rna2077, rna2077 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2077
Unique Name	rna2077
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1329
Alignment location	CM002458.1:830893..833456 -

Link to JBrowse

Properties


Property Name	Value
Product	Membrane insertion protein, OxaA/YidC
Orig transcript id	gnl\|cribi\|Naga_100009g85.618.mrna
Orig protein id	gnl\|cribi\|Naga_100009g85.618
Gene	Alb3
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:830893..833456 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Alb3	gene1987	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28575.1	cds2069	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2077	rna2077-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:830893..833456-
coding sequence from alignment at CM002458.1:830893..833456-

mRNA sequence

>rna2077 ID=rna2077|Name=rna2077|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp
ATGATGGCTGGTGCAAAGCCAAGGCAGCCAGTCGATATGTTAATGATCGG
TACAGGAGAGTATACAACTGGTTACGTGCATGGCGAGGCCTCCGACTCGG
ACAAAAGTGCGGGCGTCGTAGCCTTGACCATGTTCGACCTCCGGCGCCGA
GGCAAAATAGGACGCTTAGGTTTGTGCGGCACAAATGGAAAGAAGTTTCC
AGGTATCCGTGCCCATATGGATAAGGCGATTGGCCAGACGTACAAGGGCT
TGGACATGACCATGGACACGTTTCCCACCGACGGTGCCGTGGATCCCCAG
GCTTACATAGCGGCCTTGGAAAAGTTCAAACCTGGCGATGCTGCGACAAT
ATTCACTCCTGACGACACGCATTTTGACATCGCCCTGGCTTGTGTAAAGC
GGGGTCTGCATGTGCTCGTGACGAAGCCTGTGGTCAAAACTTTAGCGGAG
CACCGCGCCTTGAAGGACGCCGCGGAGGCCAGTGGGGTGCTCGTCATGGT
CGAGGTGCACAAGCGCTTCGACCCTATCTACCTCGATGCCAAGGACAAAA
TCCAAGCCCTGGGTCCCTTCTCCTACATGTACAGCTACATGAGCCAGCCC
AAGCACCAGCTCGACACTTTCCGGGCGTGGGCCGGGAAAGGCAGCGACAT
ATCGTACTACCTGAACTCCCACCACACCGACTTCCACGAGTGGGCCATGC
AAGGCCGGTCGCGGCCCGTCCGAGTCTCCGCCTTGGCCTCCACAGGCGTC
GCCACCTGTCAGTACCAGATGGACACGGAGGACACCATCACCCTGTCTGT
CCAATGGCAGAACCGCGGGCCCTCGCCCAGCCTGGGCACGGGCCTCTACA
CGTCCTCCTGGGTGGCGCCCAAGTCCGACGTGCACTCCCAGCAGCGATTC
TTCTACATGGGTCACGGGGGAGAGGTGAACGTGGATCAGGCCCACCGGGG
GTATACGCTGGCCAGCGACGAGCTCGGGGGCGGGGGCTTCAAGAGTGTGA
ACCCGCTGTTTATGAAGTACACCCCGACCGACGGGCGCTTTGCGGGGCAG
CGTGGGTACGGATACCTTAGCTTCGAGGCCTTTGTGGACGCGGTAGTGGA
CATCCAAAGTGGGAAGGCCTCTGTGGGGGACTTTGACGCCGCCTTGGCTA
CAATTGGCACCACCGCCCTGACCACCGCCATCCTGGAGGCCGGCCGACGC
TCCCTGGACGCCGGGGGGCGCCCCATGGAAATCGTCTACGGGGAGGAGGC
AGACAGAACGTGGAGTGCGCCCGAAGGAGGGGAGGAAAACCATCCTTTTC
CCATCGATATTCGACCGGTAGAGTTTTGA

protein sequence of rna2077

>rna2077-protein ID=rna2077-protein|Name=rna2077|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MPQPFFWSCREQCCDPCLQHSHRSELSYLFDFFHSNRMVMRTHQREMWRQ
QQCLGRRLGSCIFCLLMASLLFTSEVVTAFVPVATRRPDLLHVSRPPFPS
RATPGTRALRMVLQPHDVVTHLDPAWLSHVFQGVADAAVTSLDATNAAVD
ATTDAAAKEPGFFDKFVNTVMGAIEGVHSELVSLGVPGAYGLAIILFTAG
VKLALLPVTYKQMESAQRMQALAPKAKELKDKYGKNKALLNQLTAKLYED
AEVNPLAGCLPALAQIPIFIALYRSLINLAGNSDFNEPFLWLPSLAGPLY
GQARGTDWLFKNWVDGVPALGWHDTIAFLTIPVILILTQSISQRLLTPPS
DDPKTAQTQRVLKYLPIMVGYFSLSVPSGLGVYWITNNLISTAISISIKE
KFAKQPIVIDVDVDPEDLGYDPSTVAMGFEEMMAEATRNALPSEQPKRDR
PTPSSLLKASESVVAEEGGKRDEEAGRVGEEREKAGVEA

