rna208, rna208 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna208
Unique Name	rna208
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1451
Alignment location	CM002455.1:534797..536860 +

Link to JBrowse

Properties


Property Name	Value
Product	haloacid dehalogenase-like hydrolase domain containing 3
Orig transcript id	gnl\|cribi\|Naga_100013g7.9813.mrna
Orig protein id	gnl\|cribi\|Naga_100013g7.9813
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:534797..536860 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g7	gene199	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna208	rna208-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30525.1	cds208	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:534797..536860+
coding sequence from alignment at CM002455.1:534797..536860+

mRNA sequence

>rna208 ID=rna208|Name=rna208|organism=Nannochloropsis gaditana|type=mRNA|length=1451bp
TAAAGAGACTTTCTGACATGGCCCTCCTGCGATGCTCACGTTTTTGTTTC
TCGGTACAGCATGGTGTGGGACCAACGAGAGAGATATTGTTGGCTAGCTC
GTGAATATCACCGGCAATCTTTTGCTTGCTTTACAATGAAGTCTCCAAGC
TAGGGAGGTTGTTTGGTATGTCCTTTCTGGCTCACCCGCCATCTTCACGT
ATGTCGCTCTTTCTCTTCGTGATCTATCTGACCTGGTACGACATTGTCAA
GGTAGTAATCCTCACATAGCTGAAATTCATGCTTGCACTCATTTCGCACC
ATATTCTGCTCACTACAGAGACGTGGTAGCATAGCTTTACGCCTATTTTG
AAGAATGACGCTTTCCAAAGTCGCCGTTATGGTAGTAGCTGCAGCTTTTG
TCGGCTTGACCTCTGCTTTCGTCACGCCGAGTCTCAGCACCGCGTCCAGG
GCCACTACCGGCGTGGTGTCAAGATCTCACAGTACTCCATCAAGGACGAC
CATGATGGCGGGCGGCATGAGCGAATTCAACAAGAATCGAGCGGCTCGTA
AACCGGGCCCCCTGGACCTAGTGGTTGAGCTCCAGAAGCCGCTGGGCATT
GTGCTGGAAGAGGACGAGAAAGGCAACGTGTATGTGAAGGAGCTGTCCCC
CGCGGGAAACGCAATGCGGTCGGGCAAAGTGGAGAAAGGTGACCTGGTGA
CTATGATCAGTGCCACGTTTGGGGACGAATGCTGGAGCGCGCGGGGAGCG
GGACTGGGCATGATCATGCAGGCCATCAAAGTCCGTCAGGGGAACACGGT
CAAGATTGTCTTGGAGCGGTCCAAGGCGGCACCGAAGAAGAGCGTGTTCA
AGGCCCCCGCCCCCAAGGCGAAGCCCGCGCCCAAGAAGCCCGACGAGGCC
ACGCTCCTCAGGCAACTGGAGGACGAGGAGAAGGGAAAGAAGAAATTCTT
CGGCTTGTTTTAATCCGGTGTGGAAGCACGGCGACTGGAAGTGCCGAGGA
AGGCTCAAGGCATTCGGGCGTGGAGTAGTACTTAGAGCAGCCAGCGTCAA
GAGTAAGTTCTGACTTGTCTATGGACTGAAGTGCGAGAGTCTAGGATGCT
CGAATGCTTTTACTGTTGACCCCATCGACTGGCAGGTCTTGTCCTCGTTA
TTACTCTGTTTCCGAGATTGGAGCAGCTCATTGCGGGAAACCAGTATATA
AAAGTATCGTGACTGCGCCCGTGAGGTGCTTGATGGCTGGGGTTGGAGAC
TAGGGCGCTCGTCCAGTGCAACTTGAAAATGGTGCACACCTAGATAGGCA
GAGCGAAAGAAATAAACACGACGGAATCTCATTTCCGCGACAGTCACACA
CACCCGCCATTGCTATGTTGGCAGTTCAGAAATGCCGAACGACGACAGGG
TTTGGTGCCCGTGCTCTCAAACTACCAAAAATAATCAAGCCGCATCCGTG
C

