rna2076, rna2076 (mRNA) Nannochloropsis gaditana

Overview
Namerna2076
Unique Namerna2076
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length579
Alignment locationCM002458.1:829953..831477 +

Link to JBrowse

Properties
Property NameValue
ProductOxidoreductase
Orig transcript idgnl|cribi|Naga_100009g86.610.mrna
Orig protein idgnl|cribi|Naga_100009g86.610
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:829953..831477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g86gene1986Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2076rna2076-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28567.1cds2068Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2076 ID=rna2076|Name=rna2076|organism=Nannochloropsis gaditana|type=mRNA|length=579bp
ATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGT
GGAGCCCAGTGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGG
AGGGTATCCCCCCTGATCAGCAGCGCCTCATTTTTGCGGGGAAGCAGCTG
GAGGACGGGCGCACGTTGTCTGACTACAACATTCAGAAAGAGTCTACCCT
ACATTTGGTCCTGCGATTGCGTGGCGGTGTCTACGATCCCTCCCTCGCTG
CGCTGGCCAAGACTTTCAACTGCGAGAAGATGATCTGCCGCAAGTGCTAC
GCCCGCCTGCCCCCCCGCGCCAAAAATTGCCGGAAGAAGAAGTGCGGGCA
CACCAATCACCTGCGCATTAAGAAGAAGCTCAAGCGGGTTTTCGCGGCTG
AGGCACGCGTAACGGTTCAAATAGAGACAGGCGGGGGGCGAGGCGCGACT
ATGAGTGAAAGAGGGACTGAGGGGCTAAAGCATGGGGAGGCAAGGAGGTG
TCAACTTGCTCACGTACTGTGTATGTATACCCGCTCAGTTGTCCGCCCAT
TCCTTGGTGTGAGTGCCTTGGTGGCCTAG
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protein sequence of rna2076

>rna2076-protein ID=rna2076-protein|Name=rna2076|organism=Nannochloropsis gaditana|type=polypeptide|length=442bp
MMAGAKPRQPVDMLMIGTGEYTTGYVHGEASDSDKSAGVVALTMFDLRRR
GKIGRLGLCGTNGKKFPGIRAHMDKAIGQTYKGLDMTMDTFPTDGAVDPQ
AYIAALEKFKPGDAATIFTPDDTHFDIALACVKRGLHVLVTKPVVKTLAE
HRALKDAAEASGVLVMVEVHKRFDPIYLDAKDKIQALGPFSYMYSYMSQP
KHQLDTFRAWAGKGSDISYYLNSHHTDFHEWAMQGRSRPVRVSALASTGV
ATCQYQMDTEDTITLSVQWQNRGPSPSLGTGLYTSSWVAPKSDVHSQQRF
FYMGHGGEVNVDQAHRGYTLASDELGGGGFKSVNPLFMKYTPTDGRFAGQ
RGYGYLSFEAFVDAVVDIQSGKASVGDFDAALATIGTTALTTAILEAGRR
SLDAGGRPMEIVYGEEADRTWSAPEGGEENHPFPIDIRPVEF