mRNA from alignment at CM002458.1:830893..833456-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2077 ID=rna2077|Name=rna2077|organism=Nannochloropsis gaditana|type=mRNA|length=2564bp|location=Sequence derived from alignment at CM002458.1:830893..833456- (Nannochloropsis gaditana)
TGAGAGCCCGACACGGATACCGGGCACCGCAAAGTCAACTTGCCGTGCTT
TTGATGCCGCTCGCCTTGCGCCTTACGTCGTTTATGGATTTTGAAGGACG
GAAGCTATAGTTTCTCGCAGAGCTGTTCAGAATCGAGAGGACAATTAAAT
GCCCCAACCCTTTTTTTGGTCTTGCCGCGAGCAGTGCTGTGATCCGTGCC
TGCAACATTCACATCGGAGCGAACTCTCATATTTGTTCGATTTTTTCCAT
TCAAACAGGATGGTCATGCGGACGCATCAGCGTGAGATGTGGCGTCAGCA
GCAATGTCTGGGTAGAAGACTAGGGTCATGTATATTCTGTCTCCTGATGG
CATCCCTTTTGTTTACTTCCGAGGTGGTCACAGCATTTGTGCCCGTCGCC
ACGCGTCGGCCCGACCTCCTCCACGTCTCTCGCCCCCCATTTCCTTCGAG
AGCTACGCCAGGTACCAGAGCTTTGCGCATGGTTTTACAGCCGCACGATG
TGGTGACGCACCTGGACCCAGCGTGGCTTTCCCACGTCTTTCAGGGCGTG
GCAGATGCGGCCGTGACTTCTTTGGATGCGACAAATGCCGCGGTGGACGC
CACCACCGATGCCGCCGCGAAGGAGCCGGGCTTCTTCGATAAATTCGTGA
ACACGGTCATGGGCGCGATCGAGGGTGTGCACAGTGAACTGGTGTCGCTC
GGCGTCCCTGGCGCCTACGGCTTGGCCATCATATTGTTCACCGCGGGCGT
CAAACTGGCCCTGCTTCCCGTCACCTACAAGCAGATGGAGTCAGCTCAGC
GTATGCAGGCCCTAGCGCCCAAGGCGAAGGAGCTCAAGGACAAGTACGGG
AAGAACAAGGCGCTCCTGAACCAGCTGACCGCCAAGCTCTACGAGGACGC
GGAGGTGAACCCTCTCGCCGGCTGCCTTCCCGCCCTCGCCCAAATTCCCA
TTTTCATTGCCCTCTACCGCTCCCTGATCAACCTTGCGGGGAACAGCGAC
TTCAACGAGCCCTTTCTCTGGCTGCCGAGTCTGGCCGGGCCTCTCTACGG
CCAAGCCCGAGGCACGGACTGGCTCTTCAAAAACTGGGTGGACGGCGTCC
CGGCCCTGGGCTGGCACGACACGATCGCCTTCCTCACCATCCCCGTCATA
CTGATCCTCACGCAGTCTATCTCCCAACGACTGCTCACCCCGCCCAGCGA
CGACCCCAAGACCGCGCAGACCCAGCGCGTCCTCAAATATCTGCCCATCA
TGGTCGGGTACTTCTCTCTGAGCGTGCCCTCCGGCCTGGGTGTCTACTGG
ATCACCAACAATTTGATCTCCACGGCCATCTCGATCAGCATCAAGGAGAA
GTTCGCCAAGCAGCCGATCGTGATCGACGTGGATGTGGACCCGGAGGACT
TGGGCTACGACCCCTCCACGGTGGCCATGGGCTTCGAAGAGATGATGGCG
GAGGCGACGCGCAACGCGCTTCCAAGCGAGCAGCCCAAGCGGGATCGACC
GACGCCATCCTCCCTTTTGAAAGCGTCAGAGAGTGTCGTGGCTGAGGAGG
GGGGGAAGAGGGACGAGGAGGCCGGCCGCGTGGGGGAGGAGAGAGAAAAA
GCGGGCGTGGAGGCCTGAGGCGAGAGAGGATGGCCACGGAATTGGACCGG
ACTGCGCGGGGATTGGCGTGGTGCTTGTATTTTAATGGGGAAGGGAAAGG
AGGTGAATATTGGGGGGCGGGGCGGAGTTTGACCCGAGTCTGGCTTCAAA
GAGAGGAACGGCAGGCTTCACAGCTTTCGGGCAGCATACGCGGGAATGTG
GGAGGAGAGATGCCATTTCGGATGGAAAACAACCGTAAAACGAGAGACTT
TTGTCAAAATGTGCTTGAGTGTTGAGCATACTGTTCAGCCGCTGTCTGCG
CTATTTCTGTTCCTTGCCTCGAGCGCCCTGTTCGGAGAAGGCCCTCCCCC
TCCACACCAACAGGCCGACCATGGCATGCTCAAAACTCTACCGGTCGAAT
ATCGATGGGAAAAGGATGGTTTTCCTCCCCTCCTTCGGGCGCACTCCACG
TTCTGTCTGCCTCCTCCCCGTAGACGATTTCCATGGGGCGCCCCCCGGCG
TCCAGGGAGCGTCGGCCGGCCTCCAGGATGGCGGTGGTCAGGGCGGTGGT
GCCAATTGTAGCCAAGGCGGCGTCAAAGTCCCCCACAGAGGCCTTCCCAC
TTTGGATGTCCACTACCGCGTCCACAAAGGCCTCGAAGCTAAGGTATCCG
TACCCACGCTGCCCCGCAAAGCGCCCGTCGGTCGGGGTGTACTTCATAAA
CAGCGGGTTCACACTCTTGAAGCCCCCGCCCCCGAGCTCGTCGCTGGCCA
GCGTATACCCCCGGTGGGCCTGATCCACGTTCACCTCTCCCCCGTGACCC
ATGTAGAAGAATCGCTGCTGGGAGTGCACGTCGGACTTGGGCGCCACCCA
GGAGGACGTGTAGAGGCCCGTGCCCAGGCTGGGCGAGGGCCCGCGGTTCT
GCCATTGGACAGACAGGGTGATGGTGTCCTCCGTGTCCATCTGGTACTGA
CAGGTGGCGACGCC

Coding sequence (CDS) from alignment at CM002458.1:830893..833456-

>rna2077 ID=rna2077|Name=rna2077|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at CM002458.1:830893..833456- (Nannochloropsis gaditana)
ATGCCCCAACCCTTTTTTTGGTCTTGCCGCGAGCAGTGCTGTGATCCGTG
CCTGCAACATTCACATCGGAGCGAACTCTCATATTTGTTCGATTTTTTCC
ATTCAAACAGGATGGTCATGCGGACGCATCAGCGTGAGATGTGGCGTCAG
CAGCAATGTCTGGGTAGAAGACTAGGGTCATGTATATTCTGTCTCCTGAT
GGCATCCCTTTTGTTTACTTCCGAGGTGGTCACAGCATTTGTGCCCGTCG
CCACGCGTCGGCCCGACCTCCTCCACGTCTCTCGCCCCCCATTTCCTTCG
AGAGCTACGCCAGGTACCAGAGCTTTGCGCATGGTTTTACAGCCGCACGA
TGTGGTGACGCACCTGGACCCAGCGTGGCTTTCCCACGTCTTTCAGGGCG
TGGCAGATGCGGCCGTGACTTCTTTGGATGCGACAAATGCCGCGGTGGAC
GCCACCACCGATGCCGCCGCGAAGGAGCCGGGCTTCTTCGATAAATTCGT
GAACACGGTCATGGGCGCGATCGAGGGTGTGCACAGTGAACTGGTGTCGC
TCGGCGTCCCTGGCGCCTACGGCTTGGCCATCATATTGTTCACCGCGGGC
GTCAAACTGGCCCTGCTTCCCGTCACCTACAAGCAGATGGAGTCAGCTCA
GCGTATGCAGGCCCTAGCGCCCAAGGCGAAGGAGCTCAAGGACAAGTACG
GGAAGAACAAGGCGCTCCTGAACCAGCTGACCGCCAAGCTCTACGAGGAC
GCGGAGGTGAACCCTCTCGCCGGCTGCCTTCCCGCCCTCGCCCAAATTCC
CATTTTCATTGCCCTCTACCGCTCCCTGATCAACCTTGCGGGGAACAGCG
ACTTCAACGAGCCCTTTCTCTGGCTGCCGAGTCTGGCCGGGCCTCTCTAC
GGCCAAGCCCGAGGCACGGACTGGCTCTTCAAAAACTGGGTGGACGGCGT
CCCGGCCCTGGGCTGGCACGACACGATCGCCTTCCTCACCATCCCCGTCA
TACTGATCCTCACGCAGTCTATCTCCCAACGACTGCTCACCCCGCCCAGC
GACGACCCCAAGACCGCGCAGACCCAGCGCGTCCTCAAATATCTGCCCAT
CATGGTCGGGTACTTCTCTCTGAGCGTGCCCTCCGGCCTGGGTGTCTACT
GGATCACCAACAATTTGATCTCCACGGCCATCTCGATCAGCATCAAGGAG
AAGTTCGCCAAGCAGCCGATCGTGATCGACGTGGATGTGGACCCGGAGGA
CTTGGGCTACGACCCCTCCACGGTGGCCATGGGCTTCGAAGAGATGATGG
CGGAGGCGACGCGCAACGCGCTTCCAAGCGAGCAGCCCAAGCGGGATCGA
CCGACGCCATCCTCCCTTTTGAAAGCGTCAGAGAGTGTCGTGGCTGAGGA
GGGGGGGAAGAGGGACGAGGAGGCCGGCCGCGTGGGGGAGGAGAGAGAAA
AAGCGGGCGTGGAGGCCTGA

Synonyms

Publications