protein sequence of rna208

>rna208-protein ID=rna208-protein|Name=rna208|organism=Nannochloropsis gaditana|type=polypeptide|length=389bp
MACTERDGRRMRRRVAGSGAVLLAYMVGISSAFILSPAKFSGSSTTTTRW
SNRRRCVVPNPSTSPTSLQASAFENLGMPPIRPRGSRDQKLEEEAEESTL
AGEAVEAPPVRPVPELITMNAFGLLIEPTDEVGLFFREVFMKHYDYKVRL
PRPERFTVAFDKAYDARRSEYPNFGAKAGMSAEEWWAPIFYKTFLDVGFP
KEDLDEVFVGVFEELYYESLTSEWAWETVDDVLPMMDKLQEWRMQGGPKL
GVICDYDERLITILENLDILHYFDVVVSSRESGAGKPDPRPFLLAMEKAG
VKDPKKVMHLGRNFDHDVVGAAAAGMDSMWVVMPSYDYLEPEQEARQVEF
TKIGDLEAVLTMFDKSDPDRLISTTDKNKNRQGHLRVQY

mRNA from alignment at CM002455.1:534797..536860+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna208 ID=rna208|Name=rna208|organism=Nannochloropsis gaditana|type=mRNA|length=2064bp|location=Sequence derived from alignment at CM002455.1:534797..536860+ (Nannochloropsis gaditana)
ACATCCTCTGTTTTACTTTCGCACTGCGAAAATCCTAACAATCTTTTGCT
GAATTTTTCGTGAGACTGACTCTACTGCCACTCATCTGTTGTAGGTGGGC
CTGGAGCGGAGCCTTCATTTCTGGCGCGGCCGGTATCATATCAACGgttg
ctgctcctccacccctcatCACCTATGGCGTGCACTGAAAGGGATGGTCG
AAGAATGAGAAGACGAGTCGCAGGAAGTGGTGCCGTACTTCTTGCATATA
TGGTGGTAAGTTACGATACTCTTATGAAGCATGGTTTGGATATGAAACGG
AAAGACGATATTTTTTGGAAGTGCTATTAAAGCTGCCCATATACTTGGGG
TGCGCCCCAGTAAGAAAGTGTTCAGCTTTAAAGGATGTGATGCGGAAGAT
AGTTTGCTCAGAAACTCACGTGCATGCCATACGTTGTGTCACGTTTGTAT
CTTTTTCGAAATGGATTCAAGTTAGCTCGATTTTAGATGGTCTAGAGTAG
GGAAAGAGATGCAAGGGTAATTACTATCCATTTGAAGGCAagacagaggg
agagcacCAGTTGTGACAAACATGGACAAAAATATCTTTGAAAATTGTAG
TAGCAATATTAAAAACTGTCTTGTTAAGGATGCTGAAACAATTCAGATCA
TGGTGTTGTATGATTAACCGCTTACGCCCATCTCCGCTTCATAATCTCCT
TCCAACTCTTCTTTCACAGGGCATCAGCTCGGCCTTCATCCTTTCCCCGG
CGAAATTCTCCGGCAGCAGTACCACTACTACTAGATGGAGCAATAGGAGA
AGATGCGTTGTCCCTaacccctccacgtccccgaCCTCTCTTCAGGCCTC
AGCCTTCGAGAATTTAGGCATGCCCCCCATTAGACCACGGGGTTCCAGAG
AccagaagctggaggaggaagcagaagagAGCACCTTGGCTGGAGAAGCT
GTGGAGGCTCCTCCTGTCCGGCCTGTCCCTGAGCTTATAACCATGAATGC
CTTCGGCCTCCTGATCGAGCCGACGGACGAGGTGGGTCTTTTTTTCCGTG
AGGTCTTTATGAAGCACTATGACTACAAGGTACGTCTGCCACGTCCCGAG
CGCTTCACTGTCGCATTTGACAAAGCGTACGATGCTCGTCGGTCGGAGTA
CCCAAACTTCGGCGCGAAAGCGGGCATGAGTGCGGAGGAATGGTGGGCCC
CGATCTTCTACAAGACCTTCCTGGATGTGGGCTTCCCCAAGGAGGACCTG
GACGAGGTATTCGTGGGCGTGTTTGAAGAGTTATACTATGAGTCTCTGAC
GAGTGAATGGGCCTGGGAGACCGTGGACGACGTCTTGCCGATGATGGACA
AGCTGCAGGAGTGGCGGATGCAGGGCGGGCCCAAGCTGGGCGTGATATGT
GATTACGACGAGCGCCTCATCACAATTTTGGAAAATTTGGACATATTGCA
TTACTTCGATGTTGTCGTCTCCTCGCGTGAGTCGGGTGCCGGTAAGCCTG
ATCCTCGTCCGTTCTTGCTGGCGATGGAGAAAGCAGGGGTGAAGGACCCT
AAAAAGGTGATGCACCTGGGGCGAAACTTTGACCACGACGTGGTAggggc
agcggcggcgggaaTGGATTCCATGTGGGTTGTGATGCCATCATACGACT
ACCTAGAGCCGGAGCAGGAGGCTCGGCAGGTGGAATTCACCAAAATTGGG
GACTTGGAGGCAGTATTGACCATGTTCGACAAGAGTGATCCCGATCGTCT
GATCAGCACCACGGACAAGAACAAAAACAGACAGGGACATCTGCGCGTGC
AGTACTAAAGAGATTTTTTAATCAGTCTGGAATGTTtgaagagaggagaa
atataaggaggaagagggagagtaTGGTCAGCGGGCTCTTTTCCGGTGAC
CCtgatgggaagaagggtgcATTGGAAGCGAGATTGCCAAATAGCACGGC
TACTTTGGTAAAAGAGGTATTGAACGGCAACAGGAATGTCGGTTTAACTT
TTTGACAACGAGCTACATAGAAAAGAAAGACCGGAAGAATCAGCAAACAG
GGACAGGTCATGCA

