rna2098, rna2098 (mRNA) Nannochloropsis gaditana

Overview
Namerna2098
Unique Namerna2098
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002458.1:880319..882269 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g62.643.mrna
Orig protein idgnl|cribi|Naga_100009g62.643
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:880319..882269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g62gene2007Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2098rna2098-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28600.1cds2090Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2098 ID=rna2098|Name=rna2098|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGGCTGAGGAAGCTGCTGCGACTATCGAGGATTACGACTTCTCGGGAAC
GACGGCAGGGGCTTCGGACGTGTTCCCTTCCGAAGCCGGGCAGATCAAGA
AAGGTGGCTACATCATGATCAAGGGCCGTCCGTGCAAGGTGGTGAATGTC
TCGACCTCCAAGACGGGGAAGCACGGGCACGCCAAGGCAAATTTTACGGC
CATCGACATCTTCAATGGGAAGAAGGTGGAAGACGTGGTGCCTACCACAC
ACACCACGTATGTGCCCAACGTGAACCGCTCTGAGTACCAGCTCCTGGAC
ATCGAGGACGGCTTTGTCTCGCTCCTGCAGGAGGACGGCGGGACGCGCGA
CGACTTGAAGCTTCCGGACTACCCCGAGGGCTTCGACCAGGAAATCTTGA
AGGCCTACCAGGACGGCAAATCCCTCTCCGTCTCCGTCCTTTCCGCCTGC
GGCATTGACCAGATCATTGCGTACAAGGAGGAAGCGTAA
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protein sequence of rna2098

>rna2098-protein ID=rna2098-protein|Name=rna2098|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MVPAFVAGRQPWYVWAVWAGTLLLLSRRVWQACDRAVMVSGVEDEGSTCS
TGSSFERAFPLRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALG
VQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAFFLAC
LGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRT
IKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKR
GNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAGWLVY
DPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPG
SRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA
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mRNA from alignment at CM002458.1:880319..882269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2098 ID=rna2098|Name=rna2098|organism=Nannochloropsis gaditana|type=mRNA|length=1951bp|location=Sequence derived from alignment at CM002458.1:880319..882269+ (Nannochloropsis gaditana)
ACGTATGCCTTGTGGCGTATCACGATATGGGACTGAGTGCGATCACCCCG
GTCATGCTATTTCCGCACGCGACTTGCCCTATCAGCTAGAACTTGAGACC
TAACCAGACGAAAACACACGACATACCAGGTAATAAAGCGGAAAGCGTCC
GTCCACACACGCTAGCACAACGATGAAGATCAGCCAGCGAGTGGCATTGC
CTTCCATGTTAGGCACTTCGCCGTGACCAGAAAGGATGGTGCCGGCATTT
GTGGCGGGAAGGCAGCCCTGGTACGTCTGGGCAGTGTGGGCCGgaacgct
cctcctcctgtcgcgTCGAGTCTGGCAGGCCTGCGACCGCGCAGTGATGG
TCAGCGGCGTTGAGGATGAAGGCAGCACTTGCAGCACGGGTAGCAGTTTT
GAGAGGGCTTTCCCACTCAGGTTAGTGAGGTGAAATGAGGACATAATAAG
ATCGGGAGTTCCTCACGGTGCCATTCCGGTAGCGCGTTTGGGGCTAGAAA
GCTAGAAATTAGAATGTTTGTTTTTCCGTATACCTTACGCCGGACTATTA
CGCAGCCGTGATTTTGCTCATTCGCATTTCGCTTGGCCAGTCAGTGAACT
GCACAAATTTCTGGCGCTCATTATGGCTCTTGGTGTGCTTCAATTAGATG
ACAGAAAGCCGACCTGACCGCACTCTCACACAATTGCCCGGTAGATTCTG
TCACAAGATCCACGACAGCGGCTATGCGATCTGGAGATGGATAGAACTCC
AAGAAGACGCTCTGGCCTTGGGaacggcctcccccccgcgcgcccttctc
gccctcggcGTGCAGGGAGTCCTGGGTCTGTCGGGGGCCttagaggggga
ggggggctggtGGATTGGCCTGGCGACGCTTTTGATCCTCACGGTGTGCA
TGCAGAAGGACGTGATTCGGGCCCTCTACAGGCCTTGGGTCGCATTCTTT
CTGGCGTgcctgggcgggaaagaggactgGGTGGCTGTGAGCGAGGCGGA
GTTGCCAGAGCTGGAGGACACGGCAGTGATCGCGAATGAAGCctggcaaa
gagggagagagcagcgGAAGCCGTCgcaaagagaggggaaggaggttcgg
CACAGGACTataaaagaggaggaggaagaggaggaggaagtggtggtgga
cgaggtccGCGAtgtggcgggagagaggggcctgGGTGACGAAGCTGTCA
GAAGAATGCTCACCGCTCCTTGTGGGGGCAGTTCCTCTCGTTATGGTGGA
GCGAAACGAGGTAACACCCGGCAGTGTGCCTGCCGCACCCACTGGGACAC
TAGTAAGCCCTGTGCTTCTGACTGCGCGGCTTGCAGCGAGGAAGCTGACG
GTGTCTTGCCCCCCTTGCTAGCCTCGAAGCGCGTACCTCCGGCTGGATGG
CTAGTCTACGACCCTATCCTGGGTCTGGTTACCTACGAGGAGTCGATAAA
atggcgggaagggaggagaagcgctggcgacaggggtggagggggcgtgg
gcaggacgaagggagggggcggtcgAGGCAACGAGGGGAGCCCTCGGACA
AAGCCGGGCTCGCGGAGGGCCAGCAGAACGCAGCAGGGACGAGAGGAAAA
GTTGCAAGCGGCGGCCCGAGCGTACCGCTCTCGAGGCGCCCTGTCCCTCG
CTGGTGAGATCggcccgccgtcctcctccgtgtcggCCTGAGCCacctgg
gagagaggggggatgcCGGGGAAATGATTGGGCGATGTACAGAGCACACC
CATGCCAGGGTATGCACGCGTCTGCGCTCGGAAGGGGTGCTAATCGatag
gggggaagggggggaagcaatCATCCGTCAAATGTTCATATGTGCGTGTC
AGCGCGGTCCCACCCGCGATTTGAAACGTGCTTAATTCTACAGCCCACGC
GGCAATTAAAGATAGAGAGCACATGTGAAATACAGGACCGTTACTCTGCG
T
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Coding sequence (CDS) from alignment at CM002458.1:880319..882269+

>rna2098 ID=rna2098|Name=rna2098|organism=Nannochloropsis gaditana|type=CDS|length=2364bp|location=Sequence derived from alignment at CM002458.1:880319..882269+ (Nannochloropsis gaditana)
ATGGTGCCGGCATTTGTGGCGGGAAGGCAGCCCTGGTACGTCTGGGCAGT
GTGGGCCGgaacgctcctcctcctgtcgcgTCGAGTCTGGCAGGCCTGCG
ACCGCGCAGTGATGGTCAGCGGCGTTGAGGATGAAGGCAGCACTTGCAGC
ACGGGTAGCAGTTTTGAGAGGGCTTTCCCACTCAGATTCTGTCACAAGAT
CCACGACAGCGGCTATGCGATCTGGAGATGGATAGAACTCCAAGAAGACG
CTCTGGCCTTGGGaacggcctcccccccgcgcgcccttctcgccctcggc
GTGCAGGGAGTCCTGGGTCTGTCGGGGGCCttagagggggaggggggctg
gtGGATTGGCCTGGCGACGCTTTTGATCCTCACGGTGTGCATGCAGAAGG
ACGTGATTCGGGCCCTCTACAGGCCTTGGGTCGCATTCTTTCTGGCGTgc
ctgggcgggaaagaggactgGGTGGCTGTGAGCGAGGCGGAGTTGCCAGA
GCTGGAGGACACGGCAGTGATCGCGAATGAAGCctggcaaagagggagag
agcagcgGAAGCCGTCgcaaagagaggggaaggaggttcggCACAGGACT
ataaaagaggaggaggaagaggaggaggaagtggtggtggacgaggtccG
CGAtgtggcgggagagaggggcctgGGTGACGAAGCTGTCAGAAGAATGC
TCACCGCTCCTTGTGGGGGCAGTTCCTCTCGTTATGGTGGAGCGAAACGA
GGTAACACCCGGCAGTGTGCCTGCCGCACCCACTGGGACACTAGTAAGCC
CTGTGCTTCTGACTGCGCGGCTTGCAGCGAGGAAGCTGACGGTGTCTTGC
CCCCCTTGCTAGCCTCGAAGCGCGTACCTCCGGCTGGATGGCTAGTCTAC
GACCCTATCCTGGGTCTGGTTACCTACGAGGAGTCGATAAAatggcggga
agggaggagaagcgctggcgacaggggtggagggggcgtgggcaggacga
agggagggggcggtcgAGGCAACGAGGGGAGCCCTCGGACAAAGCCGGGC
TCGCGGAGGGCCAGCAGAACGCAGCAGGGACGAGAGGAAAAGTTGCAAGC
GGCGGCCCGAGCGTACCGCTCTCGAGGCGCCCTGTCCCTCGCTGGTGAGA
TCggcccgccgtcctcctccgtgtcggCCTGAATGGTGCCGGCATTTGTG
GCGGGAAGGCAGCCCTGGTACGTCTGGGCAGTGTGGGCCGgaacgctcct
cctcctgtcgcgTCGAGTCTGGCAGGCCTGCGACCGCGCAGTGATGGTCA
GCGGCGTTGAGGATGAAGGCAGCACTTGCAGCACGGGTAGCAGTTTTGAG
AGGGCTTTCCCACTCAGATTCTGTCACAAGATCCACGACAGCGGCTATGC
GATCTGGAGATGGATAGAACTCCAAGAAGACGCTCTGGCCTTGGGaacgg
cctcccccccgcgcgcccttctcgccctcggcGTGCAGGGAGTCCTGGGT
CTGTCGGGGGCCttagagggggaggggggctggtGGATTGGCCTGGCGAC
GCTTTTGATCCTCACGGTGTGCATGCAGAAGGACGTGATTCGGGCCCTCT
ACAGGCCTTGGGTCGCATTCTTTCTGGCGTgcctgggcgggaaagaggac
tgGGTGGCTGTGAGCGAGGCGGAGTTGCCAGAGCTGGAGGACACGGCAGT
GATCGCGAATGAAGCctggcaaagagggagagagcagcgGAAGCCGTCgc
aaagagaggggaaggaggttcggCACAGGACTataaaagaggaggaggaa
gaggaggaggaagtggtggtggacgaggtccGCGAtgtggcgggagagag
gggcctgGGTGACGAAGCTGTCAGAAGAATGCTCACCGCTCCTTGTGGGG
GCAGTTCCTCTCGTTATGGTGGAGCGAAACGAGGTAACACCCGGCAGTGT
GCCTGCCGCACCCACTGGGACACTAGTAAGCCCTGTGCTTCTGACTGCGC
GGCTTGCAGCGAGGAAGCTGACGGTGTCTTGCCCCCCTTGCTAGCCTCGA
AGCGCGTACCTCCGGCTGGATGGCTAGTCTACGACCCTATCCTGGGTCTG
GTTACCTACGAGGAGTCGATAAAatggcgggaagggaggagaagcgctgg
cgacaggggtggagggggcgtgggcaggacgaagggagggggcggtcgAG
GCAACGAGGGGAGCCCTCGGACAAAGCCGGGCTCGCGGAGGGCCAGCAGA
ACGCAGCAGGGACGAGAGGAAAAGTTGCAAGCGGCGGCCCGAGCGTACCG
CTCTCGAGGCGCCCTGTCCCTCGCTGGTGAGATCggcccgccgtcctcct
ccgtgtcggCCTGA
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Synonyms
Publications