rna2074, rna2074 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2074
Unique Name	rna2074
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2637
Alignment location	CM002458.1:827601..828762 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF4033
Orig transcript id	gnl\|cribi\|Naga_100009g88.658.mrna
Orig protein id	gnl\|cribi\|Naga_100009g88.658
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:827601..828762 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g88	gene1984	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2074	rna2074-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28615.1	cds2066	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:827601..828762+
coding sequence from alignment at CM002458.1:827601..828762+

mRNA sequence

>rna2074 ID=rna2074|Name=rna2074|organism=Nannochloropsis gaditana|type=mRNA|length=2637bp
CCAAGTGAACCAGGGTTGTCAGAAAGCGAGTCTCCTGTGTGGTGTGTTCA
CAGGTGATGGATGAGAATCTGGTTTATCATGTTGCGTCAATTGAGGAAGG
ATGCAACTAAGCTACTCTTTGCCCTCACTGGTGTCGCTGAGGAAAGGCTG
CGGCCGCCCCCTCCTTGACCTCCTACTACTACCTCCTCGACAATAACTTA
TCCTCAAGACCTTCAGTTTCCCTCTTCACAAACCGAAGCAGAAATCGTTT
ATTCACGACGGGTCCCAGTCTGTGCGAAAATAAGCTCTCAAATTCAAGGC
AGTGACGCTACAATCCTCCCCCTATGGTCGTCTCCCCCCACCCGGGGGGA
GTTTCCTCCGCCAATCAACAATATAAGCTGGCCCTTAACATTTTGAACGA
GCACTTCGGTCCTGTCGTGCAAGACATTGGGTCATACATTCTGCGTCGGG
GGCGCTGCACATTGGCGGAGATATGGCGGGACTCTGACAACAGGAATGGA
AACCTCCACAAGCTTGGCCTCATTAAGGAGGCGCTGGTTATCCTCCTACA
GCACAACCTTCTGGTCGTTGCGATGCCCACTTCTGATGAGATGCTACGAA
AACATACCAAACCTCTGATTTACTATCAAATGGATTTGGATGCAGTCACC
ATGCGCCTCCGCTTTCCCAAATTTTTGCTTCGAGCGCGGCAGCTGTTTGG
AGAGGGTGGTCAGGCAGCGGTGGAGGCTGTCATGCGACACGGGCGTCTCC
CGCTCTCTAAAATTTTGGCGCAGGTGGGAGAGTCGTATAAAGCACGATAT
AACATTGCCACGGTAGCTGATCACACACAGACACTCATGGGTTCCGGAGA
TGGGGAAGCAGGGTCTGGCGCCACCGCATGCGCTGACGCAAGTGTTGATG