Coding sequence (CDS) from alignment at CM002455.1:534797..536860+

>rna208 ID=rna208|Name=rna208|organism=Nannochloropsis gaditana|type=CDS|length=2340bp|location=Sequence derived from alignment at CM002455.1:534797..536860+ (Nannochloropsis gaditana)
ATGGCGTGCACTGAAAGGGATGGTCGAAGAATGAGAAGACGAGTCGCAGG
AAGTGGTGCCGTACTTCTTGCATATATGGTGGGCATCAGCTCGGCCTTCA
TCCTTTCCCCGGCGAAATTCTCCGGCAGCAGTACCACTACTACTAGATGG
AGCAATAGGAGAAGATGCGTTGTCCCTaacccctccacgtccccgaCCTC
TCTTCAGGCCTCAGCCTTCGAGAATTTAGGCATGCCCCCCATTAGACCAC
GGGGTTCCAGAGAccagaagctggaggaggaagcagaagagAGCACCTTG
GCTGGAGAAGCTGTGGAGGCTCCTCCTGTCCGGCCTGTCCCTGAGCTTAT
AACCATGAATGCCTTCGGCCTCCTGATCGAGCCGACGGACGAGGTGGGTC
TTTTTTTCCGTGAGGTCTTTATGAAGCACTATGACTACAAGGTACGTCTG
CCACGTCCCGAGCGCTTCACTGTCGCATTTGACAAAGCGTACGATGCTCG
TCGGTCGGAGTACCCAAACTTCGGCGCGAAAGCGGGCATGAGTGCGGAGG
AATGGTGGGCCCCGATCTTCTACAAGACCTTCCTGGATGTGGGCTTCCCC
AAGGAGGACCTGGACGAGGTATTCGTGGGCGTGTTTGAAGAGTTATACTA
TGAGTCTCTGACGAGTGAATGGGCCTGGGAGACCGTGGACGACGTCTTGC
CGATGATGGACAAGCTGCAGGAGTGGCGGATGCAGGGCGGGCCCAAGCTG
GGCGTGATATGTGATTACGACGAGCGCCTCATCACAATTTTGGAAAATTT
GGACATATTGCATTACTTCGATGTTGTCGTCTCCTCGCGTGAGTCGGGTG
CCGGTAAGCCTGATCCTCGTCCGTTCTTGCTGGCGATGGAGAAAGCAGGG
GTGAAGGACCCTAAAAAGGTGATGCACCTGGGGCGAAACTTTGACCACGA
CGTGGTAggggcagcggcggcgggaaTGGATTCCATGTGGGTTGTGATGC
CATCATACGACTACCTAGAGCCGGAGCAGGAGGCTCGGCAGGTGGAATTC
ACCAAAATTGGGGACTTGGAGGCAGTATTGACCATGTTCGACAAGAGTGA
TCCCGATCGTCTGATCAGCACCACGGACAAGAACAAAAACAGACAGGGAC
ATCTGCGCGTGCAGTACTAAATGGCGTGCACTGAAAGGGATGGTCGAAGA
ATGAGAAGACGAGTCGCAGGAAGTGGTGCCGTACTTCTTGCATATATGGT
GGGCATCAGCTCGGCCTTCATCCTTTCCCCGGCGAAATTCTCCGGCAGCA
GTACCACTACTACTAGATGGAGCAATAGGAGAAGATGCGTTGTCCCTaac
ccctccacgtccccgaCCTCTCTTCAGGCCTCAGCCTTCGAGAATTTAGG
CATGCCCCCCATTAGACCACGGGGTTCCAGAGAccagaagctggaggagg
aagcagaagagAGCACCTTGGCTGGAGAAGCTGTGGAGGCTCCTCCTGTC
CGGCCTGTCCCTGAGCTTATAACCATGAATGCCTTCGGCCTCCTGATCGA
GCCGACGGACGAGGTGGGTCTTTTTTTCCGTGAGGTCTTTATGAAGCACT
ATGACTACAAGGTACGTCTGCCACGTCCCGAGCGCTTCACTGTCGCATTT
GACAAAGCGTACGATGCTCGTCGGTCGGAGTACCCAAACTTCGGCGCGAA
AGCGGGCATGAGTGCGGAGGAATGGTGGGCCCCGATCTTCTACAAGACCT
TCCTGGATGTGGGCTTCCCCAAGGAGGACCTGGACGAGGTATTCGTGGGC
GTGTTTGAAGAGTTATACTATGAGTCTCTGACGAGTGAATGGGCCTGGGA
GACCGTGGACGACGTCTTGCCGATGATGGACAAGCTGCAGGAGTGGCGGA
TGCAGGGCGGGCCCAAGCTGGGCGTGATATGTGATTACGACGAGCGCCTC
ATCACAATTTTGGAAAATTTGGACATATTGCATTACTTCGATGTTGTCGT
CTCCTCGCGTGAGTCGGGTGCCGGTAAGCCTGATCCTCGTCCGTTCTTGC
TGGCGATGGAGAAAGCAGGGGTGAAGGACCCTAAAAAGGTGATGCACCTG
GGGCGAAACTTTGACCACGACGTGGTAggggcagcggcggcgggaaTGGA
TTCCATGTGGGTTGTGATGCCATCATACGACTACCTAGAGCCGGAGCAGG
AGGCTCGGCAGGTGGAATTCACCAAAATTGGGGACTTGGAGGCAGTATTG
ACCATGTTCGACAAGAGTGATCCCGATCGTCTGATCAGCACCACGGACAA
GAACAAAAACAGACAGGGACATCTGCGCGTGCAGTACTAA

Synonyms

Publications