rna2108, rna2108 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2108
Unique Name	rna2108
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1637
Alignment location	CM002458.1:904249..906851 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100009g52.580.mrna
Orig protein id	gnl\|cribi\|Naga_100009g52.580
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:904249..906851 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g52	gene2015	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2108	rna2108-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28537.1	cds2100	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:904249..906851+
coding sequence from alignment at CM002458.1:904249..906851+

mRNA sequence

>rna2108 ID=rna2108|Name=rna2108|organism=Nannochloropsis gaditana|type=mRNA|length=1637bp
ATCCCAAACAACACCATAAAGGGTGGAAGGAGGGCACGCGGTGCAGTCTT
GTCGGGCGCGGAGGCTGAGGGCGCAGGCGACCATTCCGAGTGCAAGGTGG
CCGGAATGTCATCGTCTTCTCGCACACCATCCCCCCATCCGCCACTGGGA
GAACCCAGACAACACAATGAATCAAAGGAAAAAGTAAAATCAACACTTTC
GCACGTGCGGTTGACTGCAGACGCAAAGAGCCATGTGCTCTCCCTCCCTG
CTTTGTCCACGGCACCATCTCCAGTAGGCGGCAAGGACATAGAGGGAGGA
CCTATGCATGGCACCACACCGGATGGGATGCTCCATTCGGTCGGGGGCTA
CGGCTGGTACGAGGAGGATAATGTAAGCCCAGCGAATAGTGGAGATGAGC
ACGGAGAAGAGGATGGTGGCGGCGGTGACATCAAGCATGTACGAGTCCTC
TCTCGGATGGAGACACTGCGGGTGGACGTGTTAGATGCCTCGATGCCCGG
CGGAACCGGTCACGGGGGGCTTCAAATTGATGAAGCTGGAGGCGTGACAG
ATGAATGTGAGCGTCTTCTCCCACGGGTGCCTATCTGTCGTCATGACAGC
GTGAACGAGGAGGGCAGCCTGGGCCGCAGTAAGAGCACTAGAATGGACGC
AGACACTACCACGATGAGCTACAGTCACGCAGCAGACGGCACCAGACGCC
AACACTGGCATCGGCAGCGAGAAGGTGAAATTCTGTTTCACCTGCCACAG
AGCAACTTCTCAGTGATGACGCGGCAATTTCTGGAGGAGGCTGCTGCCCT
CTCCGGCACCGTGGGTGGAGGACCCCCTGGCCGGGCGACGCACTGTTTTC
ACCACCGCCACCCCCGTGTTCTCCAGCTCCATAGTCACCGCTCACATTCA
AAGCGGCAGCCGGAAGTTGTGTACGCAGCCCTGGGCCTGGGGGGCTTTCG
CATCTGCCAAACCGGATGGGGCAGCCAGCATGCCGAGTACTTAGTCTGCC
TCTGCATTAATCAGCAGACATTCATTGCATGGCGGCGATACTCCGCCTTT
GCGAAGTTCTTCAGGGACATCCAGCGCTTATACCGGGATGCGGCTGACAT
GTTTCCAGTCACACGAGGCGCATGGAAAGCGCTGGAAAGGAGACGGAAGT
GGTGGCGATGTTTGAGTGTGGGTTACTTGGCGTTCAAGCTCGGCCTCCTT
GAGTCCTTTCTGGAGGCTGTCTTGGTCGAGGTCCCTGGACCTGACCTCTT
GATGGCATTCGCTTCGCCAAGTCCCTCGACAACAATTTGCGATGGGCTTT
GGTCTTGTCCGTGCGTGAGGGAGATGGACGATCAAGGCACCTGGGGGGCT
AATGGTATCACTCACATTTCTAGTAACGAGGAAATGTTGCTCTGTCAGAA
AGTGCAGGAAGCTGGACAGTTTCGAGGGATTGAATCTGGTTGTGACACAG
TCGCTAGGGAAGAAAAGTAATTTTTGAAACAGTAAGAGAGAGATGATGGT
TTGAAACCCACATCTTTGAACTGCTAGGGTCACGCAAGTGAAATCCACTT
GTGCTTGATTGTAATGAGGACATGTTACATGCACATTTTAAGACACGGCC
GGCTCTATACATGCAAATAATAATTGTAGGTCTTGAT

protein sequence of rna2108

>rna2108-protein ID=rna2108-protein|Name=rna2108|organism=Nannochloropsis gaditana|type=polypeptide|length=584bp
MSLTTACHSKLYDDREPTLGHGLHTHLHTHDISSRRTDLPPSSFENVAAK
KKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDK
SQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLR
EQFMQNPSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAA
SGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAM
QAIRTQLASATFGAKEYRPTSLAKDDGKGLMVLSAASAAEMAATRLLEEV
EEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEG
DDEEDDMEGGGGSGGGQVEERPQGAPQELATRGENSTGLAVDPDVADGGA
QGGNGSEEPPSTFVAQEQPAGYPEGQVACPVLRRCSHVLPHQAQACDGRS
PRATTGALGDGQVLKGEPVGVCGGGGGGVSEAGLCPSCYDAAAEERLLRT
LWASGGGRDMGERDGVSGGFGGVMSLEDQLAPEEEEEEGLDDALLQEMAK
LKTSLSGETDRREQLRSRLARNFKQWCLAADRDV

mRNA from alignment at CM002458.1:904249..906851+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2108 ID=rna2108|Name=rna2108|organism=Nannochloropsis gaditana|type=mRNA|length=2603bp|location=Sequence derived from alignment at CM002458.1:904249..906851+ (Nannochloropsis gaditana)
ATGTCTCTGACAACCGCATGCCACTCCAAGCTCTACGACGACAGGGAGCC
AACATTAGGGCACGGTCTCCACACCCACCTTCATACCCATGATATTTCAT
CCAGACGGACCGATttacccccttcctctttcgaaAATGTCGCagcaaaa
aagaaaaacgtGAACGCGAGAAAGAAATCACATGGACTCTTTTCCCAAAG
CACAGACTCAAAGATGATAACACCTGGCACAAAAGACGATAATGGAACCC
CCACTAATACTGGTTTAGCAGCTTCAGGACAGGCTATATTGGTGGATAAA
TCTCAACTCATTAACTTGTCCTCCCAGTACTCGACCTGCGCCGGCTGCCT
AGCTGCTGTTAAAATGCTTCTCTCAAGACCGCTGAGTGAGTTACGGCTTC
TCAATGCTGTCATGGCCGATGGTCCTTCCAGTacgaccctcctccttcgc
gagCAATTTATGCAGAACCCGTCCCGTCTGGCCCAGCTTTTGGagcgctt
tcctccaccgcccctcccgaaAAAGGTGTCGGCCCATGGAGCGCATGGCC
GATGCCCCCTGCATCGACGGATGGGGTCCGGGGCAGggtggggggcaggc
gggtggCAGCATCAGCACTACAGCCAGGGCCACGGAGACGGCGGGTGGGA
TCGTGAGGCGGCCTGGGCGCGCTTGCCAGGcgccgcgaaggagggggtgg
ggaaaatCGAGCTGGGGACGCTGCAAACAGCCATGCACGCAGCTACCGCC
AGTCATAGATTCTGTGCGGACTGCAAGCATAACGTGGTGATGGCACTGGA
CATCCTGACGGAGCGTGTCGGCGTCGGGGAGGTGAATGAGGGCGAAGACG
TGGACATGGAGCTCTACCGGCCTTTCATGGGCCGCGTCGTGGATCGAAGC
GCTGCCTATGGAGACGTACCGCctgagaaagaagggaggggggggataaG
GAGGGGGTCggtgaaggaaagaggaagggaagggaatggcgggggggagg
aggaggggggcggggaagaagaggaggagcgggagagcggggaagaggcg
gacgagggaggtgagaggaggaaagttgAACTGGAAGATATAGGATATGA
GAAGCAAAGAAAGAGTGCGTCAAACAGTGAGAGCGGTCAGGAGGACGCTG
GTGCGGTGGAAGCTGTCTCTgcggcagggggggggaccAGACCCGCGACG
CCcctgaaaggggaggacgacagagTCCTCTGGTGCGCAgtcgaggacgt
ggagaggcTCATTGCCTGGGcgcaggtagggagggatagaggcaggaggc
agggcccGGATTGCGCGACGGAATGGGTGGGTAGAAGACGGCGGCCGAGC
GATGTCGTCCTCGGTTGTCAGTCCTTGTCCTGATCCTGATCTGCCTTCTT
GgacccttcctctttgcacAGGACTTTGACTCGCAGGAATTCGCCGCCTC
GGGGCAGCGGCATGCGGCCACGCTCGAGCATGGACAGCGGGAAGTGCGTG
CCATTATCGGCTCggtccttctttcccagtTGCGGGCGGCTTGGCACCAG
CAAACGGCTCACGCTCAATCGGAGCACtacctcttcgccctcgccaTGCA
GGCGATCCGGACGCAGCTTGCCAGTGCCActtttggcgcgaaggaaTACA
GGCCGACGTCTTTGGCCAAGGATGATGGGAAAGGACTGATGGTGTTGTCA
GCTGCCTCCGCAGCGGAGATGGCGGCGACGCGgctgttggaggaggtgga
ggaagaggagggcgaggcagcCGCCAGGCGGAAGAATAAGAgtcggaaga
agaaggagcggaAGGCTAGGGCGAAGCTCCGCAAGGCCGCTGGGGGTGGG
AGCTGCAGTAGCAGCGTAGCCTGCGACTCGGGAGGGctcggagaggggga
tgacgaggaggacgacatggagggagggggcggatcTGGTGGGGGGCAGG
TGGAAGAGCGGCCGCAGGGAGCGCCTCAAGAGCTCGCCACTCGTGGAGAG
AATTCCACGGGTCTGGCGGTCGACCCCGACGTCGCCGACGGGGGAGCTCA
GGGAGGCAATGGATCCGAGGAGCCGCCGTCCACGTTCGTGGCCCAAGAGC
AGCCcgcaggatacccggagggcCAGGTTGCTTGCCCCGTGCTAAGACGC
TGCTCGCACGTGCTCCCCCATCAGGCGCAGGCCTGTGACGGGCGGTCCCC
GCGCGCGACAACGGGAGCCTTGGGAGACGGTCAGGTGCTGAAAGGGGAGC
CGGTGGGGGtgtgtggaggcggaggggggggagtcaGCGAAGCGGGTCTC
TGCCCCTCTTGCTACGATGCCGCCGCCGAGGAGCGACTCCTGCGCACGCT
TTGGGCTtcgggtggagggagagacatGGGTGAACGCGACGGAGTCTCTG
GGGGGTTCGGAGGAGTGATGTCCTTGGAGGACCAGCTggccccggaggag
gaggaggaggagggacttgACGACGCCTTATTGCAGGAGATGGCTAAGCT
GAAGACGAGTCTGAGCGGGGAGACAGACCGTCGTGAGCAGCTCCGGTCGC
GTTTGGCGAGGAATTTCAAGCAGTGGTGCCTGGCGGCGGACCGCGACGTC
TGA

Coding sequence (CDS) from alignment at CM002458.1:904249..906851+

>rna2108 ID=rna2108|Name=rna2108|organism=Nannochloropsis gaditana|type=CDS|length=5265bp|location=Sequence derived from alignment at CM002458.1:904249..906851+ (Nannochloropsis gaditana)
ATGTCTCTGACAACCGCATGCCACTCCAAGCTCTACGACGACAGGGAGCC
AACATTAGGGCACGGTCTCCACACCCACCTTCATACCCATGATATTTCAT
CCAGACGGACCGATttacccccttcctctttcgaaAATGTCGCagcaaaa
aagaaaaacgtGAACGCGAGAAAGAAATCACATGGACTCTTTTCCCAAAG
CACAGACTCAAAGATGATAACACCTGGCACAAAAGACGATAATGGAACCC
CCACTAATACTGGTTTAGCAGCTTCAGGACAGGCTATATTGGTGGATAAA
TCTCAACTCATTAACTTGTCCTCCCAGTACTCGACCTGCGCCGGCTGCCT
AGCTGCTGTTAAAATGCTTCTCTCAAGACCGCTGAGTGAGTTACGGCTTC
TCAATGCTGTCATGGCCGATGGTCCTTCCAGTacgaccctcctccttcgc
gagCAATTTATGCAGAACCCGTCCCggggggggaccAGACCCGCGACGCC
cctgaaaggggaggacgacagagTCCTCTGGTGCGCAgtcgaggacgtgg
agaggcTCATTGCCTGGGcgcagGACTTTGACTCGCAGGAATTCGCCGCC
TCGGGGCAGCGGCATGCGGCCACGCTCGAGCATGGACAGCGGGAAGTGCG
TGCCATTATCGGCTCggtccttctttcccagtTGCGGGCGGCTTGGCACC
AGCAAACGGCTCACGCTCAATCGGAGCACtacctcttcgccctcgccaTG
CAGGCGATCCGGACGCAGCTTGCCAGTGCCActtttggcgcgaaggaaTA
CAGGCCGACGTCTTTGGCCAAGGATGATGGGAAAGGACTGATGGTGTTGT
CAGCTGCCTCCGCAGCGGAGATGGCGGCGACGCGgctgttggaggaggtg
gaggaagaggagggcgaggcagcCGCCAGGCGGAAGAATAAGAgtcggaa
gaagaaggagcggaAGGCTAGGGCGAAGCTCCGCAAGGCCGCTGGGGGTG
GGAGCTGCAGTAGCAGCGTAGCCTGCGACTCGGGAGGGctcggagagggg
gatgacgaggaggacgacatggagggagggggcggatcTGGTGGGGGGCA
GGTGGAAGAGCGGCCGCAGGGAGCGCCTCAAGAGCTCGCCACTCGTGGAG
AGAATTCCACGGGTCTGGCGGTCGACCCCGACGTCGCCGACGGGGGAGCT
CAGGGAGGCAATGGATCCGAGGAGCCGCCGTCCACGTTCGTGGCCCAAGA
GCAGCCcgcaggatacccggagggcCAGGTTGCTTGCCCCGTGCTAAGAC
GCTGCTCGCACGTGCTCCCCCATCAGGCGCAGGCCTGTGACGGGCGGTCC
CCGCGCGCGACAACGGGAGCCTTGGGAGACGGTCAGGTGCTGAAAGGGGA
GCCGGTGGGGGtgtgtggaggcggaggggggggagtcaGCGAAGCGGGTC
TCTGCCCCTCTTGCTACGATGCCGCCGCCGAGGAGCGACTCCTGCGCACG
CTTTGGGCTtcgggtggagggagagacatGGGTGAACGCGACGGAGTCTC
TGGGGGGTTCGGAGGAGTGATGTCCTTGGAGGACCAGCTggccccggagg
aggaggaggaggagggacttgACGACGCCTTATTGCAGGAGATGGCTAAG
CTGAAGACGAGTCTGAGCGGGGAGACAGACCGTCGTGAGCAGCTCCGGTC
GCGTTTGGCGAGGAATTTCAAGCAGTGGTGCCTGGCGGCGGACCGCGACG
TCTGAATGTCTCTGACAACCGCATGCCACTCCAAGCTCTACGACGACAGG
GAGCCAACATTAGGGCACGGTCTCCACACCCACCTTCATACCCATGATAT
TTCATCCAGACGGACCGATttacccccttcctctttcgaaAATGTCGCag
caaaaaagaaaaacgtGAACGCGAGAAAGAAATCACATGGACTCTTTTCC
CAAAGCACAGACTCAAAGATGATAACACCTGGCACAAAAGACGATAATGG
AACCCCCACTAATACTGGTTTAGCAGCTTCAGGACAGGCTATATTGGTGG
ATAAATCTCAACTCATTAACTTGTCCTCCCAGTACTCGACCTGCGCCGGC
TGCCTAGCTGCTGTTAAAATGCTTCTCTCAAGACCGCTGAGTGAGTTACG
GCTTCTCAATGCTGTCATGGCCGATGGTCCTTCCAGTacgaccctcctcc
ttcgcgagCAATTTATGCAGAACCCGTCCCggggggggaccAGACCCGCG
ACGCCcctgaaaggggaggacgacagagTCCTCTGGTGCGCAgtcgagga
cgtggagaggcTCATTGCCTGGGcgcagGACTTTGACTCGCAGGAATTCG
CCGCCTCGGGGCAGCGGCATGCGGCCACGCTCGAGCATGGACAGCGGGAA
GTGCGTGCCATTATCGGCTCggtccttctttcccagtTGCGGGCGGCTTG
GCACCAGCAAACGGCTCACGCTCAATCGGAGCACtacctcttcgccctcg
ccaTGCAGGCGATCCGGACGCAGCTTGCCAGTGCCActtttggcgcgaag
gaaTACAGGCCGACGTCTTTGGCCAAGGATGATGGGAAAGGACTGATGGT
GTTGTCAGCTGCCTCCGCAGCGGAGATGGCGGCGACGCGgctgttggagg
aggtggaggaagaggagggcgaggcagcCGCCAGGCGGAAGAATAAGAgt
cggaagaagaaggagcggaAGGCTAGGGCGAAGCTCCGCAAGGCCGCTGG
GGGTGGGAGCTGCAGTAGCAGCGTAGCCTGCGACTCGGGAGGGctcggag
agggggatgacgaggaggacgacatggagggagggggcggatcTGGTGGG
GGGCAGGTGGAAGAGCGGCCGCAGGGAGCGCCTCAAGAGCTCGCCACTCG
TGGAGAGAATTCCACGGGTCTGGCGGTCGACCCCGACGTCGCCGACGGGG
GAGCTCAGGGAGGCAATGGATCCGAGGAGCCGCCGTCCACGTTCGTGGCC
CAAGAGCAGCCcgcaggatacccggagggcCAGGTTGCTTGCCCCGTGCT
AAGACGCTGCTCGCACGTGCTCCCCCATCAGGCGCAGGCCTGTGACGGGC
GGTCCCCGCGCGCGACAACGGGAGCCTTGGGAGACGGTCAGGTGCTGAAA
GGGGAGCCGGTGGGGGtgtgtggaggcggaggggggggagtcaGCGAAGC
GGGTCTCTGCCCCTCTTGCTACGATGCCGCCGCCGAGGAGCGACTCCTGC
GCACGCTTTGGGCTtcgggtggagggagagacatGGGTGAACGCGACGGA
GTCTCTGGGGGGTTCGGAGGAGTGATGTCCTTGGAGGACCAGCTggcccc
ggaggaggaggaggaggagggacttgACGACGCCTTATTGCAGGAGATGG
CTAAGCTGAAGACGAGTCTGAGCGGGGAGACAGACCGTCGTGAGCAGCTC
CGGTCGCGTTTGGCGAGGAATTTCAAGCAGTGGTGCCTGGCGGCGGACCG
CGACGTCTGAATGTCTCTGACAACCGCATGCCACTCCAAGCTCTACGACG
ACAGGGAGCCAACATTAGGGCACGGTCTCCACACCCACCTTCATACCCAT
GATATTTCATCCAGACGGACCGATttacccccttcctctttcgaaAATGT
CGCagcaaaaaagaaaaacgtGAACGCGAGAAAGAAATCACATGGACTCT
TTTCCCAAAGCACAGACTCAAAGATGATAACACCTGGCACAAAAGACGAT
AATGGAACCCCCACTAATACTGGTTTAGCAGCTTCAGGACAGGCTATATT
GGTGGATAAATCTCAACTCATTAACTTGTCCTCCCAGTACTCGACCTGCG
CCGGCTGCCTAGCTGCTGTTAAAATGCTTCTCTCAAGACCGCTGAGTGAG
TTACGGCTTCTCAATGCTGTCATGGCCGATGGTCCTTCCAGTacgaccct
cctccttcgcgagCAATTTATGCAGAACCCGTCCCggggggggaccAGAC
CCGCGACGCCcctgaaaggggaggacgacagagTCCTCTGGTGCGCAgtc
gaggacgtggagaggcTCATTGCCTGGGcgcagGACTTTGACTCGCAGGA
ATTCGCCGCCTCGGGGCAGCGGCATGCGGCCACGCTCGAGCATGGACAGC
GGGAAGTGCGTGCCATTATCGGCTCggtccttctttcccagtTGCGGGCG
GCTTGGCACCAGCAAACGGCTCACGCTCAATCGGAGCACtacctcttcgc
cctcgccaTGCAGGCGATCCGGACGCAGCTTGCCAGTGCCActtttggcg
cgaaggaaTACAGGCCGACGTCTTTGGCCAAGGATGATGGGAAAGGACTG
ATGGTGTTGTCAGCTGCCTCCGCAGCGGAGATGGCGGCGACGCGgctgtt
ggaggaggtggaggaagaggagggcgaggcagcCGCCAGGCGGAAGAATA
AGAgtcggaagaagaaggagcggaAGGCTAGGGCGAAGCTCCGCAAGGCC
GCTGGGGGTGGGAGCTGCAGTAGCAGCGTAGCCTGCGACTCGGGAGGGct
cggagagggggatgacgaggaggacgacatggagggagggggcggatcTG
GTGGGGGGCAGGTGGAAGAGCGGCCGCAGGGAGCGCCTCAAGAGCTCGCC
ACTCGTGGAGAGAATTCCACGGGTCTGGCGGTCGACCCCGACGTCGCCGA
CGGGGGAGCTCAGGGAGGCAATGGATCCGAGGAGCCGCCGTCCACGTTCG
TGGCCCAAGAGCAGCCcgcaggatacccggagggcCAGGTTGCTTGCCCC
GTGCTAAGACGCTGCTCGCACGTGCTCCCCCATCAGGCGCAGGCCTGTGA
CGGGCGGTCCCCGCGCGCGACAACGGGAGCCTTGGGAGACGGTCAGGTGC
TGAAAGGGGAGCCGGTGGGGGtgtgtggaggcggaggggggggagtcaGC
GAAGCGGGTCTCTGCCCCTCTTGCTACGATGCCGCCGCCGAGGAGCGACT
CCTGCGCACGCTTTGGGCTtcgggtggagggagagacatGGGTGAACGCG
ACGGAGTCTCTGGGGGGTTCGGAGGAGTGATGTCCTTGGAGGACCAGCTg
gccccggaggaggaggaggaggagggacttgACGACGCCTTATTGCAGGA
GATGGCTAAGCTGAAGACGAGTCTGAGCGGGGAGACAGACCGTCGTGAGC
AGCTCCGGTCGCGTTTGGCGAGGAATTTCAAGCAGTGGTGCCTGGCGGCG
GACCGCGACGTCTGA

Synonyms

Publications