rna2072, rna2072 (mRNA) Nannochloropsis gaditana

Overview
Namerna2072
Unique Namerna2072
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1290
Alignment locationCM002458.1:824257..825080 +

Link to JBrowse

Properties
Property NameValue
ProductRibosomal protein L49/IMG2
Orig transcript idgnl|cribi|Naga_100009g90.599.mrna
Orig protein idgnl|cribi|Naga_100009g90.599
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:824257..825080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g90gene1982Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2072rna2072-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28556.1cds2064Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2072 ID=rna2072|Name=rna2072|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
ATGTCGTCCATGTCACTGGCGCAAGATCAGCGGAATGAGCTCCTCTTTGT
AGGGTTCAACCAAGATTACGGCTGCTTCGCATGCGGCACGGACAATGGAT
TCAGGATCTACAATGTGGACCCCTTCAGGGAGACTTTCCGACGCATTTTT
CCCAACGGTGGAATTGGAATCGTAGAGATGCTCTTCAGAACCAATTTGGT
GGCGCTAGTGGGCGGCGGACGCAACCCTCGTTTTCCCCCGAACAAGGTGA
TGATATGGGACGACCATCAGAACCGGTGCGTGGGCGAGCTGAGTTTCCGG
AGCGAGGTCAAGGCCGTGAAGCTCCGAAGGGACAGGGTCGTGGTCGTGCT
GACCACGAAAATTTACGTCTATCGATTCGTGGATCTGCACCTGCAAGACC
AGATGAGCACGCTCCCAAACCCGCGGGGTCTCGTCGCCCTGAGCCCCGAT
AACAACAACACGGTGTTGGCCTGCCCCGGCATCAACAAAGGCTCTGTCCG
CGTCGAGCTGTACGACAGCAGGAAGTCCACGCTCATCCCAGCGCACGAAT
CGGAGCTGGCGCAGATGGCCCTCAACCTGGACGGGACGCGCCTCGCCACC
GCCTCGGACAAGGGGACTTTGGTCCGAGTCTTCGACACCTACTCAGGTGA
GCTCCTCCAGGAGTTGCGGCGAGGAATGGACAGGGCAGAGATTTACTCGT
TGGCCTTCAATGCGTCCTCCACATTCGTGGCTTGCTCTTCCTGCAAGGGC
ACCGTGCATATTTTTGCCGTCGGCGCCGAGGGCGGGAACGGCTCCGGAGA
GGGAGGGGGTGGGGGAGGGGGAAAACAAGGGACTCGTTCAGACAGTGGGG
CGTGGTCGTCGTCAGCAGCGATGGGAGGCACGGGAGGGGCGGGGGCTGGA
GGGGAAGAGGTGAAGAATGCGACCTCAGGCTTATCGTTCATGCGGAGCCT
GCTCCCGCAGGTCACCCCCAGATACTTCGCTTCGGAGTGGAGTTTTGCGC
AGGTTCGAGGCCTGGAAGCACGTACTGTTGTGGCCTTTGGTGTACGAGAT
CATACATTGATTTGCGTGGGCGCGGACGGCACCTACTTGGTCTCAAACTT
TGCATCAGGAGGGGAGGCGGAGCGCGTGTCTTACAAAAAGCTTGTCAGCC
ATCAATCCCTCCACCTGCACAATCCCAAGCGACCCTCCCTTCCAGAGATC
GCAATGGGAGACGTGGTGGGGATGCCGACTCCCTTCAAGCTGTGTGATAG
GACTTTGACCAGCCTTGTCTTAATTGGTATGCAAAATTGA
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protein sequence of rna2072

>rna2072-protein ID=rna2072-protein|Name=rna2072|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPA
PLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVY
TDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGR
YTAQLRQWLAGLGF
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mRNA from alignment at CM002458.1:824257..825080+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2072 ID=rna2072|Name=rna2072|organism=Nannochloropsis gaditana|type=mRNA|length=824bp|location=Sequence derived from alignment at CM002458.1:824257..825080+ (Nannochloropsis gaditana)
CGGGTGGGTCCGTATGATGCTTTACAAACCGTCGAGTGCTACATCCGAGA
CGCCCTGGACCGTACGACTAAGATCCTCGCATTGCTTTTTGATTGGGGTA
CACGCTCGCACGTGACAGTCGCCATGAAAATTAGGCTGGCGTCTATGTGC
GTTGGCATGTCGAAAATTGTTTTAAGCCGCATGAAATGACGAATTGTTTC
GAATAAATTCGGAGCCCTTCATTGACACCCTTTCATACACATCCTGTCCA
TTTCCTCATCACTGTCATCCTCAACACAAGTGGGGTGACAAGTCATGGAG
CGagcctctcctctcctcgcacGTTTTGGTGGGCATCTTCGCAAGCACTC
TAACAGGGCCAAGAAACGCATCTTCGGCAGTCGCACACGATATGAGGATG
TGATAAGACCTGCCAGGGAGCAGGCTGCGGCTGAACCGCCTGCGCCCTTG
AAATACCCACCAACATATCAGCCCTCACGTGTTCTCCCCAACGGATGGTC
CGCTCCACCCGATCCTGCCACCGTTGGCTTGCCAAAAACGTCACTTCCCT
TCCAAGTTGAGCGGACCGACAAAGGGCGGTGGCTGCCAGTGTACACGGAC
GTACGCAAAGGTCGCACGCAATTGATCACGCTGGTGCGGAAGGTGTCAGG
AgatttggaggagatgcgaGGGGAGATGTCCAAAGTTTGTGCAAATCAAG
AAGTGAGAATACGCACGGGCCCCCGTCTGGAAGTAAAGGGGCGCTACACC
GCGCAGTTGCGGCAGTGGTTGGCAGGACTGGGGTTCTAAAGAAAAAACTA
AGAACAGCGACAAATAGCATGTCC
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Coding sequence (CDS) from alignment at CM002458.1:824257..825080+

>rna2072 ID=rna2072|Name=rna2072|organism=Nannochloropsis gaditana|type=CDS|length=495bp|location=Sequence derived from alignment at CM002458.1:824257..825080+ (Nannochloropsis gaditana)
ATGGAGCGagcctctcctctcctcgcacGTTTTGGTGGGCATCTTCGCAA
GCACTCTAACAGGGCCAAGAAACGCATCTTCGGCAGTCGCACACGATATG
AGGATGTGATAAGACCTGCCAGGGAGCAGGCTGCGGCTGAACCGCCTGCG
CCCTTGAAATACCCACCAACATATCAGCCCTCACGTGTTCTCCCCAACGG
ATGGTCCGCTCCACCCGATCCTGCCACCGTTGGCTTGCCAAAAACGTCAC
TTCCCTTCCAAGTTGAGCGGACCGACAAAGGGCGGTGGCTGCCAGTGTAC
ACGGACGTACGCAAAGGTCGCACGCAATTGATCACGCTGGTGCGGAAGGT
GTCAGGAgatttggaggagatgcgaGGGGAGATGTCCAAAGTTTGTGCAA
ATCAAGAAGTGAGAATACGCACGGGCCCCCGTCTGGAAGTAAAGGGGCGC
TACACCGCGCAGTTGCGGCAGTGGTTGGCAGGACTGGGGTTCTAA
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Synonyms
Publications