EWM28600.1, cds2090 (CDS) Nannochloropsis gaditana

Overview
NameEWM28600.1
Unique Namecds2090
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:880554..880738 +
Alignment locationCM002458.1:881013..882009 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28600.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g62.643.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:880554..880738 +
CM002458.1supercontigCM002458.1:881013..882009 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28600.1 vs. NCBI_GenBank
Match: gi|585111018|gb|EWM28600.1| (hypothetical protein Naga_100009g62 [Nannochloropsis gaditana])

HSP 1 Score: 781.171 bits (2016), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0 
Query:    1 MVPAFVAGRQPWYVWAVWAGTLLLLSRRVWQACDRAVMVSGVEDEGSTCSTGSSFERAFPLRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAFFLACLGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAGWLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPGSRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA 393
            MVPAFVAGRQPWYVWAVWAGTLLLLSRRVWQACDRAVMVSGVEDEGSTCSTGSSFERAFPLRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAFFLACLGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAGWLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPGSRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA
Sbjct:    1 MVPAFVAGRQPWYVWAVWAGTLLLLSRRVWQACDRAVMVSGVEDEGSTCSTGSSFERAFPLRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAFFLACLGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAGWLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPGSRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA 393
[Close]
BLAST of EWM28600.1 vs. NCBI_GenBank
Match: gi|585111019|gb|EWM28601.1| (hypothetical protein Naga_100009g62 [Nannochloropsis gaditana])

HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0
Identity = 333/335 (99.40%), Postives = 333/335 (99.40%), Query Frame = 0 
Query:   59 FPLRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAFFLACLGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAGWLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPGSRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA 393
             P RFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAFFLACLGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAGWLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPGSRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA
Sbjct:   13 LPGRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAFFLACLGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAGWLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPRTKPGSRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA 347
The following BLAST results are available for this feature:
BLAST of EWM28600.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111018|gb|EWM28600.1|0.000e+0100.00hypothetical protein Naga_100009g62 [Nannochlorops... [more]
gi|585111019|gb|EWM28601.1|0.000e+099.40hypothetical protein Naga_100009g62 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2098rna2098Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications