EWM28537.1, cds2100 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28537.1 vs. NCBI_GenBank
Match: gi|585110955|gb|EWM28537.1| (hypothetical protein Naga_100009g52 [Nannochloropsis gaditana]) HSP 1 Score: 1186.02 bits (3067), Expect = 0.000e+0 Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0 Query: 1 MSLTTACHSKLYDDREPTLGHGLHTHLHTHDISSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASATFGAKEYRPTSLAKDDGKGLMVLSAASAAEMAATRLLEEVEEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEGDDEEDDMEGGGGSGGGQVEERPQGAPQELATRGENSTGLAVDPDVADGGAQGGNGSEEPPSTFVAQEQPAGYPEGQVACPVLRRCSHVLPHQAQACDGRSPRATTGALGDGQVLKGEPVGVCGGGGGGVSEAGLCPSCYDAAAEERLLRTLWASGGGRDMGERDGVSGGFGGVMSLEDQLAPEEEEEEGLDDALLQEMAKLKTSLSGETDRREQLRSRLARNFKQWCLAADRDV 584 MSLTTACHSKLYDDREPTLGHGLHTHLHTHDISSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASATFGAKEYRPTSLAKDDGKGLMVLSAASAAEMAATRLLEEVEEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEGDDEEDDMEGGGGSGGGQVEERPQGAPQELATRGENSTGLAVDPDVADGGAQGGNGSEEPPSTFVAQEQPAGYPEGQVACPVLRRCSHVLPHQAQACDGRSPRATTGALGDGQVLKGEPVGVCGGGGGGVSEAGLCPSCYDAAAEERLLRTLWASGGGRDMGERDGVSGGFGGVMSLEDQLAPEEEEEEGLDDALLQEMAKLKTSLSGETDRREQLRSRLARNFKQWCLAADRDV Sbjct: 1 MSLTTACHSKLYDDREPTLGHGLHTHLHTHDISSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSRGGTRPATPLKGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASATFGAKEYRPTSLAKDDGKGLMVLSAASAAEMAATRLLEEVEEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEGDDEEDDMEGGGGSGGGQVEERPQGAPQELATRGENSTGLAVDPDVADGGAQGGNGSEEPPSTFVAQEQPAGYPEGQVACPVLRRCSHVLPHQAQACDGRSPRATTGALGDGQVLKGEPVGVCGGGGGGVSEAGLCPSCYDAAAEERLLRTLWASGGGRDMGERDGVSGGFGGVMSLEDQLAPEEEEEEGLDDALLQEMAKLKTSLSGETDRREQLRSRLARNFKQWCLAADRDV 584
BLAST of EWM28537.1 vs. NCBI_GenBank
Match: gi|298709152|emb|CBJ31096.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 113.62 bits (283), Expect = 8.503e-24 Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 0 Query: 181 EDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQL 257 +DVE LI W +DFDS+E+ S QRHAATLEHGQRE+R+I+GSVLLSQLR +H A Q E YLFAL +QAIRT + Sbjct: 159 QDVEELICWHEDFDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRTHI 235
BLAST of EWM28537.1 vs. NCBI_GenBank
Match: gi|298708283|emb|CBJ48346.1| (hypothetical protein Esi_0002_0099 [Ectocarpus siliculosus]) HSP 1 Score: 98.9821 bits (245), Expect = 4.826e-19 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 0 Query: 175 VLWCAVEDVERLIAWAQDFD--SQEFAASG-QRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLAS 259 +L C V DVE LI + ++F SQE +SG QRHA+TL+ GQREVR+I+G ++LSQLR+ WH QTA Q+E YLF L + A+RT LA+ Sbjct: 1 MLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAA 88 The following BLAST results are available for this feature:
BLAST of EWM28537.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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