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mRNA from alignment at CM002458.1:829953..831477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2076 ID=rna2076|Name=rna2076|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp|location=Sequence derived from alignment at CM002458.1:829953..831477+ (Nannochloropsis gaditana)
ATGATGGCTGGTGCAAAGCCAAGGCAGCCAGTCGATATGTTAATGATCGG
GTACGTTTAAAGGCGTGGGCAAGGTTATTTAACGCTGGTAGCATCGTAGA
GTTTTTAACGCAACTGAAGATTTCATGTCTGACTTGGAGATACGGTCGGG
GCAGCAGCTTAATACCCGCATATGGGTCAATACAGGGTCGGTTACGGCAC
GTTTCTCCTCTAATCTTCTTCTCATCTCTTGCCCATCCCTGGACAGTACA
GGAGAGTATACAACTGGTTACGTGCATGGCGAGGCCTCCGACTCGGACAA
AAGTGCGGGCGTCGTAGCCTTGACCATGTTCGACCTCCGGCGCCGAGGCA
AAATAGGACGCTTAGGTTTGTGCGGCACAAATGGAAAGAAGTTTCCAGGT
ATCCGTGCCCATATGGATAAGGCGATTGGCCAGACGTACAAGGGCTTGGA
CATGACCATGGACACGTTTCCCACCGACGGTGCCGTGGATCCCCAGGCTT
ACATAGCGGCCTTGGAAAAGTTCAAACCTGGCGATGCTGCGACAATATTC
ACTCCTGACGACACGCATTTTGACATCGCCCTGGCTTGTGTAAAGCGGGG
TCTGCATGTGCTCGTGACGAAGCCTGTGGTCAAAACTTTAGCGGAGCACC
GCGCCTTGAAGGACGCCGCGGAGGCCAGTGGGGTGCTCGTCATGGTCGAG
GTGCACAAGCGCTTCGACCCTATCTACCTCGATGCCAAGGACAAAATCCA
AGCCCTGGGTCCCTTCTCCTACATGTACAGCTACATGAGCCAGCCCAAGC
ACCAGCTCGACACTTTCCGGGCGTGGGCCGGGAAAGGCAGCGACATATCG
TACTACCTGAACTCCCACCACACCGACTTCCACGAGTGGGCCATGCAAGG
CCGGTCGCGGCCCGTCCGAGtctccgccttggcctccacaGGCGTCGCCA
CCTGTCAGTACCAGATGGACACGGAGGACACCATCACCCTGTCTGTCCAA
TGGCAGAACCGCGGGCCCTCGCCCAGCCTGGGCACGGGCCTCTACACGTC
CTCCTGGGTGGCGCCCAAGTCCGACGTGCACTCCCAGCAGCGATTCTTCT
ACATGGGTCACGGGGGAGAGGTGAACGTGGATCAGGCCCACCGGGGGTAT
ACGCTGGCCAGCGACGAGctcgggggcgggggcttcAAGAGTGTGAACCC
GCTGTTTATGAAGTACACCCCGACCGACGGGCGCTTTGCGGGGCAGCGTG
GGTACGGATACCTTAGCTTCGAGGCCTTTGTGGACGCGGTAGTGGACATC
CAAAGTGGGAAGGCCTCTGTGGGGGACTTTGACGCCGCCTTGGCTACAAT
TGGCACCACCGCCCTGACCACCGCCATCCTGGAGGCCGGCCGACGCTCCC
TGGACGCCGGGGGGCGCCCCATGGAAATCGTctacggggaggaggcagac
agAACGTGGAGTGCgcccgaaggaggggaggaaaaccATCCTTTTCCCAT
CGATATTCGACCGGTAGAGTTTTGA
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Coding sequence (CDS) from alignment at CM002458.1:829953..831477+

>rna2076 ID=rna2076|Name=rna2076|organism=Nannochloropsis gaditana|type=CDS|length=2658bp|location=Sequence derived from alignment at CM002458.1:829953..831477+ (Nannochloropsis gaditana)
ATGATGGCTGGTGCAAAGCCAAGGCAGCCAGTCGATATGTTAATGATCGG
TACAGGAGAGTATACAACTGGTTACGTGCATGGCGAGGCCTCCGACTCGG
ACAAAAGTGCGGGCGTCGTAGCCTTGACCATGTTCGACCTCCGGCGCCGA
GGCAAAATAGGACGCTTAGGTTTGTGCGGCACAAATGGAAAGAAGTTTCC
AGGTATCCGTGCCCATATGGATAAGGCGATTGGCCAGACGTACAAGGGCT
TGGACATGACCATGGACACGTTTCCCACCGACGGTGCCGTGGATCCCCAG
GCTTACATAGCGGCCTTGGAAAAGTTCAAACCTGGCGATGCTGCGACAAT
ATTCACTCCTGACGACACGCATTTTGACATCGCCCTGGCTTGTGTAAAGC
GGGGTCTGCATGTGCTCGTGACGAAGCCTGTGGTCAAAACTTTAGCGGAG
CACCGCGCCTTGAAGGACGCCGCGGAGGCCAGTGGGGTGCTCGTCATGGT
CGAGGTGCACAAGCGCTTCGACCCTATCTACCTCGATGCCAAGGACAAAA
TCCAAGCCCTGGGTCCCTTCTCCTACATGTACAGCTACATGAGCCAGCCC
AAGCACCAGCTCGACACTTTCCGGGCGTGGGCCGGGAAAGGCAGCGACAT
ATCGTACTACCTGAACTCCCACCACACCGACTTCCACGAGTGGGCCATGC
AAGGCCGGTCGCGGCCCGTCCGAGtctccgccttggcctccacaGGCGTC
GCCACCTGTCAGTACCAGATGGACACGGAGGACACCATCACCCTGTCTGT
CCAATGGCAGAACCGCGGGCCCTCGCCCAGCCTGGGCACGGGCCTCTACA
CGTCCTCCTGGGTGGCGCCCAAGTCCGACGTGCACTCCCAGCAGCGATTC
TTCTACATGGGTCACGGGGGAGAGGTGAACGTGGATCAGGCCCACCGGGG
GTATACGCTGGCCAGCGACGAGctcgggggcgggggcttcAAGAGTGTGA
ACCCGCTGTTTATGAAGTACACCCCGACCGACGGGCGCTTTGCGGGGCAG
CGTGGGTACGGATACCTTAGCTTCGAGGCCTTTGTGGACGCGGTAGTGGA
CATCCAAAGTGGGAAGGCCTCTGTGGGGGACTTTGACGCCGCCTTGGCTA
CAATTGGCACCACCGCCCTGACCACCGCCATCCTGGAGGCCGGCCGACGC
TCCCTGGACGCCGGGGGGCGCCCCATGGAAATCGTctacggggaggaggc
agacagAACGTGGAGTGCgcccgaaggaggggaggaaaaccATCCTTTTC
CCATCGATATTCGACCGGTAGAGTTTTGAATGATGGCTGGTGCAAAGCCA
AGGCAGCCAGTCGATATGTTAATGATCGGTACAGGAGAGTATACAACTGG
TTACGTGCATGGCGAGGCCTCCGACTCGGACAAAAGTGCGGGCGTCGTAG
CCTTGACCATGTTCGACCTCCGGCGCCGAGGCAAAATAGGACGCTTAGGT
TTGTGCGGCACAAATGGAAAGAAGTTTCCAGGTATCCGTGCCCATATGGA
TAAGGCGATTGGCCAGACGTACAAGGGCTTGGACATGACCATGGACACGT
TTCCCACCGACGGTGCCGTGGATCCCCAGGCTTACATAGCGGCCTTGGAA
AAGTTCAAACCTGGCGATGCTGCGACAATATTCACTCCTGACGACACGCA
TTTTGACATCGCCCTGGCTTGTGTAAAGCGGGGTCTGCATGTGCTCGTGA
CGAAGCCTGTGGTCAAAACTTTAGCGGAGCACCGCGCCTTGAAGGACGCC
GCGGAGGCCAGTGGGGTGCTCGTCATGGTCGAGGTGCACAAGCGCTTCGA
CCCTATCTACCTCGATGCCAAGGACAAAATCCAAGCCCTGGGTCCCTTCT
CCTACATGTACAGCTACATGAGCCAGCCCAAGCACCAGCTCGACACTTTC
CGGGCGTGGGCCGGGAAAGGCAGCGACATATCGTACTACCTGAACTCCCA
CCACACCGACTTCCACGAGTGGGCCATGCAAGGCCGGTCGCGGCCCGTCC
GAGtctccgccttggcctccacaGGCGTCGCCACCTGTCAGTACCAGATG
GACACGGAGGACACCATCACCCTGTCTGTCCAATGGCAGAACCGCGGGCC
CTCGCCCAGCCTGGGCACGGGCCTCTACACGTCCTCCTGGGTGGCGCCCA
AGTCCGACGTGCACTCCCAGCAGCGATTCTTCTACATGGGTCACGGGGGA
GAGGTGAACGTGGATCAGGCCCACCGGGGGTATACGCTGGCCAGCGACGA
GctcgggggcgggggcttcAAGAGTGTGAACCCGCTGTTTATGAAGTACA
CCCCGACCGACGGGCGCTTTGCGGGGCAGCGTGGGTACGGATACCTTAGC
TTCGAGGCCTTTGTGGACGCGGTAGTGGACATCCAAAGTGGGAAGGCCTC
TGTGGGGGACTTTGACGCCGCCTTGGCTACAATTGGCACCACCGCCCTGA
CCACCGCCATCCTGGAGGCCGGCCGACGCTCCCTGGACGCCGGGGGGCGC
CCCATGGAAATCGTctacggggaggaggcagacagAACGTGGAGTGCgcc
cgaaggaggggaggaaaaccATCCTTTTCCCATCGATATTCGACCGGTAG
AGTTTTGA
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Synonyms
Publications