rna2100, rna2100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2100
Unique Name	rna2100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1587
Alignment location	CM002458.1:882224..883643 -

Link to JBrowse

Properties


Property Name	Value
Product	26s proteasome regulatory subunit n7
Orig transcript id	gnl\|cribi\|Naga_100009g61.614.mrna
Orig protein id	gnl\|cribi\|Naga_100009g61.614
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:882224..883643 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g61	gene2008	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2100	rna2100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28571.1	cds2092	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:882224..883643-
coding sequence from alignment at CM002458.1:882224..883643-

mRNA sequence

>rna2100 ID=rna2100|Name=rna2100|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp
GCGGAAAGCGTCCGTCCACACACGCTAGCACAACGATGAAGATCAGCCAG
CGAGTGGCATTGCCTTCCATGTTAGGCACTTCGCCGTGACCAGAAAGGAT
GGTGCCGGCATTTGTGGCGGGAAGGCAGCCCTGGTACGTCTGGGCAGTGT
GGGCCGGAACGCTCCTCCTCCTGTCGCGTCGAGTCTGGCAGGCCTGCGAC
CGCGCAGTGATGGTCAGCGGCGTTGAGGATGAAGGCAGCACTTGCAGCAC
GGGTAGCAGTTTTGAGAGGGCTTTCCCACTCAGATGACAGAAAGCCGACC
TGACCGCACTCTCACACAATTGCCCGGTAGATTCTGTCACAAGATCCACG
ACAGCGGCTATGCGATCTGGAGATGGATAGAACTCCAAGAAGACGCTCTG
GCCTTGGGAACGGCCTCCCCCCCGCGCGCCCTTCTCGCCCTCGGCGTGCA
GGGAGTCCTGGGTCTGTCGGGGGCCTTAGAGGGGGAGGGGGGCTGGTGGA
TTGGCCTGGCGACGCTTTTGATCCTCACGGTGTGCATGCAGAAGGACGTG
ATTCGGGCCCTCTACAGGCCTTGGGTCGCATTCTTTCTGGCGTGCCTGGG
CGGGAAAGAGGACTGGGTGGCTGTGAGCGAGGCGGAGTTGCCAGAGCTGG
AGGACACGGCAGTGATCGCGAATGAAGCCTGGCAAAGAGGGAGAGAGCAG
CGGAAGCCGTCGCAAAGAGAGGGGAAGGAGGTTCGGCACAGGACTATAAA
AGAGGAGGAGGAAGAGGAGGAGGAAGTGGTGGTGGACGAGGTCCGCGATG
TGGCGGGAGAGAGGGGCCTGGGTGACGAAGCTGTCAGAAGAATGCTCACC
GCTCCTTGTGGGGGCAGTTCCTCTCGTTATGGTGGAGCGAAACGAGGTAA
CACCCGGCAGTGTGCCTGCCGCACCCACTGGGACACTAGTAAGCCCTGTG
CTTCTGACTGCGCGGCTTGCAGCGAGGAAGCTGACGGTGTCTTGCCCCCC
TTGCTAGCCTCGAAGCGCGTACCTCCGGCTGGATGGCTAGTCTACGACCC
TATCCTGGGTCTGGTTACCTACGAGGAGTCGATAAAATGGCGGGAAGGGA
GGAGAAGCGCTGGCGACAGGGGTGGAGGGGGCGTGGGCAGGACGAAGGGA
GGGGGCGGTCGAGGCAACGAGGGGAGCCCTCGGACAAAGCCGGGCTCGCG
GAGGGCCAGCAGAACGCAGCAGGGACGAGAGGAAAAGTTGCAAGCGGCGG
CCCGAGCGTACCGCTCTCGAGGCGCCCTGTCCCTCGCTGGTGAGATCGGC
CCGCCGTCCTCCTCCGTGTCGGCCTGAGCCACCTGGGAGAGAGGGGGGAT
GCCGGGGAAATGATTGGGCGATGTACAGAGCACACCCATGCCAGGGTATG
CACGCGTCTGCGCTCGGAAGGGGTGCTAATCGATAGGGGGGAAGGGGGGG
AAGCAATCATCCGTCAAATGTTCATATGTGCGTGTCAGCGCGGTCCCACC
CGCGATTTGAAACGTGCTTAATTCTACAGCCCACGCGGCAATTAAAGATA
GAGAGCACATGTGAAATACAGGACCGTTACTCTGCGT

protein sequence of rna2100

>rna2100-protein ID=rna2100-protein|Name=rna2100|organism=Nannochloropsis gaditana|type=polypeptide|length=449bp
MAVEDISSHTKPPALGNESSGLPEEEEERKAVPDMALAQDLHLLELAQSK
PDEVPDLEEVTNRVLAVIKAEKAEPLYTSVCVEKLGWPVDAALQAELKAS
NEAELAEIEEQLRVATESSGDMEVLDAMIAREKFFARIGNKTAAYAAADE
ILTKPKISTGKRIDAAMDKVRLGLFFRDTEATKENLERAKKLVEDGGDWD
RRNRLKVYEAVALITTRSLKKAAELLLDCIATFTCVELTTYEQFIFYAVI
TNLLYLERTTLKKKLVDGPEVIAVLREKPALGRLLNSLYDCDYRAFFQAL
VEVTPELTRDRYMSPHLRLLVREMRVLVYSQFLESYKSVRVASMADAFGI
SVDFLDRELSRFIAAGRLSAKIDKVGGVVETRRPDSKNAQYLEVVRDGDA
LLNRLSKLARLRAGLGRGKKHSISRDQGIHPNEHKRRVTVLYFTCALYL

mRNA from alignment at CM002458.1:882224..883643-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2100 ID=rna2100|Name=rna2100|organism=Nannochloropsis gaditana|type=mRNA|length=1420bp|location=Sequence derived from alignment at CM002458.1:882224..883643- (Nannochloropsis gaditana)
ATGGCCGTTGAAGATATATCATCCCACACCAAGCCTCCCGCCCTCGGGAA
TGAATCGTCAGGACTTCCTGAAGAGGAGGAGGAGCGCAAGGCGGTGCCCG
ACATGGCCCTAGCTCAAGACCTGCACCTGCTGGAGCTGGCGCAAAGCAAA
CCCGACGAAGTTCCAGACCTGGAAGAGGTGACGAATCGCGTTCTTGCTGT
GATCAAAGCAGAGAAAGCCGAGCCCTTGTACACGAGTGTGTGCGTGGAGA
AGCTGGGTTGGCCTGTAGATGCTGCCTTGCAAGCGGAACTCAAAGCTTCA
AATGAGGCGGAATTGGCAGAAATTGAGGAGCAGCTAAGGGTGGCTACAGA
GAGTTCCGGGGACATGGAAGTACTGGATGCCATGATTGCCCGCGAGAAAT
TTTTCGCGCGAATTGGAAACAAGACGGCAGCATACGCAGCAGCGGATGAG
ATTTTGACTAAACCCAAAATTAGCACAGGCAAGAGGATCGATGCCGCCAT
GGACAAGGTTCGCCTAGGCCTCTTTTTCCGGGACACCGAGGCAACAAAAG
AGAATCTGGAGAGGGCCAAAAAGCTGGTGGAGGACGGGGGCGACTGGGAT
CGGCGGAACCGATTGAAAGTATATGAAGCTGTCGCACTCATCACAACCCG
GTCGCTGAAGAAAGCTGCCGAGCTTCTACTGGATTGCATCGCCACTTTCA
CTTGCGTGGAGCTGACAACGTACGAACAATTCATCTTCTACGCGGTCATC
ACCAACCTCCTGTATTTGGAGAGGACCACGCTCAAGAAAAAATTAGTCGA
CGGGCCCGAAGTGATCGCAGTCCTGAGGGAGAAGCCAGCCCTAGGCCGGC
TGCTGAATTCCCTGTACGACTGTGACTACCGGGCTTTTTTCCAAGCGCTT
GTGGAGGTGACCCCGGAGCTGACCCGCGACCGTTACATGTCTCCACACCT
GCGCCTGCTCGTGCGGGAGATGCGCGTGCTCGTGTACTCCCAGTTCCTGG
AGTCCTACAAGAGCGTTCGCGTGGCCTCCATGGCCGACGCCTTCGGGATC
TCGGTCGATTTTCTCGACCGGGAGCTCTCCCGCTTCATCGCGGCGGGGAG
GCTGAGCGCCAAGATCGACAAGGTGGGGGGCGTGGTGGAGACGCGGCGAC
CGGACTCGAAAAACGCCCAGTACCTGGAGGTGGTGCGGGATGGGGACGCT
TTGCTGAACCGGCTCTCGAAGTTGGCGCGGCTGGTGGACTTTTAGGGTTG
GCGTGAGGCCCAAAAGGCGTCGCTGCCGCCGTGGGGACGGCAAGGCGGGA
CAGAGGGCGGGGTTGGGGAGAGGAAAGAAACACAGTATCTCTCGTGACCA
GGGTATTCACCCAAACGAACACAAACGCAGAGTAACGGTCCTGTATTTCA
CATGTGCTCTCTATCTTTAA

Coding sequence (CDS) from alignment at CM002458.1:882224..883643-

>rna2100 ID=rna2100|Name=rna2100|organism=Nannochloropsis gaditana|type=CDS|length=2700bp|location=Sequence derived from alignment at CM002458.1:882224..883643- (Nannochloropsis gaditana)
AGGGCGGGGTTGGGGAGAGGAAAGAAACACAGTATCTCTCGTGACCAGGG
TATTCACCCAAACGAACACAAACGCAGAGTAACGGTCCTGTATTTCACAT
GTGCTCTCTATCTTTAAATGGCCGTTGAAGATATATCATCCCACACCAAG
CCTCCCGCCCTCGGGAATGAATCGTCAGGACTTCCTGAAGAGGAGGAGGA
GCGCAAGGCGGTGCCCGACATGGCCCTAGCTCAAGACCTGCACCTGCTGG
AGCTGGCGCAAAGCAAACCCGACGAAGTTCCAGACCTGGAAGAGGTGACG
AATCGCGTTCTTGCTGTGATCAAAGCAGAGAAAGCCGAGCCCTTGTACAC
GAGTGTGTGCGTGGAGAAGCTGGGTTGGCCTGTAGATGCTGCCTTGCAAG
CGGAACTCAAAGCTTCAAATGAGGCGGAATTGGCAGAAATTGAGGAGCAG
CTAAGGGTGGCTACAGAGAGTTCCGGGGACATGGAAGTACTGGATGCCAT
GATTGCCCGCGAGAAATTTTTCGCGCGAATTGGAAACAAGACGGCAGCAT
ACGCAGCAGCGGATGAGATTTTGACTAAACCCAAAATTAGCACAGGCAAG
AGGATCGATGCCGCCATGGACAAGGTTCGCCTAGGCCTCTTTTTCCGGGA
CACCGAGGCAACAAAAGAGAATCTGGAGAGGGCCAAAAAGCTGGTGGAGG
ACGGGGGCGACTGGGATCGGCGGAACCGATTGAAAGTATATGAAGCTGTC
GCACTCATCACAACCCGGTCGCTGAAGAAAGCTGCCGAGCTTCTACTGGA
TTGCATCGCCACTTTCACTTGCGTGGAGCTGACAACGTACGAACAATTCA
TCTTCTACGCGGTCATCACCAACCTCCTGTATTTGGAGAGGACCACGCTC
AAGAAAAAATTAGTCGACGGGCCCGAAGTGATCGCAGTCCTGAGGGAGAA
GCCAGCCCTAGGCCGGCTGCTGAATTCCCTGTACGACTGTGACTACCGGG
CTTTTTTCCAAGCGCTTGTGGAGGTGACCCCGGAGCTGACCCGCGACCGT
TACATGTCTCCACACCTGCGCCTGCTCGTGCGGGAGATGCGCGTGCTCGT
GTACTCCCAGTTCCTGGAGTCCTACAAGAGCGTTCGCGTGGCCTCCATGG
CCGACGCCTTCGGGATCTCGGTCGATTTTCTCGACCGGGAGCTCTCCCGC
TTCATCGCGGCGGGGAGGCTGAGCGCCAAGATCGACAAGGTGGGGGGCGT
