EWM28615.1, cds2066 (CDS) Nannochloropsis gaditana

Overview
NameEWM28615.1
Unique Namecds2066
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:827826..828620 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28615.1
Productprotein of unknown function DUF4033
Orig transcript idgnl|cribi|Naga_100009g88.658.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:827826..828620 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025114DUF4033
Homology
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|585111033|gb|EWM28615.1| (protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MTGMRLPMVAVCVMATSTICAAFLLPSPSPRAITSCRMGAMTSNPSPVQPRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKRLDRGTVCGK 264
            MTGMRLPMVAVCVMATSTICAAFLLPSPSPRAITSCRMGAMTSNPSPVQPRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKRLDRGTVCGK
Sbjct:    1 MTGMRLPMVAVCVMATSTICAAFLLPSPSPRAITSCRMGAMTSNPSPVQPRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKRLDRGTVCGK 264          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|298713846|emb|CBJ33737.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 299.671 bits (766), Expect = 9.628e-99
Identity = 138/198 (69.70%), Postives = 162/198 (81.82%), Query Frame = 0
Query:   49 QPRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCS 246
            Q RPPL  +FY+ESLLDKVALALFR LVQ+EIGY S +PGY GLI+EA++Y +  G + EDQQ MV   L TIAGP VPPVY+ FMAPW WAPFLTA FTPPFFKFLVGPN+ D R D   GGV+ ERCRFLEETNCKGLC +MCK+PT++FF+ETLGL M M PD+DTYECRLSFGL   A+E+D ++P+GCL+GCS
Sbjct:   87 QLRPPLAADFYSESLLDKVALALFRVLVQKEIGYKSEEPGYAGLIDEAQNYMVIQGASVEDQQDMVVRVLTTIAGPAVPPVYKLFMAPWPWAPFLTAFFTPPFFKFLVGPNKLDARKDDTPGGVFVERCRFLEETNCKGLCTNMCKIPTERFFEETLGLTMAMEPDFDTYECRLSFGLESPAMEEDDTVPRGCLSGCS 284          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|298714305|emb|CBJ33899.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 291.967 bits (746), Expect = 9.488e-97
Identity = 136/198 (68.69%), Postives = 160/198 (80.81%), Query Frame = 0
Query:   49 QPRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCS 246
            Q RPPL  +F +ESLLDKVALALFR LVQ+EIGY S +PGY GLI+EA++Y +  G + EDQQ M    L TIAGP VPPVY+ FMAPW WAPFLTA FTPPFFKFLVGPN+ D R D   GGV+ ERCRFLEETNCKGLC +MCK+PT++FF+ETLGL M M PD+DTYECRLSFGL   A+E+D ++P+GCL+GCS
Sbjct:    8 QLRPPLAADFCSESLLDKVALALFRVLVQKEIGYKSEEPGYAGLIDEAQNYMVIQGASVEDQQDMAVRVLTTIAGPAVPPVYKLFMAPWPWAPFLTAFFTPPFFKFLVGPNKLDARKDDTPGGVFVERCRFLEETNCKGLCTNMCKIPTERFFEETLGLTMAMEPDFDTYECRLSFGLESPAMEEDDTVPRGCLSGCS 205          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|873238298|emb|CEL96006.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 224.172 bits (570), Expect = 6.048e-69
Identity = 104/209 (49.76%), Postives = 141/209 (67.46%), Query Frame = 0
Query:   56 DNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKRLDRGTVCGK 264
            D FYA +  +++AL LFR  VQR+IGY S   GYDGLI+EA+H+ L    T   Q+ MV   L +++GPL+P  +RTF+APW + P +T+I TP    FLVGP   + R+DG+ GGV  +RCRFL  T CKGLCL+MCK P Q +F++ LGLDMTM P++ T EC+LSFGLAP  +E+D S+P  CL  C   + L ++  DR  +C +
Sbjct:   96 DAFYAMNAWERMALGLFREQVQRQIGYASPMEGYDGLIDEAKHFMLVQNATTSLQEAMVLNVLRSLSGPLLPIFFRTFVAPWPYGPLMTSIVTPLLLSFLVGPVEVNRREDGRLGGVLVKRCRFLAATKCKGLCLNMCKSPAQTYFRDVLGLDMTMRPNFATCECQLSFGLAPPPIEEDVSVPSDCLGQCGWKSQLMQRPGDREMICSR 304          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|551651416|ref|XP_005828489.1| (hypothetical protein GUITHDRAFT_164374 [Guillardia theta CCMP2712] >gi|428172601|gb|EKX41509.1| hypothetical protein GUITHDRAFT_164374 [Guillardia theta CCMP2712])

HSP 1 Score: 219.164 bits (557), Expect = 9.125e-66
Identity = 108/221 (48.87%), Postives = 143/221 (64.71%), Query Frame = 0
Query:   50 PRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMA---------PWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKRLDRGTV 261
            P   LP+  Y ES LDKV L++FR LV +E G+ S K G  GL+E+ R Y L+PG TAE Q +MV   LA +  P++PP Y+ FM+         PW WA +LT+  TP FF FLVGP+R + R DGQ GG+  E+C+FL+E+ CK LC++ CKLP QQFF + LGL +T+TP+++T EC+ SFG  P  V+ DP IP+GCL+ C    AL   R  R  V
Sbjct:  178 PSCSLPNVTYTESPLDKVLLSIFRSLVAKETGFQSEKEGILGLLEQGREYLLRPGQTAEAQNRMVYNTLAGLLTPVMPPFYKVFMSGIIAGKQYGPWPWAAWLTSFVTPTFFGFLVGPSRPNRRKDGQLGGLVVEKCKFLQESGCKSLCINQCKLPAQQFFSQELGLPLTVTPNFETQECQWSFGEHPIDVDKDPRIPRGCLSECPTREALVSMRESRSCV 398          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|1210529473|dbj|GAX11909.1| (hypothetical protein FisN_17Lh183 [Fistulifera solaris])

HSP 1 Score: 218.394 bits (555), Expect = 7.108e-65
Identity = 104/215 (48.37%), Postives = 141/215 (65.58%), Query Frame = 0
Query:   54 LPDNFYAESLLDKVALALFRRLVQREIGYVSS-KPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMA----------------PWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTAL 251
            L D  Y ES LD+  L LFR  V++  G VSS K G  GL+E+ + + LQ G TAE Q KMVK+ L  +  P++PP YR FM+                PWF+AP+LT+  TP FF FLVGP+R ++R DGQ GG+  E+C+FL+E+ CKGLCLH CK+P Q+FF++ LGL +T++P++ T EC+ SFG  P  V++DP+ P GCL GC +  AL
Sbjct:  232 LEDMVYTESALDQFLLWLFRNFVEKNTGGVSSTKAGIQGLLEQGQKFMLQEGQTAESQHKMVKSTLGDLMTPVLPPFYRIFMSGIVPKLGNDMDGKQLGPWFYAPWLTSFVTPTFFGFLVGPSRPNLRKDGQLGGLIVEKCKFLQESGCKGLCLHQCKIPAQEFFQQELGLPLTVSPNFVTQECQWSFGETPLPVQEDPTFPAGCLAGCKSRDAL 446          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|219118645|ref|XP_002180091.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408348|gb|EEC48282.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 208.764 bits (530), Expect = 2.679e-61
Identity = 102/215 (47.44%), Postives = 139/215 (64.65%), Query Frame = 0
Query:   54 LPDNFYAESLLDKVALALFRRLVQREIGYVSS-KPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMA----------------PWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTAL 251
            + D  Y ES LDK+ L++FR LV +  G V+S K G  GL+++ R + L+PG T E Q KMV   LA +  P++PP Y  FM+                PWF+AP+LT++ TP FF FLVGP+R + R DGQ GG+  E+C+FL+++ CKGLCLH CKLP QQFFK+ LGL +T++P++ T EC+ SFG +P    +DPS P GCL GC +   L
Sbjct:  226 IEDMKYNESPLDKLLLSIFRNLVTKNTGGVTSPKEGILGLVDQGRTFMLKPGQTPEAQHKMVSDTLAGLMTPVLPPFYGIFMSGIVPKIGTEFDGKQFGPWFYAPWLTSVVTPTFFGFLVGPSRPNHRKDGQLGGLVVEKCKFLQKSGCKGLCLHQCKLPAQQFFKDELGLPLTVSPNFVTQECQWSFGESPLPASEDPSFPTGCLVGCESRKTL 440          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|224013208|ref|XP_002295256.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969218|gb|EED87560.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 204.527 bits (519), Expect = 1.570e-59
Identity = 104/222 (46.85%), Postives = 139/222 (62.61%), Query Frame = 0
Query:   50 PRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSK-PGYDGLIEEARHY---QLQPGVTAED----QQKMVKTCLATIAGPLVPPVYRTFMA----------------PWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSA 247
            P   L D  Y +S LDKV L++FR+LV    G + +  PG  GL+ + R +   +L  GV+ ED    Q  MVK  L  +  P++PP YR FM+                PWF+APFLT++ TP FF FLVGP+R + R DGQ GG+  E+C+FL+E+ CKGLCLH CK+P Q+FFKE LGLD+T+ P++ T EC+ SFG  P   E+DPS P+GCL GC +
Sbjct:  220 PDCELDDMTYNDSSLDKVLLSIFRKLVAENTGGIQNDTPGIKGLLIQGRQFMTKELPEGVSYEDHTIAQHTMVKNTLGGLMTPVLPPFYRIFMSGIVPKLGTEFDGKQLGPWFYAPFLTSMVTPIFFGFLVGPSRPNRRADGQRGGLVVEKCKFLQESGCKGLCLHQCKIPAQEFFKEELGLDLTVKPNFVTQECQWSFGETPLPPEEDPSFPRGCLVGCES 441          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|397616815|gb|EJK64149.1| (hypothetical protein THAOC_15145, partial [Thalassiosira oceanica])

HSP 1 Score: 204.142 bits (518), Expect = 5.118e-59
Identity = 103/226 (45.58%), Postives = 142/226 (62.83%), Query Frame = 0
Query:   54 LPDNFYAESLLDKVALALFRRLVQREIGYVSSK-PGYDGLIEEARHY---QLQPGVT----AEDQQKMVKTCLATIAGPLVPPVYRTFMA----------------PWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKR 255
            L D  ++ES LDK+ L++FR  V    G V+S  PG  GL+ + R Y   +L  GVT    +++Q  MVK  LA +  P++PP YR FM+                PWF+AP+LT I TP FF FLVGP+R + R DGQ GG+  E+C+FL+E+ CKGLCLH CK+P Q FF+E LGLD+T+ P++ T EC+ SFG  P   ++DPS P GCL GC +  A+ +++
Sbjct:  267 LEDMKFSESPLDKILLSIFRSQVTENTGGVTSDIPGIKGLLAQGREYMTKELPEGVTYAEHSKEQNTMVKKTLAALMTPVLPPFYRIFMSGIVPKLGTEWDGKQIGPWFYAPWLTTIVTPIFFGFLVGPSRPNRRSDGQRGGLVVEKCKFLQESGCKGLCLHQCKIPAQDFFREELGLDLTVKPNFVTQECQWSFGEKPLTPDEDPSFPNGCLVGCESRKAMADRK 492          
BLAST of EWM28615.1 vs. NCBI_GenBank
Match: gi|1210528131|dbj|GAX13246.1| (hypothetical protein FisN_17Hh183 [Fistulifera solaris])

HSP 1 Score: 174.096 bits (440), Expect = 3.445e-48
Identity = 79/162 (48.77%), Postives = 108/162 (66.67%), Query Frame = 0
Query:  106 TAEDQQKMVKTCLATIAGPLVPPVYRTFMA----------------PWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTAL 251
            TAE Q  MVK+ L  +  P++PP YR FM+                PWF+AP+LT+  TP FF FLVGP+R ++R DGQ GG+  E+C+FL+E+ CKGLCLH CK+P Q+FF++ LGL +T++P++ T EC+ SFG  P  V +DP+ P GCL GC +  AL
Sbjct:  246 TAEAQHTMVKSTLGNLMTPVLPPFYRIFMSGFVPKLGTDMDGKQLGPWFYAPWLTSFVTPTFFGFLVGPSRPNLRKDGQLGGLIVEKCKFLQESGCKGLCLHQCKIPAQEFFQQELGLPLTVSPNFVTQECQWSFGETPLPVNEDPTFPAGCLAGCKSRDAL 407          
The following BLAST results are available for this feature:
BLAST of EWM28615.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111033|gb|EWM28615.1|0.000e+0100.00protein of unknown function DUF4033 [Nannochlorops... [more]
gi|298713846|emb|CBJ33737.1|9.628e-9969.70conserved unknown protein [Ectocarpus siliculosus][more]
gi|298714305|emb|CBJ33899.1|9.488e-9768.69conserved unknown protein [Ectocarpus siliculosus][more]
gi|873238298|emb|CEL96006.1|6.048e-6949.76unnamed protein product [Vitrella brassicaformis C... [more]
gi|551651416|ref|XP_005828489.1|9.125e-6648.87hypothetical protein GUITHDRAFT_164374 [Guillardia... [more]
gi|1210529473|dbj|GAX11909.1|7.108e-6548.37hypothetical protein FisN_17Lh183 [Fistulifera sol... [more]
gi|219118645|ref|XP_002180091.1|2.679e-6147.44predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224013208|ref|XP_002295256.1|1.570e-5946.85predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397616815|gb|EJK64149.1|5.118e-5945.58hypothetical protein THAOC_15145, partial [Thalass... [more]
gi|1210528131|dbj|GAX13246.1|3.445e-4848.77hypothetical protein FisN_17Hh183 [Fistulifera sol... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2074rna2074Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications