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Properties
| Property Name | Value |
|---|
| Product | amidase protein |
| Orig transcript id | gnl|cribi|Naga_100009g66.661.mrna |
| Orig protein id | gnl|cribi|Naga_100009g66.661 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:873670..876588 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2093 ID=rna2093|Name=rna2093|organism=Nannochloropsis gaditana|type=mRNA|length=1380bp
ATGCTTTTCACCCTCTCTCTGAAAAAGCCAGCCCTTGCCGCCGGACGTCT
CTCGGCTGCTCGTGCCGCTTCGACTATCACAGCGATCAAGGGCCGCCAAA
TTATCGACTCTCGCGGGAACCCGACAGTGGAGGTAGACTTGTTCACGAAG
GACGGAAAATTCACAGCTTCTGTACCTTCAGGTGCTTCGACTGGAATTTA
CGAGGCCATGGAGCTCAGAGACGGGGGCAAGGCTTTCATGGGGAAGGGTG
TTACGAAAGCGGTCAATAATGTTAACACCGCCCTCGCAAAGGCCCTGGCC
GGACAAGACGTGACACAGCAGGCAACGCTTGACAAGATGATGATTGAGCT
TGATGGCACGGAGAATAAGAGCAAATTGGGAGCTAATGCGATTCTCGGCG
TGTCTTTGGCCGCCGCCAAGGCAGGTGCTGCTGCAAAACAAGTCCCCCTC
TACAAGCATTTTGGAGACTTGGCGGGCAACACCAAATTTGTACTGCCTGT
TCCTTCTTTCAACGTGATCAACGGGGGTAGCCACGCTGGAAATAAACTGG
CCTTTCAAGAATTCATGATCCTACCCACGGGTGCCTCCACGTTCTCCGAG
GCGATGGCGATCGGTTGCGAAGTGTACCACCACCTGGCGAAGGTCATCAA
AGCTAAGTACGGTCAGGACGCCGTGAACGTCGGGGACGAGGGCGGCTTTG
CACCGAATATCCAGAGCAATACGGAAGGGGTCGAGCTGCTTATGTCCGCC
ATTGAGAAGGCCGGGTACTTGGAGAAGGTCAAGCTCGGCATGGACGTTGC
CTCCTCCGAGTTCCTGACGAAGGATGGAAAGTACGACCTGGACTTCAAGA
ACCCGCAGGGCGATGGGAAACAAGTCTTGACGGGCCCGCAACTTGCGGAT
ATGTACATGGAGCTGTCGAACAAGTACCCCATCGTTTCGATCGAGGACCC
CTTCGACCAGGACGACTGGGCGAACTACACCCCCTTCACGGCCGCCATAG
GCAGCAAGGTTCAGGTCGTGGGGGACGACTTGCTCGTGACCAACCCGAAG
CGCATCAAGGAAGCGGCGCAGAAGAAGGCTTGCAACGCCCTCCTTCTCAA
AGTGAACCAGATCGGGTCGGTCACTGAATCTATCGAGGCGGTGAAGGACT
CTAAGAAGAACGGATGGGGCGTGATGACTTCCCACCGATCTGGGGAGACG
GAGGATAGCTACATTGCCGATCTGGCCGTGGGGCTGTGCACTGGGCAGAT
CAAAACAGGGGCTCCCTGCCGGTCTGAACGCCTTGCCAAGTACAACCAAC
TGCTGCGTATAGAAGAGGACCTGGGAAGCAAGGCTGTGTACGCTGGGAAG
TCCTTTCGAGTGCCTGCCTGGATGGCTTGA back to topprotein sequence of rna2093 >rna2093-protein ID=rna2093-protein|Name=rna2093|organism=Nannochloropsis gaditana|type=polypeptide|length=620bp
MFWWLSTAAERLQRKARAKRAEFEAKWAQPLPPLAPELDAAKETKIALEL