GGTGGAGACGCGGCGACCGGACTCGAAAAACGCCCAGTACCTGGAGGTGG
TGCGGGATGGGGACGCTTTGCTGAACCGGCTCTCGAAGTTGGCGCGGCTG
AGGGCGGGGTTGGGGAGAGGAAAGAAACACAGTATCTCTCGTGACCAGGG
TATTCACCCAAACGAACACAAACGCAGAGTAACGGTCCTGTATTTCACAT
GTGCTCTCTATCTTTAAATGGCCGTTGAAGATATATCATCCCACACCAAG
CCTCCCGCCCTCGGGAATGAATCGTCAGGACTTCCTGAAGAGGAGGAGGA
GCGCAAGGCGGTGCCCGACATGGCCCTAGCTCAAGACCTGCACCTGCTGG
AGCTGGCGCAAAGCAAACCCGACGAAGTTCCAGACCTGGAAGAGGTGACG
AATCGCGTTCTTGCTGTGATCAAAGCAGAGAAAGCCGAGCCCTTGTACAC
GAGTGTGTGCGTGGAGAAGCTGGGTTGGCCTGTAGATGCTGCCTTGCAAG
CGGAACTCAAAGCTTCAAATGAGGCGGAATTGGCAGAAATTGAGGAGCAG
CTAAGGGTGGCTACAGAGAGTTCCGGGGACATGGAAGTACTGGATGCCAT
GATTGCCCGCGAGAAATTTTTCGCGCGAATTGGAAACAAGACGGCAGCAT
ACGCAGCAGCGGATGAGATTTTGACTAAACCCAAAATTAGCACAGGCAAG
AGGATCGATGCCGCCATGGACAAGGTTCGCCTAGGCCTCTTTTTCCGGGA
CACCGAGGCAACAAAAGAGAATCTGGAGAGGGCCAAAAAGCTGGTGGAGG
ACGGGGGCGACTGGGATCGGCGGAACCGATTGAAAGTATATGAAGCTGTC
GCACTCATCACAACCCGGTCGCTGAAGAAAGCTGCCGAGCTTCTACTGGA
TTGCATCGCCACTTTCACTTGCGTGGAGCTGACAACGTACGAACAATTCA
TCTTCTACGCGGTCATCACCAACCTCCTGTATTTGGAGAGGACCACGCTC
AAGAAAAAATTAGTCGACGGGCCCGAAGTGATCGCAGTCCTGAGGGAGAA
GCCAGCCCTAGGCCGGCTGCTGAATTCCCTGTACGACTGTGACTACCGGG
CTTTTTTCCAAGCGCTTGTGGAGGTGACCCCGGAGCTGACCCGCGACCGT
TACATGTCTCCACACCTGCGCCTGCTCGTGCGGGAGATGCGCGTGCTCGT
GTACTCCCAGTTCCTGGAGTCCTACAAGAGCGTTCGCGTGGCCTCCATGG
CCGACGCCTTCGGGATCTCGGTCGATTTTCTCGACCGGGAGCTCTCCCGC
TTCATCGCGGCGGGGAGGCTGAGCGCCAAGATCGACAAGGTGGGGGGCGT
GGTGGAGACGCGGCGACCGGACTCGAAAAACGCCCAGTACCTGGAGGTGG
TGCGGGATGGGGACGCTTTGCTGAACCGGCTCTCGAAGTTGGCGCGGCTG

Synonyms

Publications