCTTGTTATTGACCTTGCACAG
GAGAGATCATGGCGACCGAGAGCGGGGGCCTAGTGAAGAGGACTCCGCAA
CAGGTCCAGGCGGCTAACCTCTTGATTCTTCAAAGAAGCGACGATGCCGT
GTCCGAGATACTTGCAACAGCGACACATGTTGTCATTTATGTCTTTGCAC
CCGCGACCAAGCAGTGGGAGCGTAAAGAGGCCACACACACCTCGATTAAG
TGAATGTAAATCTACACATGCATGATTGTCGTGTTGAGTTCTTCATCAAA
TATCGGAGATAGAGCGCGGTTGCGGCTATGATAGCGAAATTGACGCCGCG
CACATCAACGTATGACTTATGTGGTGCATTGAACAATTTCTAGATCGAAG
GCTCACTTTTCGTAGTGAAGCGCAATTACGGAGTACGTTTTCGATTGGTG
GTGCTTAATCGCGTTAAACGCGGGGATCTTGAAGAAGACTTGGACTCGAG
TTTCACCTTCGAGGACATGAGTCCCTACCTCCTCTACCGCAGACACACGG
ACTCAGACAAAGACGCGGAGACCCTGGCCATCTGGTTTCACAGTGAGAAG
GACAGAGTGCACATTGCGGGATGCTTGCAGAAAGTTCTTCGCTTGCATTC
TTCCGTCGATCCGAAACAGCAAGATCAGTGGCAGGCACAGGAGCGAGAAA
GCTTACTTGGATCCGCCTTGCCGCCGGCCCCAACCCTCACTGATCTGTCG
CGCGTGGATAATACGGAAGCAATGAAGAGCAGGACGACCAGTACGAGCGC
CGAGACAACCAAGGAAAAAAAGCCCACAGCAATCGAGGACTTGCTGCTAA
AAGCCGCTAGCCTGGGTGGTGGAAGCGCCATCACGCGCCCCGAGCTCGAC
AGGAAAGCAGACACTCTAACGACCAGCCCCGCCAGGCGTGCTGCGGCAGC
CTCACCGCCGGCTATTACGAACATGCTTTTGAGACCGAAGGTGGCAACGG
CCCATGCCGCGCCCGCTGCAGAGACTGGACGTCCCACGTGTACCAATGGG
TCAGGTCGTGGTCCAGGGCAGGGTTCTATTGTTTCGACCTTACTGAACCC
GCTAGGAATGGTGAGGCCGATCAGTAATTCCACATGCAGTGATAGCGGTA
ATGGAGGGACCATATCACCAGCAAGGAGTCTCGATAAGCAGCAGTTAAAG
GAAGCTTTGTTGGCACTACTTGAAGAGGATGCTTTTCTTGAGACCCTGCA
TCGAGCTTACTTGAGACGACGGACTGAATAGATTGCTAGCCTCACAAACT
TAACAGAAAAAAACGTAAGATATGTATAATGTAATACACGC
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protein sequence of rna211

>rna211-protein ID=rna211-protein|Name=rna211|organism=Nannochloropsis gaditana|type=polypeptide|length=336bp
MHRHTYVEKKTMGTEDGRFDPLLLNIAQQCQGIDGLLEVFLSFLRRKTDF
YTGATASKVEETILAAVRKQMGMAERTQQEELRTREAEEARREERMRMAK
LKGKANQKAKDSNAVTMDAATSSHTSQTNVVELGADGSFDVASTAATKEP
KEEKPKLDADGEEEKEEAPPGNGGATDRYIWTQQLAEVTINVPVPVGTRS
RDLSVDIGKKRLRVALKGGPTLVEGELYKPIKVDDSFWTLEDGREVVISL
QKENGMEWWKCAIAGDPEIDTSKVSPENSKLSDLDAETRQTVEKMMFDQR
QKQMGLPTSDEQKKREMLEKFMKQHPEMDFSGATIK
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mRNA from alignment at CM002455.1:539118..540760+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna211 ID=rna211|Name=rna211|organism=Nannochloropsis gaditana|type=mRNA|length=1643bp|location=Sequence derived from alignment at CM002455.1:539118..540760+ (Nannochloropsis gaditana)
CGGAGTCCTCTTCACTAGGCCCCCGCTCTCGGTCGCCATGATCTCTCCTG
TGCAAGGTCAATAACAAGAAAATCAGGGATGGATGCACATCGATAAGTTA
GTGCTGGTGCACTCGTGCAGAGATGATACATGCATCTGCTAGTTAGAGGG
CAGAATCATACTCTGTTCAGATTGTTGTGTTTCTTGTAGATCGAGAGGGC
AACAGCAGCCATATTTCACCCCCTTTAAAAGTCTTGCACAGAGTCATTTC
TATTGATTTCGTGCGGAACGTCAATTCTAGGTCGAGAAGGCAAGACGTGA
AGTATCAGATAGTGCGCTTTTTGTGGGCGGCAGCTGCAAGAAATGGAGTG
AAAGTGTGTTGAGCCACCCCTCACTGCATCGCGTGCATGGAACAAATGGC
GAGGCTCGGGATACACCTTTTTTGCTTCCTCATCTCAAGTCTTTCACTTC
TCGGTCGCGTACATTCCACCCATGCACAGACACACATacgtggaaaagaa
aacTATGGGGACGGAAGATGGCCGTTTTGATCCATTACTTTTAAACATTG
CGCAGCAGTGCCAAGGCATCGATGGCCTTCTAGAGGTCTTCCTGTCCTTT
TTGCGTCGCAAGACAGATTTCTACACGGGTGCCACGGCCAGTAAAGTTGA
AGAAACAATTTTAGCTGCCGTGCGAAAGCAAATGGGAATGGCAGAACGTA
CACAGCAGGAAGAACTTCGTACTCgtgaggcagaggaggcgcgaCGTGAG
GAACGAATGCGAATGGCGAAATTGAAAGGAAAGGCGAACCAGAAAGCAAA
AGATTCGAATGCAGTGACAATGGACGCAGCTACGTCGTCGCACACTTCAC
AAACGAACGTTGTTGAGCTAGGTGCTGATGGTAGTTTCGACGTCGCATCA
ACCGCGGCGACTAAGGaaccgaaggaggagaagcccaAACTTGACGcaga
tggcgaggaggaaaaggaagaagctcCTCCTGGGAACGGTGGTGCCACGG
ATCGGTACATTTGGACACAGCAACTGGCTGAAGTGACGATCAACGTTCCG
GTACCCGTGGGGACGCGCTCGCGCGACCTGAGCGTTGACATAGGGAAGAA
ACGATTGCGAGTCGCCCTCAAAGGGGGGCCAACGCTGGTCGAAGGAGAAC
TCTACAAGCCAATTAAGGTAGATGATTCATTTTGGACGCTAGAAGATGGG
CGTGAAGTGGTGATTAGCTTGCAAAAAGAGAACGGGATGGAGTGGTGGAA
ATGCGCGATCGCAGGCGACCCGGAAATTGATACGAGCAAGGTTTCGCCTG
AGAACTCGAAGCTGAGCGATTTAGATGCAGAGACGCGCCAGACAGTGGAA
AAAATGATGTTTGATCAGCGTCAGAAGCAGATGGGCCTGCCGACGTCAGA
TGAgcagaagaaaagggagatgCTCGAGAAGTTCATGAAGCAGCATCCTG
AAATGGATTTCAGCGGCGCGACCATTAAGTGAGAGAGGATGACAGTCAGA
AGTGCCTTTCATAGAGGCATGAACGAGTCAAGAGAAGAAGTCATCTGGGC
GTTCACATTTGCTTCgattctttttcttgatttGCAACGACCGTGATAGC
GTTCAAGTTCTCGGTTTACAATTCCCTGTCAGGGGCCTGACCT
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Coding sequence (CDS) from alignment at CM002455.1:539118..540760+

>rna211 ID=rna211|Name=rna211|organism=Nannochloropsis gaditana|type=CDS|length=1011bp|location=Sequence derived from alignment at CM002455.1:539118..540760+ (Nannochloropsis gaditana)
ATGCACAGACACACATacgtggaaaagaaaacTATGGGGACGGAAGATGG
CCGTTTTGATCCATTACTTTTAAACATTGCGCAGCAGTGCCAAGGCATCG
ATGGCCTTCTAGAGGTCTTCCTGTCCTTTTTGCGTCGCAAGACAGATTTC
TACACGGGTGCCACGGCCAGTAAAGTTGAAGAAACAATTTTAGCTGCCGT
GCGAAAGCAAATGGGAATGGCAGAACGTACACAGCAGGAAGAACTTCGTA
CTCgtgaggcagaggaggcgcgaCGTGAGGAACGAATGCGAATGGCGAAA
TTGAAAGGAAAGGCGAACCAGAAAGCAAAAGATTCGAATGCAGTGACAAT
GGACGCAGCTACGTCGTCGCACACTTCACAAACGAACGTTGTTGAGCTAG
GTGCTGATGGTAGTTTCGACGTCGCATCAACCGCGGCGACTAAGGaaccg
aaggaggagaagcccaAACTTGACGcagatggcgaggaggaaaaggaaga
agctcCTCCTGGGAACGGTGGTGCCACGGATCGGTACATTTGGACACAGC
AACTGGCTGAAGTGACGATCAACGTTCCGGTACCCGTGGGGACGCGCTCG
CGCGACCTGAGCGTTGACATAGGGAAGAAACGATTGCGAGTCGCCCTCAA
AGGGGGGCCAACGCTGGTCGAAGGAGAACTCTACAAGCCAATTAAGGTAG
ATGATTCATTTTGGACGCTAGAAGATGGGCGTGAAGTGGTGATTAGCTTG
CAAAAAGAGAACGGGATGGAGTGGTGGAAATGCGCGATCGCAGGCGACCC
GGAAATTGATACGAGCAAGGTTTCGCCTGAGAACTCGAAGCTGAGCGATT
TAGATGCAGAGACGCGCCAGACAGTGGAAAAAATGATGTTTGATCAGCGT
CAGAAGCAGATGGGCCTGCCGACGTCAGATGAgcagaagaaaagggagat
gCTCGAGAAGTTCATGAAGCAGCATCCTGAAATGGATTTCAGCGGCGCGA
CCATTAAGTGA
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Synonyms
Publications