SIEDLVALMQDGTFSSHDVVSVLAKRAREFGGPAGVNALTDVLFEEAFVE
ARRKDRDRQRGGGESDAVGVLEGIPLSVKDHIDVKGTDSTTGAACRCFRP
ASKDALVVELLRDAGAIVLCKTNVPQCLMLPETSNNIWGVTSSPWNLTRS
AGGSSGGEAALVAVRGSLVGIGTDIGGSCRGPAHFSGCVGFKPTPARVSG
KGIVMPSKSGKMGMQAIRATAGPLANRVEDVALVCQAWWVNKMWARDPYV
VPLPFDHAAYRRGVTKEAQQWERGGGGEQTRDGGKGRQEEASSPGGRKIR
LGWFLSDDFFEPCRAGKRAVREAKQALESTGKYELVEMRLSTATDGWEAV
RLYYNIMTAEGGLRSYIDALEGEAMIPMYRNIRLAACFPDFLRPLLHTAL
YLTGEKRRRFLVKNMRRDGLATRTYWQYCEELQNYQEAWTRMMQTQKLDG
FLCPSVALPAFPHGWSSHLESSCSYNLFLNLLHYPAGVIPVTQVRADEAV
YPISDLPRMQRDSIARAAAIAMQGSEALPVSVQVAFPPFQDEMCLHVMKD
LQDAVGFTALPPYAKRSVFN back to topmRNA from alignment at CM002458.1:873670..876588+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2093 ID=rna2093|Name=rna2093|organism=Nannochloropsis gaditana|type=mRNA|length=2919bp|location=Sequence derived from alignment at CM002458.1:873670..876588+ (Nannochloropsis gaditana)
AGCCGAGAGACGTCCGGCGGCAAGGGCTGGCTTTTTCAGAGAGAGGGTGA
AAAGCATAGCTGTATAACTAGTAAGCGGGAGGCTGTGCGGTGGGCGGCGT
GAAGTCGTGGTGTGAGAGCTATGAATACAAAAGAGATGATACTGTCCGCA
GCGACAGGCAGCCGGAAGGAGAGCCGCTCTCCAAATGCGTGGTCCTATCA
CCCATTTGTCGAATGTTCAAAGAGGCACACAGATGAGCGCAAAATCCATT
GATTTAAGAAGGCACATCACTAAGCCAAGCATGTAAAGAGCAGTGGATAT
TTCGTGTCACCGTCACTGCAAccgccaacctcctccccctcctcagcGGA
TTGCTTCCAAGACGCCTGTCCGATAGTTGGATTTCAGACGTGGTCCAGCC
TGCCCAGCACTCAACTCAGCGACAGGTACGTTGGAGCAAGGATAGTGGGC
GATATATTGCGACAGAGGGATCTTAACCTTGAAGTCGTGCCGCGACATAG
TGAGACCAGTACAACCAATCTGGGTCCCGATACACGACGTGTATGTCCTA
TTTCCCCCACAAGATTATCGAGCCTCCATTCATTCATTTCTCAGTGATCT
TTTGCATGGCCCGTGATACGTAGTTACGTACGCCGTACGTTCGACGGACC
GTGTGTCGCATAAACGGTTTTGTTACCAGACTGAGCCGCATTCAGTACGT
TGTGTCTTAAGTTAGATATGTTGTTTTCTCTAATCTATCTTACCATAGTG
GTTGAGAGATTGACCTCAAACTATCCATTTCATTTGCCTCTGTCACGTTC
AGCAGCCTAAAAAGCTTCACGCTTGATGGAGTCTAGCACAGATCGTCAAT
TTCAGGCATCTTACGGCGTTTAAAAACCCGGTCGCTCGCTTGTGGTGTCT
GTATTTGTTCTCCAAAGCGAAATGCTTTTGGCAAAGGAAGCTATGTTGTG
AGGTATTTTAaggccttcatcctccccacaCAGCACTGCTGCTCTGCAAT
AAGCTTCTGCGGACATGTTCTGGTGGCTCTCAACAGCAGCTGAGCGCCTG
CAACGAAAAGCAAGAGCGAAACGCGCGGAATTCGAAGCCAAATGGGCACA
ACCTCTACCGCCTCTGGCGCCTGAGCTGGATGCGGCCAAGGAGACGAAAA
TTGCTTTGGAGTTATCGATCGAAGACCTCGTAGCACTCATGCAGGACGGC
ACTTTCTCTTCGCACGACGTGGTAAGCGTATTGGCCAAACGCGCAAGAGA
GTTTGGGGGACCGGCAGGGGTCAACGCCTTGACGGACGTGCTTTTCGAGG
AGGCGTTCGTCGAGGCCAGAAGAAAAGATCGCGACCGacaacgggggggg
ggcgagagtGACGCTGTGGGGGTGCTCGAAGGAATTCCTCTGTCCGTCAA
GGACCACATCGATGTCAAAGGCACCGATTCCACCACGGGGGCCGCCTGTC
GATGCTTCCGGCCCGCCAGCAAGGACGCCTTGGTGGTGGAACTATTGCGG
GACGCGGGGGCCATCGTCCTGTGCAAGACCAACGTGCCCCAATGCCTCAT
GCTTCCTGAAACCAGCAACAACATTTGGGGCGTCACGTCCTCACCCTGGA
ACCTCACACGCTCTGCGGggggcagcagcggcggcgagGCTGCCTTGGTG
GCGGTTCGAGGGAGCTTGGTAGGGATCGGAACGGACATCGGCGGCTCCTG
TCGGGGACCCGCCCATTTCAGCGGCTGCGTCGGATTTAAGCCGACGCCCG
CCCGGGTCtcggggaaagggatcgTCATGCCCTCGAAAAGCGGAAAGATG
GGCATGCAGGCGATCAGAGCGACGGCGGGGCCACTGGCCAaccgcgtgga
ggacgtggccttGGTATGTCAGGCCTGGTGGGTGAATAAGATGTGGGCTC
GTGACCCCTACGTGGTGCCCCTACCCTTCGACCACGCGGCCTACCGACGA
GGCGTGACCAAGGAAGCGCAGCaatgggagcgagggggggggggagagca
gactagggatggggggaaggggaggcaagaagaagcgagTTCGCCAGGGG
GGCGGAAAATCCGATTGGGCTGGTTCTTGAGCGACGACTTTTTTGAGCCT
TGCCGGGCAGGGAAACGCGCGGTTCGCGAAGCGAAGCAAGCTTTGGAGTC
GACAGGAAAGTACGAGCTAGTAGAGATGCGCTTGAGCACAGCAACCGATG
GCTGGGAGGCCGTGCGCCTTTATTACAACATCATGACGGCCGAGGGAGGC
CTGCGGAGTTACATCGACGCcctggaaggagaagcgatGATCCCGATGTA
TCGGAACATACGACTTGCCGCCTGCTTCCCCGATTTCTTGCGACCCCTGC
TCCACACCGCCTTGTACTTGACAGGAGAGAAACGGAGACGTTTCTTGGTC
AAAAATATGCGGCGTGATGGGCTGGCAACGCGGACCTACTGGCAGTACTG
CGAGGAGCTTCAGAACTATCAAGAGGCGTGGACTCGAATGATGCAAACGC
AGAAACTGGATGGGTTTTTATGTCCAAGCGTGGCTTTACCTGCTTTTCCT
CACGGATGGTCGTCGCATTTGGAAAGCTCGTGTTCTTACAATCTATTTTT
GAACCTCCTTCACTACCCTGCTGGAGTGATACCGGTCACTCAAGTGCGGG
CCGATGAAGCCGTCTATCCCATAAGCGATCTCCCCCGCATGCAGCGGGAT
TCTATCGCACGAGCCGCTGCGATAGCTATGCAAGGGAGCGAGGCCTTGCC
TGTGAGCGTGCAAGTCGCATTCCCACCTTTTCAGGATGAGATGTGCCTTC
ACGTCATGAAGGATTTACAGGACGCTGTTGGATTCACGGCTTTACCGCCT
TATGCGAAGCGATCCGTTTTCAATTAATAAAATTTGAACAAAGTACTTAG
CATTGAGCTTTCAAGTGAG back to topCoding sequence (CDS) from alignment at CM002458.1:873670..876588+ >rna2093 ID=rna2093|Name=rna2093|organism=Nannochloropsis gaditana|type=CDS|length=1863bp|location=Sequence derived from alignment at CM002458.1:873670..876588+ (Nannochloropsis gaditana)
ATGTTCTGGTGGCTCTCAACAGCAGCTGAGCGCCTGCAACGAAAAGCAAG
AGCGAAACGCGCGGAATTCGAAGCCAAATGGGCACAACCTCTACCGCCTC
TGGCGCCTGAGCTGGATGCGGCCAAGGAGACGAAAATTGCTTTGGAGTTA
TCGATCGAAGACCTCGTAGCACTCATGCAGGACGGCACTTTCTCTTCGCA
CGACGTGGTAAGCGTATTGGCCAAACGCGCAAGAGAGTTTGGGGGACCGG
CAGGGGTCAACGCCTTGACGGACGTGCTTTTCGAGGAGGCGTTCGTCGAG
GCCAGAAGAAAAGATCGCGACCGacaacggggggggggcgagagtGACGC
TGTGGGGGTGCTCGAAGGAATTCCTCTGTCCGTCAAGGACCACATCGATG
TCAAAGGCACCGATTCCACCACGGGGGCCGCCTGTCGATGCTTCCGGCCC
GCCAGCAAGGACGCCTTGGTGGTGGAACTATTGCGGGACGCGGGGGCCAT
CGTCCTGTGCAAGACCAACGTGCCCCAATGCCTCATGCTTCCTGAAACCA
GCAACAACATTTGGGGCGTCACGTCCTCACCCTGGAACCTCACACGCTCT
GCGGggggcagcagcggcggcgagGCTGCCTTGGTGGCGGTTCGAGGGAG
CTTGGTAGGGATCGGAACGGACATCGGCGGCTCCTGTCGGGGACCCGCCC
ATTTCAGCGGCTGCGTCGGATTTAAGCCGACGCCCGCCCGGGTCtcgggg
aaagggatcgTCATGCCCTCGAAAAGCGGAAAGATGGGCATGCAGGCGAT
CAGAGCGACGGCGGGGCCACTGGCCAaccgcgtggaggacgtggccttGG
TATGTCAGGCCTGGTGGGTGAATAAGATGTGGGCTCGTGACCCCTACGTG
GTGCCCCTACCCTTCGACCACGCGGCCTACCGACGAGGCGTGACCAAGGA
AGCGCAGCaatgggagcgagggggggggggagagcagactagggatgggg
ggaaggggaggcaagaagaagcgagTTCGCCAGGGGGGCGGAAAATCCGA
TTGGGCTGGTTCTTGAGCGACGACTTTTTTGAGCCTTGCCGGGCAGGGAA
ACGCGCGGTTCGCGAAGCGAAGCAAGCTTTGGAGTCGACAGGAAAGTACG
AGCTAGTAGAGATGCGCTTGAGCACAGCAACCGATGGCTGGGAGGCCGTG
CGCCTTTATTACAACATCATGACGGCCGAGGGAGGCCTGCGGAGTTACAT
CGACGCcctggaaggagaagcgatGATCCCGATGTATCGGAACATACGAC
TTGCCGCCTGCTTCCCCGATTTCTTGCGACCCCTGCTCCACACCGCCTTG
TACTTGACAGGAGAGAAACGGAGACGTTTCTTGGTCAAAAATATGCGGCG
TGATGGGCTGGCAACGCGGACCTACTGGCAGTACTGCGAGGAGCTTCAGA
ACTATCAAGAGGCGTGGACTCGAATGATGCAAACGCAGAAACTGGATGGG
TTTTTATGTCCAAGCGTGGCTTTACCTGCTTTTCCTCACGGATGGTCGTC
GCATTTGGAAAGCTCGTGTTCTTACAATCTATTTTTGAACCTCCTTCACT
ACCCTGCTGGAGTGATACCGGTCACTCAAGTGCGGGCCGATGAAGCCGTC
TATCCCATAAGCGATCTCCCCCGCATGCAGCGGGATTCTATCGCACGAGC
CGCTGCGATAGCTATGCAAGGGAGCGAGGCCTTGCCTGTGAGCGTGCAAG
TCGCATTCCCACCTTTTCAGGATGAGATGTGCCTTCACGTCATGAAGGAT
TTACAGGACGCTGTTGGATTCACGGCTTTACCGCCTTATGCGAAGCGATC
CGTTTTCAATTAA back to top
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