rna2096, rna2096 (mRNA) Nannochloropsis gaditana

Overview
Namerna2096
Unique Namerna2096
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1089
Alignment locationCM002458.1:878203..878816 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g64.594.mrna
Orig protein idgnl|cribi|Naga_100009g64.594
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:878203..878816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g64gene2005Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2096rna2096-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28551.1cds2088Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2096 ID=rna2096|Name=rna2096|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp
AATGTCCGCTATTCGTCGTCGTGTTCGCTTTGCCTTTTGACCACGTCCTT
ACTGAGGGGTTACTTACCATACATTACCACCCGCATATAGAAATTTGCGA
GCAATGCACCATCTTCATACCTCTGTCGAGGCTAAAAGCTCCTTGTTTTC
GAGTAGCAGATTCTCCGAGTCTACAACCTCATCGTTGAATACTGCTCACA
GTTTCTCCGAGCTTGGCGGGCCAGCAGGAAAACATAAGGCAGCTGTGAGG
TCATTGGGTTGGCGCAGCATCTACATGTTTGTGTCTTTGCTCGCATTATT
GGGAGCCACTGGAAGCCAAAGTAAAATTGTCGAATTTATCTGCAAACAGC
TGGGTGGGAGCAACAAGTGTCCGGCGATGCCCACGTGTCCAGCAGGAGAG
GCTTTGCGTCACAAACCGCACTCAAAGCCGTCTTACGATGGGTGCGGGAC
CCACGGGGTCAAGGTGAGTCTGAGCCCAACGGACTTTTCATCATGCTGTA
ATCTACACGACCTGTGCTATGGTCAGTGTGGAAGCCCGAAAAAGGAATGT
GACGAGTATTTTGAAGGGTGCATGATAGCGCAATGTCACAGGGAGCACCA
CATCCCTAGCAACAGCAGTATCGACAGTCATCACCACAATCCGAAAAGGC
AATCCAAGGAACTTAGACGCTGCGTGCGGGCAGCCAGATTGTATTATCAC
GGCGTGTATGGATTCGGTTGTTTTGCGTACAGAAAAGCTCAAAAGCAGCA
CTGTGAGTGTGGGCCCATAGGCGAGGGAGAGGAGGGGGAAGGAATCGTAA
GAGAACGACTCGCCGGTGGCCGCGGAGGTGAGAGTCTAGGAGGACTGTAT
GCCCTGATGGAGAGGGCGGCTCAAGCTATGACCCCGACGGCCGGGGCGGT
CCACTGGAAGTGGGAAGAATTTTTGTGAAGGGAATGCGCAGCGAAAAGTT
ATGTGGAACAGGACCGGGACAAGCGGCGAAGGTGCATGACACCATGAATT
TTCAATTCAAGACATGACAGCAGTGCCTCAGATTAACAAAAAGGGTCCGA
AAGGGAAAGAGGAGAAAGAAAGAACCGTACGATAAAGAG
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protein sequence of rna2096

>rna2096-protein ID=rna2096-protein|Name=rna2096|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MDPHKSNQEQHKGGCTHVSTCFSLVYLGTFGWIRGCVGGWDCVACLTTEV
GTRSVSNVGQRACVCGKGCRGGSRLRSRLFRGRVGGSCLEVCLQGSEGKK
TEIKGGEIWRMDGRNHQPRSNPHNGWGESTNTVQRHGHPGRMLFIVRFFL
SPLSLSDPFC
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mRNA from alignment at CM002458.1:878203..878816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2096 ID=rna2096|Name=rna2096|organism=Nannochloropsis gaditana|type=mRNA|length=614bp|location=Sequence derived from alignment at CM002458.1:878203..878816- (Nannochloropsis gaditana)
ATGGACGTCAGGATTAGGGGAAGCGGAGGAGGATAATGTGAGAAAAAGCA
GTTTCCTATACGCAACAGCCTCACAAAAGCAATCAGGAACAGCATAAAGG
CGGTTGTACACACGTTTCAACGTGTTTTTCTCTAGTTTATCTTGGAACGT
TTGGTTGGATAAGGGGCTGTGTAGGGGGCTGGGTGGGGAGGGAGAGGAGG
AAAGGGGAATGAGCTCTTCCTGGTCCGGTTTCTGACGTACTTGTGCGCTA
GGATTGCGTTGCTTGTTTGACGACAGAAGTGGGAACGAGAAGCGTGTCAA
ATGTGGGCCAGCGTGCTTGTGTGTGCGGAAAAGGGTGTCGTGGAGGGTCA
CGACTGCGAAGTCGCTTGTTTAGGGGCAGGGTGGGTGGTTCATGTTTGGA
GGTGTGTCTTCAGGGGTCGGAAGGGAAGAAGACAGAAATAAAAGGAGGGG
AAATATGGCGAATGGATGGGCGCAACCATCAGCCTAGAAGCAATCCTCAC
AACGGATGGGGGGAGAGTACAAACACCGTCCAACGCCACGGTCATCCGGG
GCGGATGCTCTTTATCGTACGGTTCTTTCTTTCTCCTCTTTCCCTTTCGG
ACCCTTTTTGTTAA
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Coding sequence (CDS) from alignment at CM002458.1:878203..878816-

