EWM28537.1, cds2100 (CDS) Nannochloropsis gaditana

Overview
NameEWM28537.1
Unique Namecds2100
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:904249..904723 +
Alignment locationCM002458.1:905426..905523 +
Alignment locationCM002458.1:905670..906851 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28537.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g52.580.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:904249..904723 +
CM002458.1supercontigCM002458.1:905426..905523 +
CM002458.1supercontigCM002458.1:905670..906851 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28537.1 vs. NCBI_GenBank
Match: gi|585110955|gb|EWM28537.1| (hypothetical protein Naga_100009g52 [Nannochloropsis gaditana])

HSP 1 Score: 1186.02 bits (3067), Expect = 0.000e+0
Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0
Query:    1 MSLTTACHSKLYDDREPTLGHGLHTHLHTHDISSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASATFGAKEYRPTSLAKDDGKGLMVLSAASAAEMAATRLLEEVEEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEGDDEEDDMEGGGGSGGGQVEERPQGAPQELATRGENSTGLAVDPDVADGGAQGGNGSEEPPSTFVAQEQPAGYPEGQVACPVLRRCSHVLPHQAQACDGRSPRATTGALGDGQVLKGEPVGVCGGGGGGVSEAGLCPSCYDAAAEERLLRTLWASGGGRDMGERDGVSGGFGGVMSLEDQLAPEEEEEEGLDDALLQEMAKLKTSLSGETDRREQLRSRLARNFKQWCLAADRDV 584
            MSLTTACHSKLYDDREPTLGHGLHTHLHTHDISSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASATFGAKEYRPTSLAKDDGKGLMVLSAASAAEMAATRLLEEVEEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEGDDEEDDMEGGGGSGGGQVEERPQGAPQELATRGENSTGLAVDPDVADGGAQGGNGSEEPPSTFVAQEQPAGYPEGQVACPVLRRCSHVLPHQAQACDGRSPRATTGALGDGQVLKGEPVGVCGGGGGGVSEAGLCPSCYDAAAEERLLRTLWASGGGRDMGERDGVSGGFGGVMSLEDQLAPEEEEEEGLDDALLQEMAKLKTSLSGETDRREQLRSRLARNFKQWCLAADRDV
Sbjct:    1 MSLTTACHSKLYDDREPTLGHGLHTHLHTHDISSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASATFGAKEYRPTSLAKDDGKGLMVLSAASAAEMAATRLLEEVEEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEGDDEEDDMEGGGGSGGGQVEERPQGAPQELATRGENSTGLAVDPDVADGGAQGGNGSEEPPSTFVAQEQPAGYPEGQVACPVLRRCSHVLPHQAQACDGRSPRATTGALGDGQVLKGEPVGVCGGGGGGVSEAGLCPSCYDAAAEERLLRTLWASGGGRDMGERDGVSGGFGGVMSLEDQLAPEEEEEEGLDDALLQEMAKLKTSLSGETDRREQLRSRLARNFKQWCLAADRDV 584          
BLAST of EWM28537.1 vs. NCBI_GenBank
Match: gi|298709152|emb|CBJ31096.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.62 bits (283), Expect = 8.503e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 0
Query:  181 EDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQL 257
            +DVE LI W +DFDS+E+  S QRHAATLEHGQRE+R+I+GSVLLSQLR  +H   A  Q E YLFAL +QAIRT +
Sbjct:  159 QDVEELICWHEDFDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRTHI 235          
BLAST of EWM28537.1 vs. NCBI_GenBank
Match: gi|298708283|emb|CBJ48346.1| (hypothetical protein Esi_0002_0099 [Ectocarpus siliculosus])

HSP 1 Score: 98.9821 bits (245), Expect = 4.826e-19
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 0
Query:  175 VLWCAVEDVERLIAWAQDFD--SQEFAASG-QRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLAS 259
            +L C V DVE LI + ++F   SQE  +SG QRHA+TL+ GQREVR+I+G ++LSQLR+ WH QTA  Q+E YLF L + A+RT LA+
Sbjct:    1 MLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAA 88          
The following BLAST results are available for this feature:
BLAST of EWM28537.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110955|gb|EWM28537.1|0.000e+0100.00hypothetical protein Naga_100009g52 [Nannochlorops... [more]
gi|298709152|emb|CBJ31096.1|8.503e-2464.94expressed unknown protein [Ectocarpus siliculosus][more]
gi|298708283|emb|CBJ48346.1|4.826e-1955.68hypothetical protein Esi_0002_0099 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2108rna2108Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications