EWM28603.1, cds2079 (CDS) Nannochloropsis gaditana

Overview
NameEWM28603.1
Unique Namecds2079
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:858289..858480 +
Alignment locationCM002458.1:858593..858649 +
Alignment locationCM002458.1:858781..859119 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28603.1
Productphospholipid n-methyltransferase
Orig transcript idgnl|cribi|Naga_100009g73.646.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:858289..858480 +
CM002458.1supercontigCM002458.1:858593..858649 +
CM002458.1supercontigCM002458.1:858781..859119 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006644phospholipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008170N-methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024960PEMT/MFAP
IPR007318Phopholipid_MeTrfase
Homology
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|585111021|gb|EWM28603.1| (phospholipid n-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 394.43 bits (1012), Expect = 7.982e-139
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MQSSRSTCCNMGISLAFPVNEGLGLLLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEHHF 195
            MQSSRSTCCNMGISLAFPVNEGLGLLLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEHHF
Sbjct:    1 MQSSRSTCCNMGISLAFPVNEGLGLLLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEHHF 195          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|760447647|ref|XP_011400892.1| (hypothetical protein F751_5940 [Auxenochlorella protothecoides] >gi|675355462|gb|KFM27902.1| hypothetical protein F751_5940 [Auxenochlorella protothecoides])

HSP 1 Score: 109.768 bits (273), Expect = 7.651e-27
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = 0
Query:   26 LLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPP-MKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEHHF 195
            ++  L+ PHLLY + W  +  +    K  G ++   F   + LLK +Q  +++ W     P  + + SI P    + L +  AGQ LN+G+Y A+G  GVYYG +LG  + W EGFPF VV HPQYVG VL +W   A +L  A   AGL  + + W+  Y +T + E  F
Sbjct:   14 VITTLALPHLLYAYIWFNSSTWL---KTFGKKSVQRFETAAWLLKVLQFSSVIYWYSVKKPEGVILGSISPFAAGISLVLLAAGQALNIGIYRAIGHAGVYYGFKLGHKVPWVEGFPFNVVSHPQYVGSVLSVWA--AAILVWAQGPAGLGLLVAYWTGLYVITAIQESCF 179          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|926787064|ref|XP_013902006.1| (hypothetical protein MNEG_4975 [Monoraphidium neglectum] >gi|761972603|gb|KIZ02987.1| hypothetical protein MNEG_4975 [Monoraphidium neglectum])

HSP 1 Score: 108.612 bits (270), Expect = 3.061e-26
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 0
Query:   29 ALSTPHLLYFFTWTCTGAFTRI-AKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEHH 194
            AL+ PH LY F W     + R+      V+AFA F  L  +L+F  +G  ++  +     + + ++  LQ +  L +FG GQ LN G++ A+G  GVYYG +LG  + W +G+PF  V HPQYVG VL +W +VA+L  Q    A LL +A  W+T Y +TGL E  
Sbjct:   30 ALAAPHFLYAFIWFKPDRWQRLFCGTKAVDAFAFFGALGKVLQFTVVGLWLSCQLPAGLCLDLRAVGLLQWLAALALFGYGQSLNAGIFRAIGHVGVYYGFKLGHEVPWVKGWPFDTVSHPQYVGSVLSVWAIVALLWGQVASPA-LLVLAGYWTTLYVITGLQEDR 195          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|552845905|ref|XP_005851476.1| (hypothetical protein CHLNCDRAFT_137846 [Chlorella variabilis] >gi|307111139|gb|EFN59374.1| hypothetical protein CHLNCDRAFT_137846 [Chlorella variabilis])

HSP 1 Score: 104.375 bits (259), Expect = 8.324e-25
Identity = 65/170 (38.24%), Postives = 89/170 (52.35%), Query Frame = 0
Query:   25 LLLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPP-MKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEH 193
            L+ L L+ PH LY + W     +    K   VE F     L+  LK VQ  ++  W +   P  + V ++PPL   +G+ +F  GQ LN+G++ A+G  GVYYG +LG  I W  GFPF VV HPQYVG V  I G   ++ +QA   AGL  +   W+  Y  T   E 
Sbjct:   11 LVCLGLALPHFLYAYIWFFPQQWMAAFKKRSVEVFE---TLAWALKGVQFLSVAYWWLLRKPAGVDVTAVPPLAWPLGIALFAFGQWLNVGIFQAIGHPGVYYGFKLGHTIPWASGFPFNVVSHPQYVGSVASILGAAVLVWSQA--PAGLGLLVCYWTLLYVATAFQED 175          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|1004134447|gb|KXZ42553.1| (hypothetical protein GPECTOR_136g636 [Gonium pectorale])

HSP 1 Score: 94.7449 bits (234), Expect = 6.800e-21
Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 0
Query:   26 LLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTW-------GMQYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEH 193
             L  ++ PHL+Y   W     +       G  +  LF  + +  K +Q   +V W       G+ +  P+ +      QV++   + G GQ LN+G Y ALG  GVYYG RLG+ + W +G+PF  + HPQYVG  + IWG +A+    A +      I   W+  Y ++G IE 
Sbjct:   29 FLFVIALPHLIYALVWLSPKVWW---GTFGKNSLPLFASVGIFGKVLQFSTMVLWLWSSQPTGLCFRQPLAL-----WQVLLAAALIGYGQALNLGTYRALGLAGVYYGCRLGRSVPWVKGWPFNAISHPQYVGSTMTIWGALALFHTAAPMPLSFF-IGIYWTCMYIMSGYIED 194          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|857971021|emb|CEP02882.1| (hypothetical protein PBRA_002849 [Plasmodiophora brassicae])

HSP 1 Score: 94.3597 bits (233), Expect = 7.534e-21
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 0
Query:   30 LSTPHLLYFFTWTCTGAFTR-IAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPPMKVASIP-PLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTV----VPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWST-FYCVTGLIEHH 194
             S PH  Y + W     F     K     A  +F  L+ + K +QL  ++ W + + P  K    P   + VV +     GQILN  +Y A+G +GVYYG+RLG+P+ WY GFPF +    +PHPQY+G  + I G+  +           L + +A+ST FY +T +IE +
Sbjct:   13 FSLPHWFYAYVWVRPDLFIAGTKKWAAAHAVTVFASLATMFKVLQLIVILWWAVLHPPVAKEFPSPLSFRFVVCVLAVILGQILNAAIYWAIGHDGVYYGIRLGRPVPWYTGFPFHLFGVKIPHPQYLGSSMTICGLAGLFYTSTT---TYLPVIAAFSTVFYVITAIIEEN 181          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|545365016|ref|XP_005647515.1| (hypothetical protein COCSUDRAFT_63364 [Coccomyxa subellipsoidea C-169] >gi|384249490|gb|EIE22971.1| hypothetical protein COCSUDRAFT_63364 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 90.1225 bits (222), Expect = 7.025e-20
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 0
Query:   69 LKFVQLGALVTW----GMQYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEH 193
            ++ +Q G++V W      +    + + ++   Q      +   GQ+LN+ VY  L   GVYYG +LGK +AW  GFPF  V HPQY+G VL +WGV ++L + +    GLL +A  W+  Y +T   E 
Sbjct:    1 MRLLQFGSIVAWYVVKSKEQGLKLDLLNVTWPQWTAFFALVFIGQVLNISVYNTLSTNGVYYGTKLGKKVAWVRGFPFNTVSHPQYLGAVLTVWGVASLLWDVS--PPGLLILAGYWTALYAMTAFWEQ 127          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|1149172202|ref|WP_077730056.1| (hypothetical protein [Methylocaldum sp. 14B])

HSP 1 Score: 88.5817 bits (218), Expect = 1.201e-18
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 0
Query:   28 LALSTPHLLYFFTWTCTGAFTRIAKAVGV----EAFALFYKLSVLLKFVQLGALVTWGM---QYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVL 164
            L LS   + Y + W     F  + K   +    E  ++  KL  + K +Q+G  + W M     + P+  +S+ P+ +  G+G+   GQ+ N GV+  LG+ GV+YG + G  I W   FPF+V+ HPQYVG +L IWG   V+
Sbjct:   11 LLLSIERITYLWIWHHPDTFKAVCKYPAIVRFGEPISVLEKLFYIFKILQIGIFLAWCMLLGNTLIPLPTSSLVPMSL--GIGLIVIGQVFNFGVFYRLGRSGVFYGNKFGYEIQWCNAFPFSVLSHPQYVGTLLSIWGFFLVM 152          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|1196470562|ref|WP_086134630.1| (hypothetical protein [Methylocaldum sp. SAD2])

HSP 1 Score: 87.4261 bits (215), Expect = 3.125e-18
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 0
Query:   28 LALSTPHLLYFFTWTCTGAFTRIAKAVGV----EAFALFYKLSVLLKFVQLGALVTWGM---QYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVL 164
            L LS   + Y + W     F  + K   +    E  +   KL  + K +Q+G  + W M     + P+  +S+ P+ +  G+G+   GQ+ N GV+  LG+ GV+YG + G  I W   FPF+V+ HPQYVG +L IWG   V+
Sbjct:   11 LLLSIERITYLWIWHHPDTFKAVCKYPAIVRFGEPISALEKLFYIFKILQIGIFLAWCMLLGNTLIPLPTSSLVPMSL--GIGLIVIGQVFNFGVFYRLGRSGVFYGNKFGYEIQWCNAFPFSVLNHPQYVGTLLSIWGFFLVM 152          
BLAST of EWM28603.1 vs. NCBI_GenBank
Match: gi|929771842|ref|XP_014160854.1| (hypothetical protein SARC_00903 [Sphaeroforma arctica JP610] >gi|906958847|gb|KNC86952.1| hypothetical protein SARC_00903 [Sphaeroforma arctica JP610])

HSP 1 Score: 86.2705 bits (212), Expect = 1.267e-17
Identity = 53/176 (30.11%), Postives = 81/176 (46.02%), Query Frame = 0
Query:   25 LLLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPP------MKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGL--LTIASAWSTFYCVTGLIE 192
            LL   LS PH++Y   W     F +  + +  E   +   +   LK  Q  A + W  + +        M    +P     +   +   GQ+LN   Y  L ++GVYYG +LGK I W  GFPF    HPQY+GCV  IWG   ++L   +    +  L+I + W+  Y  + ++E
Sbjct:   20 LLGAVLSLPHVVYRDIWQNPQPFIKKCEKIKKEPVKVMATIGYTLKTAQYLACLLWSYRTLSDENGNFVMSFQDLPRGVTALAFSLILFGQVLNFSTYKTLKQDGVYYGAKLGKNIPWVHGFPFNTFNHPQYLGCVCSIWGATLLVLCTVHFYRWMHVLSIGTWWTMLYLFSSIVE 195          
The following BLAST results are available for this feature:
BLAST of EWM28603.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111021|gb|EWM28603.1|7.982e-139100.00phospholipid n-methyltransferase [Nannochloropsis ... [more]
gi|760447647|ref|XP_011400892.1|7.651e-2737.43hypothetical protein F751_5940 [Auxenochlorella pr... [more]
gi|926787064|ref|XP_013902006.1|3.061e-2639.52hypothetical protein MNEG_4975 [Monoraphidium negl... [more]
gi|552845905|ref|XP_005851476.1|8.324e-2538.24hypothetical protein CHLNCDRAFT_137846 [Chlorella ... [more]
gi|1004134447|gb|KXZ42553.1|6.800e-2132.00hypothetical protein GPECTOR_136g636 [Gonium pecto... [more]
gi|857971021|emb|CEP02882.1|7.534e-2134.30hypothetical protein PBRA_002849 [Plasmodiophora b... [more]
gi|545365016|ref|XP_005647515.1|7.025e-2035.66hypothetical protein COCSUDRAFT_63364 [Coccomyxa s... [more]
gi|1149172202|ref|WP_077730056.1|1.201e-1834.03hypothetical protein [Methylocaldum sp. 14B][more]
gi|1196470562|ref|WP_086134630.1|3.125e-1834.03hypothetical protein [Methylocaldum sp. SAD2][more]
gi|929771842|ref|XP_014160854.1|1.267e-1730.11hypothetical protein SARC_00903 [Sphaeroforma arct... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2087rna2087Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications