rna2087, rna2087 (mRNA) Nannochloropsis gaditana

Overview
Namerna2087
Unique Namerna2087
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1256
Alignment locationCM002458.1:858150..859327 +

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Properties
Property NameValue
Productphospholipid n-methyltransferase
Orig transcript idgnl|cribi|Naga_100009g73.646.mrna
Orig protein idgnl|cribi|Naga_100009g73.646
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:858150..859327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g73gene1997Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2087rna2087-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28603.1cds2079Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2087 ID=rna2087|Name=rna2087|organism=Nannochloropsis gaditana|type=mRNA|length=1256bp
TGAATCACCCACCTGCTTGCGTACCTGTACACAGCCAAGCTTTCTACACC
TCCGATTAGATGATTTCCCTCAATTTTCAGTTATGAGGTTTGCGTCCTTG
TCGAGCACTCGAGCGGACAGGAGGAGAGACTTCTAGTGCAGGCCATGGAG
GCTTCACTTTTGGAACAAGAGGCAATCAAGGCCCAACGCGACGAGGAGAT
CGAGAGTATCAAGCTCATCTACACTGACGACTTGGTGAATGTCCTAAACC
ACCCTCAGGACTGCGTGGTCGAGGTCAAGCTGGGCGAGGCAATTGACGGG
GAGACGTCGCGGACCGTCACCCTTACGGTGTACTTACCCGTCTCCTACCC
ATCTCCGGGAGCAGAGATGCCTTTCTTTGAAGTGCGCGGCGTGAACTGGT
CGAATCCTAAGCATGACCAAATCCACATATATGAGGGCATGCAGGAGGTT
TTCCGGCAACAGGCTGGGGAGGTCGTGCTCTTCTCCTGGTGCGAGTGGCT
AAAGGAGGAGCTCCATTTGCTGCCCATCACACACAGCACGGCCGCCGATG
AGCAGGTTGAAGAGCAAGAGACATCAGGAGAACGGGACAAGTGCGATCGT
GCGCTGGATGGTACTCGCAGCGATGACGGTGCACTCACTCCACAGTATGC
GGCGCGACAGCACGGGCTCGACTTGGTCCACGGGGCCCCGCTCACCGAGC
GGAGAAGTACTTTTCAAGCACACCTGGCGCGGATTACCTCGGAGCGGGAT
GCTCGCACGGTTCTTGAGTGTCTGAAACTTGATCGAAAAATTCAACGGGC
AACACACAACATGTACGCCTTCCGCGTTTTCGACGTGCAGAAGCAAGCCC
AAGTGAACGACAACGATGACGACGGGGAGAATGCTGCAGGTGGGAAGCTG
GCAGAGCTCCTAGCAGTGATGGGCGTAAACAACGTCATAGTCGTGGTGAG
CCGCTGGTGGGGAGGTCTGCTCTTGGGGCCATCGCGGTTCCGCGTGATAA
ACAACACGGCCCGACAGCTGCTGGAGCAATGCGGCGTGAGGGGGAGATCG
GGCGAGAAAGAAGGGGGAGGGGCGGGAGGCAAAGGGCTGTCCGCATCTGG
AAAGAGATGAGGCTTGACGGCTCTCTGTGCCCTTGGCTAGGGGGCGGAGA
CGGAAAGGTTTTGGAGCAGTCGGGACTGTGCGACGGCAGCCTGTTGGGGA
AGGAAACCCTCCTTTGGTCGATAATAGAATCGGTACCGACATCCTTACAT
TTGCAC
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protein sequence of rna2087

>rna2087-protein ID=rna2087-protein|Name=rna2087|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MQSSRSTCCNMGISLAFPVNEGLGLLLLALSTPHLLYFFTWTCTGAFTRI
AKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPPMKVASIPPLQVVV
GLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQY
VGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEHHF
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mRNA from alignment at CM002458.1:858150..859327+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2087 ID=rna2087|Name=rna2087|organism=Nannochloropsis gaditana|type=mRNA|length=1178bp|location=Sequence derived from alignment at CM002458.1:858150..859327+ (Nannochloropsis gaditana)
GGACAAAAAACAAGAAAAAAGCAGGCAAGCACACCAAAAGCTGACGTTTC TTTCTCTGCTCACGTGACGTGCAGAACTGTGGCAAATTGTGCTGCAGCGA GTATCCCAGCTCACTcccgcccatccctccctcttcttgatGCAAAGCAG TCGAAGCACGTGCTGCAACATGGGAATCTCTCTGGCATTTCCCGTCAACG AAGGTCTAGGACTCTTGCTCCTGGCCTTGTCGACGCCACACCTGCTGTAC TTCTTCACCTGGACATGCACGGGGGCATTCACTCGCATCGCAAAAGCGGT CGGAGTGGAGGCCTTCGCTCTTTTTTACAAGGTAGCTCCCGGAGACGAAG GGTTCGCTTGAAACATGAAAGAACTTTGAGCAGTTTCCTGAAGATTATAA ATTATGTGCGTCGCTCACCCGTTTTGACAAATATTGCATACAGTTGTCGG TACTCCTCAAATTTGTGCAACTCGGGGCCCTCGTTACGTGGGGGATGCAG GTAGGATTTACGAGTGAGGAGGCACTGCTGGACTGCTTGCTGTGCCGATC GAGTCTACTTCCCACATGCAGGCAGCACGGCTTCACACTCAGCTCAATTG TTTTTGCTATCACCACTCCCTTATCCGCTAGTATATGCCGCCGATGAAAG TCGCCAgtatccctccccttcaggtGGTGGTAGGGCTGGGAATGTTCGGA GCGGGCCAAATTTTGAACATGGGGGTCTACACGGCGCTGGGCAAAGAAGG GGTTTACTACGGAGTGCGTCTTGGGAAGCCTATTGCCTGGTATGAGGGCT TTCCTTTCACCGTGGTGCCCCACCCTCAGTACGTGGGGTGCGTGCTGTGC ATCTGGGGAGTAGTGGCTGTGCTTCTTAATCAAGCGAATATCGACGCCGG CCTCCTCACGATTGCTAGCGCATGGAGCACCTTCTATTGCGTGACGGGAT TGATTGAGCACCATTTCTAATACTTAATACCAAATCAGAGAAATTATTCA AAAAGTTCAACGAGATAAAATGTTCTACGACAAAGTGGGCAACTCACCTA GAATAGCTCGACCAAAGTCAACGAAATTGATGCAGGATGCAGGATGGACA ATCACAGTTCCATACTGGTATCCTTAGCAAAGCAGTGCAAGCGAAAAAAG GCGAAAGAAGCAAGTGTCCCGATTTGAG
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Coding sequence (CDS) from alignment at CM002458.1:858150..859327+

>rna2087 ID=rna2087|Name=rna2087|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at CM002458.1:858150..859327+ (Nannochloropsis gaditana)
atGCAAAGCAGTCGAAGCACGTGCTGCAACATGGGAATCTCTCTGGCATT
TCCCGTCAACGAAGGTCTAGGACTCTTGCTCCTGGCCTTGTCGACGCCAC
ACCTGCTGTACTTCTTCACCTGGACATGCACGGGGGCATTCACTCGCATC
GCAAAAGCGGTCGGAGTGGAGGCCTTCGCTCTTTTTTACAAGTTGTCGGT
ACTCCTCAAATTTGTGCAACTCGGGGCCCTCGTTACGTGGGGGATGCAGT
ATATGCCGCCGATGAAAGTCGCCAgtatccctccccttcaggtGGTGGTA
GGGCTGGGAATGTTCGGAGCGGGCCAAATTTTGAACATGGGGGTCTACAC
GGCGCTGGGCAAAGAAGGGGTTTACTACGGAGTGCGTCTTGGGAAGCCTA
TTGCCTGGTATGAGGGCTTTCCTTTCACCGTGGTGCCCCACCCTCAGTAC
GTGGGGTGCGTGCTGTGCATCTGGGGAGTAGTGGCTGTGCTTCTTAATCA
AGCGAATATCGACGCCGGCCTCCTCACGATTGCTAGCGCATGGAGCACCT
TCTATTGCGTGACGGGATTGATTGAGCACCATTTCTAAatGCAAAGCAGT
CGAAGCACGTGCTGCAACATGGGAATCTCTCTGGCATTTCCCGTCAACGA
AGGTCTAGGACTCTTGCTCCTGGCCTTGTCGACGCCACACCTGCTGTACT
TCTTCACCTGGACATGCACGGGGGCATTCACTCGCATCGCAAAAGCGGTC
GGAGTGGAGGCCTTCGCTCTTTTTTACAAGTTGTCGGTACTCCTCAAATT
TGTGCAACTCGGGGCCCTCGTTACGTGGGGGATGCAGTATATGCCGCCGA
TGAAAGTCGCCAgtatccctccccttcaggtGGTGGTAGGGCTGGGAATG
TTCGGAGCGGGCCAAATTTTGAACATGGGGGTCTACACGGCGCTGGGCAA
AGAAGGGGTTTACTACGGAGTGCGTCTTGGGAAGCCTATTGCCTGGTATG
AGGGCTTTCCTTTCACCGTGGTGCCCCACCCTCAGTACGTGGGGTGCGTG
CTGTGCATCTGGGGAGTAGTGGCTGTGCTTCTTAATCAAGCGAATATCGA
CGCCGGCCTCCTCACGATTGCTAGCGCATGGAGCACCTTCTATTGCGTGA
CGGGATTGATTGAGCACCATTTCTAAatGCAAAGCAGTCGAAGCACGTGC
TGCAACATGGGAATCTCTCTGGCATTTCCCGTCAACGAAGGTCTAGGACT
CTTGCTCCTGGCCTTGTCGACGCCACACCTGCTGTACTTCTTCACCTGGA
CATGCACGGGGGCATTCACTCGCATCGCAAAAGCGGTCGGAGTGGAGGCC
TTCGCTCTTTTTTACAAGTTGTCGGTACTCCTCAAATTTGTGCAACTCGG
GGCCCTCGTTACGTGGGGGATGCAGTATATGCCGCCGATGAAAGTCGCCA
gtatccctccccttcaggtGGTGGTAGGGCTGGGAATGTTCGGAGCGGGC
CAAATTTTGAACATGGGGGTCTACACGGCGCTGGGCAAAGAAGGGGTTTA
CTACGGAGTGCGTCTTGGGAAGCCTATTGCCTGGTATGAGGGCTTTCCTT
TCACCGTGGTGCCCCACCCTCAGTACGTGGGGTGCGTGCTGTGCATCTGG
GGAGTAGTGGCTGTGCTTCTTAATCAAGCGAATATCGACGCCGGCCTCCT
CACGATTGCTAGCGCATGGAGCACCTTCTATTGCGTGACGGGATTGATTG
AGCACCATTTCTAA
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Synonyms
Publications