>rna2096 ID=rna2096|Name=rna2096|organism=Nannochloropsis gaditana|type=CDS|length=1449bp|location=Sequence derived from alignment at CM002458.1:878203..878816- (Nannochloropsis gaditana)
GATTGCGTTGCTTGTTTGACGACAGAAGTGGGAACGAGAAGCGTGTCAAA
TGTGGGCCAGCGTGCTTGTGTGTGCGGAAAAGGGTGTCGTGGAGGGTCAC
GACTGCGAAGTCGCTTGTTTAGGGGCAGGGTGGGTGGTTCATGTTTGGAG
GTGTGTCTTCAGGGGTCGGAAGGGAAGAAGACAGAAATAAAAGGAGGGGA
AATATGGCGAATGGATGGGCGCAACCATCAGCCTAGAAGCAATCCTCACA
ACGGATGGGGGGAGAGTACAAACACCGTCCAACGCCACGGTCATCCGGGG
CGGATGCTCTTTATCGTACGGTTCTTTCTTTCTCCTCTTTCCCTTTCGGA
CCCTTTTTGTTAACCTCACAAAAGCAATCAGGAACAGCATAAAGGCGGTT
GTACACACGTTTCAACGTGTTTTTCTCTAGTTTATCTTGGAACGTTTGGT
TGGATAAGGGGCTGTGTAGGGGGCTGGATGGACGATTGCGTTGCTTGTTT
GACGACAGAAGTGGGAACGAGAAGCGTGTCAAATGTGGGCCAGCGTGCTT
GTGTGTGCGGAAAAGGGTGTCGTGGAGGGTCACGACTGCGAAGTCGCTTG
TTTAGGGGCAGGGTGGGTGGTTCATGTTTGGAGGTGTGTCTTCAGGGGTC
GGAAGGGAAGAAGACAGAAATAAAAGGAGGGGAAATATGGCGAATGGATG
GGCGCAACCATCAGCCTAGAAGCAATCCTCACAACGGATGGGGGGAGAGT
ACAAACACCGTCCAACGCCACGGTCATCCGGGGCGGATGCTCTTTATCGT
ACGGTTCTTTCTTTCTCCTCTTTCCCTTTCGGACCCTTTTTGTTAACCTC
ACAAAAGCAATCAGGAACAGCATAAAGGCGGTTGTACACACGTTTCAACG
TGTTTTTCTCTAGTTTATCTTGGAACGTTTGGTTGGATAAGGGGCTGTGT
AGGGGGCTGGATGGACGATTGCGTTGCTTGTTTGACGACAGAAGTGGGAA
CGAGAAGCGTGTCAAATGTGGGCCAGCGTGCTTGTGTGTGCGGAAAAGGG
TGTCGTGGAGGGTCACGACTGCGAAGTCGCTTGTTTAGGGGCAGGGTGGG
TGGTTCATGTTTGGAGGTGTGTCTTCAGGGGTCGGAAGGGAAGAAGACAG
AAATAAAAGGAGGGGAAATATGGCGAATGGATGGGCGCAACCATCAGCCT
AGAAGCAATCCTCACAACGGATGGGGGGAGAGTACAAACACCGTCCAACG
CCACGGTCATCCGGGGCGGATGCTCTTTATCGTACGGTTCTTTCTTTCTC
CTCTTTCCCTTTCGGACCCTTTTTGTTAACCTCACAAAAGCAATCAGGAA
CAGCATAAAGGCGGTTGTACACACGTTTCAACGTGTTTTTCTCTAGTTTA
TCTTGGAACGTTTGGTTGGATAAGGGGCTGTGTAGGGGGCTGGATGGAC
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Synonyms
Publications