TGGAAGACCTGGTCCGGAAGATGATTTTGGAGCATTACCTGGTGCGTGTC
TTGCCCTTGGATCTGGTAACACCATCTCCGGATGCTCTTACAAGCGTTGG
CGCCGCGGCGGCTGCCCGAGGGTCTCGCGCCGCCGCCTCCAAGGCAGCGG
CCAGCGCGGTTCTCTCAAAAGGAGCAGAGACCGAGGCCGGGAAGAAGAGG
GGGCGACAGGGTGGCTTAGGAGGGGGCAAGGAGGGTGATGAGATAGTATC
CCTTGAGATCGGGAGGTCGCTTGGCGCGGAGGAGGGTGTTGCAGCCCCTT
ATGTCAGTAGCGGAGGGGAGGGGCCAGTAGGTGGCCCCCTGAGCATCCTT
GCGAGGAAACGCTTCAAACGTCGCAGTGGGGTAGATGAAGGCCATAAAGC
TGCGGGAATAGATGAGAATGGGAATGGTTTCCACCCGGGGCCGAGCAAGA
AGGTAGTCGGGAGCGGAGAGGCTTGGGAAGGGGTCCGGGGGCCAGGGGGT
GGCGAGGGGGAGGGGACGGAAACGGGGCAGGCGGAGGGGAAGTTCCCGAC
AGGAAGACGAAGAAGCGACCTGGAAGGCATCGTGGAGGAGGACGAGGAGG
CAGACGGGAAGACGTGGGTAGGCGGGGAGGAGTCGCTGGCCGAATGGGTC
GGAGCAGGAGACGAGGTGCTCTGGCGGGTGGGGGTGGAGCAGTTCCATCG
AGACCTCCGGCACGTCACGTGCCTGCGCTTTGTCCGTCAGAAGGTGAACA
CCACGGCCGAGTCCTTGGTGCGCGCCATCCTCCAGCACAGCCTCCCCCTG
GAACGGGACGGCACGGTCGCGCCCCCCCGCTCGCAGCCTTTGAGCCTAGG
GGAGCTGAGTTCCAGAGTCCAGCTGCCTCCCAACGTGACGGTAAAGATGT
ATCTCGAGGTGTTGCAAAACGACCCTGTGCAGATTGTGGACCGGGAGGGG
ACGGCCACGGATGTGTACTGTGTCTGCCTGGGGCGCATCATAGAGAGCCT
GCGGCAACGGACGCTGCATAGTATCATCCGCGAGCGCTACACCACGGACT
CGAAAGCCTGTGACGGAGACCGCAATGCGCGCATCTGCCGGGTGCTCCTC
GACAAGAAGTACCTGGACCCGCAGCAAGTGAGCGAGCTGGCGATGATGTC
CCTGAGGGAGACGCGGGAGAGGCTCTACCGGATGTACGCCGACTTGCTGC
TGACCGTGCAGGAGATTCCCCGACGGGCCGACCACCACCCGAACCAGACC
TTCTACTTGTGGACCTTCAACATGCAGCAGGTGGTGGAGGAGCTGACCCA
GCGCATGTACAAAGGCGCGTTGAACTTGCGCTTGCGTCGACAGAAAGAAA
CAAAGGAGAAGCGAGACCTGTTGGCGAACAAGGAGAACATTCGGGATGAC
GTGGAAGCGGCCCACTTTGATCAGCTGACCACGACCTTGGACCGCCTCGA
CCAAGCCCTGGAGAACCTGGACGCGACCCTCATGCTCTTCACTGTCTTCT
GACGCGACGGGGCGTGGGGATCGGACAACATGGAGGGGTGGAGAGAGACA
TGCAGGAGGAATGGACATATGCAACAATTAAGAATAGAGAAAATCGAGTG
AACATAGTCATGCAGCGCGAAGGCAACGTGCGAGGACAAGAGACTCGGGA
TCCAGGGCCCGAGTTCGTCACGCGTGTATCCAGAGACGCTTCGAAAATGT
GTGCTATGGATTGTGGACATGCTATTTGTCGCTGTTC

protein sequence of rna2074

>rna2074-protein ID=rna2074-protein|Name=rna2074|organism=Nannochloropsis gaditana|type=polypeptide|length=264bp
MTGMRLPMVAVCVMATSTICAAFLLPSPSPRAITSCRMGAMTSNPSPVQP
RPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQ
LQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPP
FFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQF
FKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTA
LQEKRLDRGTVCGK

mRNA from alignment at CM002458.1:827601..828762+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2074 ID=rna2074|Name=rna2074|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp|location=Sequence derived from alignment at CM002458.1:827601..828762+ (Nannochloropsis gaditana)
TCAATTGACGCAACATGATAAACCAGATTCTCATCCATCACCTGTGAACA
CACCACACAGGAGACTCGCTTTCTGACAACCCTGGTTCACTTGGGTCCGA
AAAGCTGCCCGTCTCGTGTGACGTACGCCTCGTATCGGATTGGAAGGGGA
ATCCGTGTCTTTTGGACTTTTCAAAGCCTCTCGTCTTTGGAGGGATTGGA
GGTGCTTACGCCGCACTTGTAGAGTATGACGGGTATGAGGTTACCGATGG
TAGCTGTGTGCGTCATGGCCACATCCACAATTTgcgctgctttccttctt
cccagcccttccccccgcgccATCACCTCTTGTCGAATGGGAGCTATGAC
TTCTAACCCTTCTCCTGTGCAACCCAGACCGCCGCTCCCTGATAATTTTT
ACGCTGAGTCTTTGCTTGATAAAGTTGCTCTTGCGCTTTTTCGACGCCTT
GTCCAACGTGAAATTGGTTACGTGTCGAGCAAACCGGGCTACGATGGCCT
CATTGAGGAGGCCCGTCATTACCAGCTTCAGCCCGGAGTGACTGCCGAGG
ACCAACAAAAAATGGTCAAGACCTGTCTAGCCACCATTGCTGGTCCATTA
GTACCTCCTGTGTACAGAACATTCATGGCGCCGTGGTTCTGGGCTCCCTT
TTTGACGGCTATCTTCACGCCGCCATTTTTCAAGTTCCTAGTGGGTCCTA
ACAGGTACGATGTCCGGGATGACGGGCAAGCGGGCGGAGTGTACGCGGAA
CGATGTCGCTTCTTGGAGGAGACAAACTGCAAGGGTCTTTGTCTGCACAT
GTGCAAATTACCGACGCAGCAGTTTTTCAAGGAGACCCTCGGGCTGGACA
TGACAATGACGCCCGATTACGACACGTACGAGTGTCGCCTTTCTTTTGGC
TTGGCTCCCAAAGCAGTGGAGGACGATCCAAGCATTCCCAAAGGATGTTT
GACTGGGTGCAGTGCGGTAACGGCCTTGCAAGAGAAGAGATTGGACAGGG
GTACTGTATGTGGCAAGTAGGCTCTCCATTACAGATGTTTGCTTGGGTTG
ACAAGTGTGCGGGGCCCTCATGTCAATCATGCGCAGTAGCAATGAATAAA
AGGATAAGAAATATGGCATAGTGTaaacaaggaaaaaaatacaGCTGACG
TGCCCTCTTGAT

Coding sequence (CDS) from alignment at CM002458.1:827601..828762+

>rna2074 ID=rna2074|Name=rna2074|organism=Nannochloropsis gaditana|type=CDS|length=795bp|location=Sequence derived from alignment at CM002458.1:827601..828762+ (Nannochloropsis gaditana)
ATGACGGGTATGAGGTTACCGATGGTAGCTGTGTGCGTCATGGCCACATC
CACAATTTgcgctgctttccttcttcccagcccttccccccgcgccATCA
CCTCTTGTCGAATGGGAGCTATGACTTCTAACCCTTCTCCTGTGCAACCC
AGACCGCCGCTCCCTGATAATTTTTACGCTGAGTCTTTGCTTGATAAAGT
TGCTCTTGCGCTTTTTCGACGCCTTGTCCAACGTGAAATTGGTTACGTGT
CGAGCAAACCGGGCTACGATGGCCTCATTGAGGAGGCCCGTCATTACCAG
CTTCAGCCCGGAGTGACTGCCGAGGACCAACAAAAAATGGTCAAGACCTG
TCTAGCCACCATTGCTGGTCCATTAGTACCTCCTGTGTACAGAACATTCA
TGGCGCCGTGGTTCTGGGCTCCCTTTTTGACGGCTATCTTCACGCCGCCA
TTTTTCAAGTTCCTAGTGGGTCCTAACAGGTACGATGTCCGGGATGACGG
GCAAGCGGGCGGAGTGTACGCGGAACGATGTCGCTTCTTGGAGGAGACAA
ACTGCAAGGGTCTTTGTCTGCACATGTGCAAATTACCGACGCAGCAGTTT
TTCAAGGAGACCCTCGGGCTGGACATGACAATGACGCCCGATTACGACAC
GTACGAGTGTCGCCTTTCTTTTGGCTTGGCTCCCAAAGCAGTGGAGGACG
ATCCAAGCATTCCCAAAGGATGTTTGACTGGGTGCAGTGCGGTAACGGCC
TTGCAAGAGAAGAGATTGGACAGGGGTACTGTATGTGGCAAGTAG

Synonyms

Publications